Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0013560

Physical Location & Seq

Genomic Coordinates Forward (+)

9996282 .. 9997052

Gene Structure 771 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0117200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

ATGACTTCTTCATCTTCATCTTCTCCGGTCTACACCTGCACGGAGTGCGGAGCAAACCTGAACCTGAACGCAGCCTATCTCTACCCGCCGGACGTTTACTTCGAGGCCGGCAACAAGAAAACGCTGTCGTTTTCGGGGATCGACACGACCAAGTTCAGGTTCGAGAAGGAGGACAAGATCATGCCCTTCTGGGAGACCCGAAACTATTGGGGGATCCAACGGACGAGGACCAAGATCAAGTGCAACGGATGTGGGCGGCTGGTCGGACACGTGTACGACGATGGGCCGCCGATAATGGTGGGGAATGGGCAGTATGGGTTCGGGCCCAGCCAGGTTATTCCCAGAGAGGCTAGGTACAGGTTCAAGATCAAGGCCTTACGGGTTTCGTCTCAGACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005048 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005643 GO:0006606 GO:0006810 GO:0006886 GO:0006913 GO:0008104 GO:0008139 GO:0008150 GO:0012505 GO:0015031 GO:0015833 GO:0017038 GO:0031967 GO:0031975 GO:0032991 GO:0033036 GO:0033218 GO:0033365 GO:0034504 GO:0034613 GO:0042277 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0051169 GO:0051170 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071705 GO:0072594

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

Nucleoporin_FG2

Protein Analysis

132

Amino Acids

14.91

Weight (kDa)

9.36

Isoelectric Point (pI)

29.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
At4g08330	PF24046	4 - 129	2.7e-39	At4g08330 beta-tent

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013560)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G37130
fragaria_vesca	FvH4_1g14810
malus_domestica	MD02G1161300.v1.1 MD15G1275400.v1.1
prunus_persica	Prupe.7G142300_v2.0.a1
pyrus_communis	pycom02g12740 pycom15g23840
rosa_chinensis	RchiOBHm_Chr2g0103771
rosa_laevigata	RLG00000017258
rosa_multiflora	Rmu_co8256557.1_g000001
rosa_roxburghii	Rroxscaffold_2G00139410
rosa_rugosa	Rorug02G0117200
rosa_samantha	Rh2AG166200 Rh2BG173400 Rh2CG172100 Rh2DG171600
rosa_wichuraiana	Rw0G006920 Rw2G013020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	44
Acc36I	ACCTGC	1 cut(s)	44
AccI	GTMKAC	1 cut(s)	30
AciI	CCGC	4 cut(s)	48, 86, 256, 287
AclWI	GGATC	3 cut(s)	146, 208, 221
AcvI	CACGTG	1 cut(s)	271
AdeI	CACNNNGTG	1 cut(s)	45
AfaI	GTAC	2 cut(s)	275, 356
AfiI	CCNNNNNNNGG	1 cut(s)	156
AflIII	ACRYGT	2 cut(s)	268, 270
AgsI	TTSAA	1 cut(s)	364
AjnI	CCWGG	1 cut(s)	330
AjuI	GAANNNNNNNTTGG	2 cut(s)	143, 175
Alw26I	GTCTC	2 cut(s)	188, 393
AlwI	GGATC	3 cut(s)	146, 208, 221
AoxI	GGCC	4 cut(s)	105, 284, 323, 372
ApaI	GGGCCC	1 cut(s)	327
ApeKI	GCWGC	1 cut(s)	71
ArsI	GACNNNNNNTTYG	2 cut(s)	83, 115
AspS9I	GGNCC	4 cut(s)	228, 284, 323, 324
AvaII	GGWCC	1 cut(s)	228
BaeGI	GKGCMC	1 cut(s)	327
BamHI	GGATCC	1 cut(s)	213
BanII	GRGCYC	1 cut(s)	327
BbrPI	CACGTG	1 cut(s)	271
BbvI	GCAGC	1 cut(s)	83
BccI	CCATC	1 cut(s)	275
BciT130I	CCWGG	1 cut(s)	332
BcoDI	GTCTC	2 cut(s)	188, 393
BfaI	CTAG	1 cut(s)	351
BfuAI	ACCTGC	1 cut(s)	44
BisI	GCNGC	3 cut(s)	72, 257, 287
BlsI	GCNGC	3 cut(s)	73, 258, 288
Bme1390I	CCNGG	1 cut(s)	332
Bme18I	GGWCC	1 cut(s)	228
BmgT120I	GGNCC	4 cut(s)	228, 284, 323, 324
BmiI	GGNNCC	2 cut(s)	215, 325
BmrFI	CCNGG	1 cut(s)	332
BsaAI	YACGTR	1 cut(s)	271
BsaI	GGTCTC	1 cut(s)	188
BsaWI	WCCGGW	1 cut(s)	25
Bsc4I	CCNNNNNNNGG	1 cut(s)	156
Bse118I	RCCGGY	1 cut(s)	107
BseBI	CCWGG	1 cut(s)	332
BseGI	GGATG	1 cut(s)	254
BseLI	CCNNNNNNNGG	1 cut(s)	156
BseSI	GKGCMC	1 cut(s)	327
BseXI	GCAGC	1 cut(s)	83
BseYI	CCCAGC	1 cut(s)	326
BsgI	GTGCAG	1 cut(s)	22
BshFI	GGCC	4 cut(s)	107, 286, 325, 374
BsiSI	CCGG	3 cut(s)	26, 89, 108
BslI	CCNNNNNNNGG	1 cut(s)	156
BsmAI	GTCTC	2 cut(s)	188, 393
BsmBI	CGTCTC	1 cut(s)	393
BsnI	GGCC	4 cut(s)	107, 286, 325, 374
Bso31I	GGTCTC	1 cut(s)	188
Bsp120I	GGGCCC	1 cut(s)	323
Bsp1286I	GDGCHC	1 cut(s)	327
Bsp143I	GATC	5 cut(s)	138, 177, 213, 234, 366
BspACI	CCGC	4 cut(s)	48, 86, 256, 287
BspANI	GGCC	4 cut(s)	107, 286, 325, 374
BspLI	GGNNCC	2 cut(s)	215, 325
BspMI	ACCTGC	1 cut(s)	44
BspPI	GGATC	3 cut(s)	146, 208, 221
BspTNI	GGTCTC	1 cut(s)	188
BsrFI	RCCGGY	1 cut(s)	107
BssAI	RCCGGY	1 cut(s)	107
BssMI	GATC	5 cut(s)	138, 177, 213, 234, 366
Bst2UI	CCWGG	1 cut(s)	332
BstAPI	GCANNNNNTGC	1 cut(s)	45
BstBAI	YACGTR	1 cut(s)	271
BstC8I	GCNNGC	1 cut(s)	109
BstDEI	CTNAG	1 cut(s)	390
BstF5I	GGATG	1 cut(s)	254
BstKTI	GATC	5 cut(s)	141, 180, 216, 237, 369
BstMAI	GTCTC	2 cut(s)	188, 393
BstMBI	GATC	5 cut(s)	138, 177, 213, 234, 366
BstMWI	GCNNNNNNNGC	1 cut(s)	45
BstNI	CCWGG	1 cut(s)	332
BstSCI	CCNGG	1 cut(s)	330
BstSLI	GKGCMC	1 cut(s)	327
BstV1I	GCAGC	1 cut(s)	83
BstX2I	RGATCY	1 cut(s)	213
BstYI	RGATCY	1 cut(s)	213
BsuRI	GGCC	4 cut(s)	107, 286, 325, 374
BtsCI	GGATG	1 cut(s)	254
BveI	ACCTGC	1 cut(s)	44
Cac8I	GCNNGC	1 cut(s)	109
Cfr10I	RCCGGY	1 cut(s)	107
Cfr13I	GGNCC	4 cut(s)	228, 284, 323, 324
Csp6I	GTAC	2 cut(s)	274, 355
CspCI	CAANNNNNGTGG	2 cut(s)	232, 267
CviAII	CATG	1 cut(s)	181
CviJI	RGCY	8 cut(s)	74, 107, 259, 286, 325, 330, 350, 374
CviKI_1	RGCY	8 cut(s)	74, 107, 259, 286, 325, 330, 350, 374
CviQI	GTAC	2 cut(s)	274, 355
DdeI	CTNAG	1 cut(s)	390
DpnI	GATC	5 cut(s)	140, 179, 215, 236, 368
DpnII	GATC	5 cut(s)	138, 177, 213, 234, 366
DraIII	CACNNNGTG	1 cut(s)	45
Eco147I	AGGCCT	1 cut(s)	374
Eco24I	GRGCYC	1 cut(s)	327
Eco31I	GGTCTC	1 cut(s)	188
Eco47I	GGWCC	1 cut(s)	228
Eco72I	CACGTG	1 cut(s)	271
EcoRII	CCWGG	1 cut(s)	330
EcoT38I	GRGCYC	1 cut(s)	327
Esp3I	CGTCTC	1 cut(s)	393
FaeI	CATG	1 cut(s)	184
FaiI	YATR	2 cut(s)	182, 315
FatI	CATG	1 cut(s)	180
FauI	CCCGC	1 cut(s)	93
FblI	GTMKAC	1 cut(s)	30
Fnu4HI	GCNGC	3 cut(s)	72, 257, 287
FokI	GGATG	1 cut(s)	261
FriOI	GRGCYC	1 cut(s)	327
Fsp4HI	GCNGC	3 cut(s)	72, 257, 287
FspBI	CTAG	1 cut(s)	351
GluI	GCNGC	3 cut(s)	72, 257, 287
GsaI	CCCAGC	1 cut(s)	330
HaeIII	GGCC	4 cut(s)	107, 286, 325, 374
HapII	CCGG	3 cut(s)	26, 89, 108
Hin1II	CATG	1 cut(s)	184
HpaII	CCGG	3 cut(s)	26, 89, 108
Hpy166II	GTNNAC	3 cut(s)	31, 97, 274
Hpy188I	TCNGA	2 cut(s)	266, 393
Hpy188III	TCNNGA	2 cut(s)	163, 364
Hpy8I	GTNNAC	3 cut(s)	31, 97, 274
Hpy99I	CGWCG	1 cut(s)	281
HpyAV	CCTTC	2 cut(s)	160, 196
HpyCH4IV	ACGT	2 cut(s)	93, 270
HpyCH4V	TGCA	2 cut(s)	39, 243
HpyF10VI	GCNNNNNNNGC	1 cut(s)	45
HpyF3I	CTNAG	1 cut(s)	390
HpySE526I	ACGT	2 cut(s)	93, 270
Hsp92II	CATG	1 cut(s)	184
KroI	GCCGGC	1 cut(s)	107
KroNI	GCCGGC	1 cut(s)	109
Kzo9I	GATC	5 cut(s)	138, 177, 213, 234, 366
LmnI	GCTCC	1 cut(s)	50
Lsp1109I	GCAGC	1 cut(s)	83
MaeI	CTAG	1 cut(s)	351
MaeII	ACGT	2 cut(s)	93, 270
MalI	GATC	5 cut(s)	140, 179, 215, 236, 368
MboI	GATC	5 cut(s)	138, 177, 213, 234, 366
MboII	GAAGA	2 cut(s)	6, 12
MflI	RGATCY	1 cut(s)	213
MhlI	GDGCHC	1 cut(s)	327
MmeI	TCCRAC	2 cut(s)	241, 244
MnlI	CCTC	4 cut(s)	97, 163, 219, 340
MroNI	GCCGGC	1 cut(s)	107
MseI	TTAA	1 cut(s)	397
MspI	CCGG	3 cut(s)	26, 89, 108
MspR9I	CCNGG	1 cut(s)	332
MvaI	CCWGG	1 cut(s)	332
MwoI	GCNNNNNNNGC	1 cut(s)	45
NaeI	GCCGGC	1 cut(s)	109
NdeII	GATC	5 cut(s)	138, 177, 213, 234, 366
NgoMIV	GCCGGC	1 cut(s)	107
NlaIII	CATG	1 cut(s)	184
NlaIV	GGNNCC	2 cut(s)	215, 325
PaqCI	CACCTGC	1 cut(s)	44
PceI	AGGCCT	1 cut(s)	374
PcsI	WCGNNNNNNNCGW	2 cut(s)	99, 276
PdiI	GCCGGC	1 cut(s)	109
PkrI	GCNGC	3 cut(s)	73, 258, 288
PmaCI	CACGTG	1 cut(s)	271
PmlI	CACGTG	1 cut(s)	271
Ppu21I	YACGTR	1 cut(s)	271
Psp6I	CCWGG	1 cut(s)	330
PspCI	CACGTG	1 cut(s)	271
PspFI	CCCAGC	1 cut(s)	326
PspGI	CCWGG	1 cut(s)	330
PspN4I	GGNNCC	2 cut(s)	215, 325
PspOMI	GGGCCC	1 cut(s)	323
PspPI	GGNCC	4 cut(s)	228, 284, 323, 324
PsuI	RGATCY	1 cut(s)	213
RsaI	GTAC	2 cut(s)	275, 356
RsaNI	GTAC	2 cut(s)	274, 355
SaqAI	TTAA	1 cut(s)	397
SatI	GCNGC	3 cut(s)	72, 257, 287
Sau3AI	GATC	5 cut(s)	138, 177, 213, 234, 366
Sau96I	GGNCC	4 cut(s)	228, 284, 323, 324
ScrFI	CCNGG	1 cut(s)	332
SduI	GDGCHC	1 cut(s)	327
SetI	ASST	9 cut(s)	38, 60, 66, 96, 161, 273, 336, 356, 362
SinI	GGWCC	1 cut(s)	228
SseBI	AGGCCT	1 cut(s)	374
SsiI	CCGC	4 cut(s)	48, 86, 256, 287
SspMI	CTAG	1 cut(s)	351
StuI	AGGCCT	1 cut(s)	374
StyD4I	CCNGG	1 cut(s)	330
TaiI	ACGT	2 cut(s)	96, 273
TaqI	TCGA	3 cut(s)	102, 141, 162
TauI	GCSGC	2 cut(s)	259, 289
Tru1I	TTAA	1 cut(s)	397
Tru9I	TTAA	1 cut(s)	397
TseI	GCWGC	1 cut(s)	71
TspDTI	ATGAA	1 cut(s)	6
TspGWI	ACGGA	3 cut(s)	56, 235, 261
VpaK11BI	GGWCC	1 cut(s)	228
XmiI	GTMKAC	1 cut(s)	30
XspI	CTAG	1 cut(s)	351

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.