Prupe.7G142300_v2.0.a1

Hydroxyproline-rich glycoprotein family protein

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
Physical Location & Seq
Reverse (-)
15723393 .. 15728315
4923 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G142300.1

Sequence Viewer

Length: 1500 bp
ATGGCATTCTCGTTTTACTCCACGCCACAGCCACAGCCACAGCAACAGCAGCAGTCGCTGTTTCAAACTCAGCAGCCCTCACAGCTGTTTCCGCAAAGCAGTCCCTTTTTCTCACAACAACAACAGCAACAGCCGCAGCAGCAATTTCAGCCACAGCCGCTTCAATTTCAGCAGCAGCAGCAGCAGCAGCAGCAACAACAGCAACAGCAGCAGCAGATGTTTTTGTTTACGAATGACAAGGCTCCGGCGAGTTATAGTACCAAGTGGGCTGATCTCCATCCCGATTCCCAGAAAATTCTTCTTCAGATTGAGGAACGGATACTGGGGCATAGGGATGAGAGTCAGAGGCTGGATCAATGTAGTCGTCTCTACGATTCTTCAGTTTCAAATGATACTTTCGAGCATGATGCCAGTCGTATCCTTCAGGAACTTGGGGGAATTGGTACTGCCATGGACCGACAGAAAGCTCTTCTGCATGAGTTGATGGCTATTGTGAAAGATATGTTACGGAACAGCGAGGTTTCTGTTCGTACTTTCATGATTTTACGCCCACGGTTTCTTCATCCAAATACAGGAGGTACTTCAAATGCCATTGCACCGTCACAGGCTTCTGGAGCAACTGTACCACCTGGTTCAAGTAGTCAACCAACAGCTACTTCTATAGTGCCAGTTTTTGATTTCTACAACGGGCTTCCAAGGAAACCGTCTCCCTTCCTACAGCAAACAATTGCAAGATTTGAGAAGTATCTTGTTGAGTGTCGTCAGTGGATTGAAGAATTAGAGCAGCTTCTTTTAGCCTCAGAGAGGAATTCTGCCAATGATGGCTCCTCATTGTTGCAGTCTCTTCCAAAAGTCATGTCAAATGTGCATGACTTTTTTGTTCACGTGGCAGCGAAGGTGGAGAGTATTCACCAGTACATTGTATCCATGAAATCAGCTTATCTTGCTAACCAGCGCCGCCTAGGGGATGGGAATGATCCATTTCTCGAGGCTGATCGCCGGGAAACAGCTAGGCAAGAAGCTGCTGCTAAGAGGGTGCATCCAACTTTGCATTTACCTGCAACTTCACAACCATCAACACAAGTTGCTGGATTGTTTGCCAGTTCAGGAACTCAGGGGGCATCACCTGCCCCCCAGATATCTACAGCTACTATTACAGCTTCCTCTGGGAGTGGACTCTCACTTTTCAATACCCCTTCTGCTCCATCTTCTTCCATGTCTTCCTCTATGTTTGCTACACCAATCACTTCTGGTCCTATATCTTCTCTTTTTGGATCATCCTCTGCTACGCCTCAGACGTCACTGTTTAGTTCTTCCTCAGCATCTTTGTTTGGAGCTGCTTCAACTCCCTCTCTGCTAGGAAATACTGCTGCGGCCTTCGGTTCAACTACTCCTATTGGAAGCTCATTATTTGCTTCAGGTGCTCCTGCAACAGGGATGGGGTCTAGCTTTACTTCATCGAAATCAACAAAATCAAGGGGTCGGGGTGGCCGACGTTAG

Protein Analysis

500

Amino Acids

54.18

Weight (kDa)

9.03

Isoelectric Point (pI)

70.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0013560)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1135
AatII GACGTC 1 cut(s) 1301
Acc36I ACCTGC 2 cut(s) 1066, 1135
AciI CCGC 5 cut(s) 92, 134, 158, 958, 1373
AclWI GGATC 3 cut(s) 360, 971, 1282
AcoI YGGCCR 1 cut(s) 1489
AcsI RAATTY 2 cut(s) 294, 808
AcuI CTGAAG 4 cut(s) 287, 363, 407, 1401
AcvI CACGTG 1 cut(s) 886
AcyI GRCGYC 1 cut(s) 1298
AfaI GTAC 6 cut(s) 259, 445, 532, 580, 624, 917
AfiI CCNNNNNNNGG 4 cut(s) 572, 804, 964, 1433
AgsI TTSAA 9 cut(s) 65, 164, 387, 585, 636, 773, 1189, 1344, 1386
AjnI CCWGG 1 cut(s) 628
AjuI GAANNNNNNNTTGG 2 cut(s) 640, 672
Alw21I GWGCWC 1 cut(s) 1426
Alw26I GTCTC 3 cut(s) 371, 711, 846
AlwI GGATC 3 cut(s) 360, 971, 1282
AlwNI CAGNNNCTG 2 cut(s) 58, 349
Ama87I CYCGRG 1 cut(s) 986
AoxI GGCC 2 cut(s) 1374, 1489
ApoI RAATTY 2 cut(s) 294, 808
ArsI GACNNNNNNTTYG 2 cut(s) 842, 874
AspA2I CCTAGG 1 cut(s) 961
AspLEI GCGC 1 cut(s) 957
AspS9I GGNCC 2 cut(s) 454, 1253
AsuC2I CCSGG 1 cut(s) 1001
AsuHPI GGTGA 2 cut(s) 902, 1116
AvaI CYCGRG 1 cut(s) 986
AvaII GGWCC 2 cut(s) 454, 1253
AvrII CCTAGG 1 cut(s) 961
BbrPI CACGTG 1 cut(s) 886
BbsI GAAGAC 1 cut(s) 1212
Bbv12I GWGCWC 1 cut(s) 1426
BbvCI CCTCAGC 1 cut(s) 1318
BccI CCATC 7 cut(s) 285, 478, 815, 962, 1081, 1213, 1432
BcgI CGANNNNNNTGC 2 cut(s) 389, 423
BciT130I CCWGG 1 cut(s) 630
BciVI GTATCC 3 cut(s) 312, 428, 934
BcnI CCSGG 1 cut(s) 1001
BcoDI GTCTC 3 cut(s) 371, 711, 846
BfaI CTAG 4 cut(s) 962, 1011, 1358, 1446
BfmI CTRYAG 3 cut(s) 660, 716, 1143
BfoI RGCGCY 1 cut(s) 958
BfuAI ACCTGC 2 cut(s) 1066, 1135
BfuI GTATCC 3 cut(s) 312, 428, 934
BlnI CCTAGG 1 cut(s) 961
Bme1390I CCNGG 2 cut(s) 630, 1001
Bme18I GGWCC 2 cut(s) 454, 1253
BmeT110I CYCGRG 1 cut(s) 986
BmgT120I GGNCC 2 cut(s) 454, 1253
BmiI GGNNCC 2 cut(s) 243, 826
BmrFI CCNGG 2 cut(s) 630, 1001
BmrI ACTGGG 1 cut(s) 332
BmsI GCATC 4 cut(s) 397, 1048, 1130, 1331
BmuI ACTGGG 1 cut(s) 332
BpiI GAAGAC 1 cut(s) 1212
BpmI CTGGAG 1 cut(s) 633
Bpu10I CCTNAGC 1 cut(s) 1318
BpuMI CCSGG 1 cut(s) 1001
BsaAI YACGTR 1 cut(s) 886
BsaBI GATNNNNATC 1 cut(s) 276
BsaHI GRCGYC 1 cut(s) 1298
BsaJI CCNNGG 4 cut(s) 450, 551, 695, 961
BsaXI ACNNNNNCTCC 2 cut(s) 606, 636
Bsc4I CCNNNNNNNGG 4 cut(s) 572, 804, 964, 1433
Bse1I ACTGG 5 cut(s) 327, 411, 668, 913, 1101
Bse3DI GCAATG 1 cut(s) 591
Bse8I GATNNNNATC 1 cut(s) 276
BseBI CCWGG 1 cut(s) 630
BseDI CCNNGG 4 cut(s) 450, 551, 695, 961
BseGI GGATG 7 cut(s) 277, 340, 562, 973, 1039, 1277, 1443
BseJI GATNNNNATC 1 cut(s) 276
BseLI CCNNNNNNNGG 4 cut(s) 572, 804, 964, 1433
BseMI GCAATG 1 cut(s) 591
BseMII CTCAG 5 cut(s) 83, 813, 1127, 1307, 1332
BseNI ACTGG 5 cut(s) 327, 411, 668, 913, 1101
BseRI GAGGAG 1 cut(s) 817
BshFI GGCC 2 cut(s) 1376, 1491
BsiHKAI GWGCWC 1 cut(s) 1426
BsiHKCI CYCGRG 1 cut(s) 986
BsiSI CCGG 2 cut(s) 245, 1000
BslFI GGGAC 1 cut(s) 87
BslI CCNNNNNNNGG 4 cut(s) 572, 804, 964, 1433
BsmAI GTCTC 3 cut(s) 371, 711, 846
BsmBI CGTCTC 2 cut(s) 371, 711
BsmFI GGGAC 1 cut(s) 87
BsmI GAATGC 1 cut(s) 5
BsnI GGCC 2 cut(s) 1376, 1491
BsoBI CYCGRG 1 cut(s) 986
Bsp1286I GDGCHC 1 cut(s) 1426
Bsp143I GATC 5 cut(s) 271, 352, 976, 994, 1274
Bsp19I CCATGG 1 cut(s) 450
BspACI CCGC 5 cut(s) 92, 134, 158, 958, 1373
BspANI GGCC 2 cut(s) 1376, 1491
BspCNI CTCAG 5 cut(s) 82, 812, 1126, 1306, 1331
BspHI TCATGA 1 cut(s) 537
BspLI GGNNCC 2 cut(s) 243, 826
BspMI ACCTGC 2 cut(s) 1066, 1135
BspPI GGATC 3 cut(s) 360, 971, 1282
BspQI GCTCTTC 1 cut(s) 474
BsrDI GCAATG 1 cut(s) 591
BsrI ACTGG 5 cut(s) 327, 411, 668, 913, 1101
BssECI CCNNGG 4 cut(s) 450, 551, 695, 961
BssMI GATC 5 cut(s) 271, 352, 976, 994, 1274
BssNI GRCGYC 1 cut(s) 1298
BssT1I CCWWGG 3 cut(s) 450, 695, 961
Bst2UI CCWGG 1 cut(s) 630
Bst4CI ACNGT 5 cut(s) 555, 600, 622, 705, 1305
Bst6I CTCTTC 2 cut(s) 474, 849
BstACI GRCGYC 1 cut(s) 1298
BstAPI GCANNNNNTGC 1 cut(s) 1127
BstBAI YACGTR 1 cut(s) 886
BstDEI CTNAG 6 cut(s) 69, 799, 1029, 1113, 1293, 1318
BstDSI CCRYGG 2 cut(s) 450, 551
BstENI CCTNNNNNAGG 2 cut(s) 802, 1431
BstF5I GGATG 7 cut(s) 277, 340, 562, 973, 1039, 1277, 1443
BstH2I RGCGCY 1 cut(s) 958
BstHHI GCGC 1 cut(s) 957
BstKTI GATC 5 cut(s) 274, 355, 979, 997, 1277
BstMAI GTCTC 3 cut(s) 371, 711, 846
BstMBI GATC 5 cut(s) 271, 352, 976, 994, 1274
BstNI CCWGG 1 cut(s) 630
BstSCI CCNGG 2 cut(s) 628, 999
BstSFI CTRYAG 3 cut(s) 660, 716, 1143
BstV2I GAAGAC 1 cut(s) 1212
BsuI GTATCC 3 cut(s) 312, 428, 934
BsuRI GGCC 2 cut(s) 1376, 1491
BtgI CCRYGG 2 cut(s) 450, 551
BtsCI GGATG 7 cut(s) 277, 340, 562, 973, 1039, 1277, 1443
BtsIMutI CAGTG 2 cut(s) 770, 1301
BveI ACCTGC 2 cut(s) 1066, 1135
CaiI CAGNNNCTG 2 cut(s) 58, 349
CciI TCATGA 1 cut(s) 537
CfoI GCGC 1 cut(s) 957
Cfr13I GGNCC 2 cut(s) 454, 1253
CsiI ACCWGGT 1 cut(s) 628
Csp6I GTAC 6 cut(s) 258, 444, 531, 579, 623, 916
CviAII CATG 8 cut(s) 404, 451, 476, 538, 856, 869, 928, 1216
CviQI GTAC 6 cut(s) 258, 444, 531, 579, 623, 916
DdeI CTNAG 6 cut(s) 69, 799, 1029, 1113, 1293, 1318
DpnI GATC 5 cut(s) 273, 354, 978, 996, 1276
DpnII GATC 5 cut(s) 271, 352, 976, 994, 1274
EaeI YGGCCR 1 cut(s) 1489
Eam1104I CTCTTC 2 cut(s) 474, 849
EarI CTCTTC 2 cut(s) 474, 849
Eco130I CCWWGG 3 cut(s) 450, 695, 961
Eco32I GATATC 1 cut(s) 1140
Eco47I GGWCC 2 cut(s) 454, 1253
Eco57I CTGAAG 4 cut(s) 287, 363, 407, 1401
Eco72I CACGTG 1 cut(s) 886
Eco88I CYCGRG 1 cut(s) 986
EcoNI CCTNNNNNAGG 2 cut(s) 802, 1431
EcoRI GAATTC 1 cut(s) 808
EcoRII CCWGG 1 cut(s) 628
EcoRV GATATC 1 cut(s) 1140
EcoT14I CCWWGG 3 cut(s) 450, 695, 961
ErhI CCWWGG 3 cut(s) 450, 695, 961
Esp3I CGTCTC 2 cut(s) 371, 711
FaeI CATG 8 cut(s) 407, 454, 479, 541, 859, 872, 931, 1219
FaqI GGGAC 1 cut(s) 87
FatI CATG 8 cut(s) 403, 450, 475, 537, 855, 868, 927, 1215
FokI GGATG 7 cut(s) 264, 347, 549, 980, 1026, 1264, 1450
FspBI CTAG 4 cut(s) 962, 1011, 1358, 1446
GlaI GCGC 1 cut(s) 956
GsuI CTGGAG 1 cut(s) 633
HaeII RGCGCY 1 cut(s) 958
HaeIII GGCC 2 cut(s) 1376, 1491
HapII CCGG 2 cut(s) 245, 1000
HhaI GCGC 1 cut(s) 957
Hin1I GRCGYC 1 cut(s) 1298
Hin1II CATG 8 cut(s) 407, 454, 479, 541, 859, 872, 931, 1219
Hin6I GCGC 1 cut(s) 955
HinP1I GCGC 1 cut(s) 955
HincII GTYRAC 1 cut(s) 644
HindII GTYRAC 1 cut(s) 644
HinfI GANTC 4 cut(s) 284, 340, 374, 1176
HpaII CCGG 2 cut(s) 245, 1000
HphI GGTGA 2 cut(s) 902, 1116
Hpy166II GTNNAC 4 cut(s) 228, 644, 883, 1175
Hpy188I TCNGA 4 cut(s) 306, 345, 802, 1296
Hpy188III TCNNGA 6 cut(s) 281, 425, 538, 612, 986, 1107
Hpy8I GTNNAC 4 cut(s) 228, 644, 883, 1175
Hpy99I CGWCG 1 cut(s) 1497
HpyAV CCTTC 5 cut(s) 431, 721, 889, 1206, 1387
HpyCH4III ACNGT 5 cut(s) 555, 600, 622, 705, 1305
HpyCH4IV ACGT 3 cut(s) 885, 1298, 1495
HpyCH4V TGCA 9 cut(s) 475, 596, 731, 838, 868, 1039, 1051, 1061, 1430
HpyF3I CTNAG 6 cut(s) 69, 799, 1029, 1113, 1293, 1318
HpySE526I ACGT 3 cut(s) 885, 1298, 1495
Hsp92I GRCGYC 1 cut(s) 1298
Hsp92II CATG 8 cut(s) 407, 454, 479, 541, 859, 872, 931, 1219
HspAI GCGC 1 cut(s) 955
Kzo9I GATC 5 cut(s) 271, 352, 976, 994, 1274
LguI GCTCTTC 1 cut(s) 474
LmnI GCTCC 6 cut(s) 247, 614, 830, 1207, 1334, 1429
LweI GCATC 4 cut(s) 397, 1048, 1130, 1331
MabI ACCWGGT 1 cut(s) 628
MaeI CTAG 4 cut(s) 962, 1011, 1358, 1446
MaeII ACGT 3 cut(s) 885, 1298, 1495
MaeIII GTNAC 3 cut(s) 504, 600, 1299
MalI GATC 5 cut(s) 273, 354, 978, 996, 1276
MboI GATC 5 cut(s) 271, 352, 976, 994, 1274
MfeI CAATTG 1 cut(s) 726
MhlI GDGCHC 1 cut(s) 1426
MluCI AATT 7 cut(s) 143, 164, 294, 438, 726, 776, 808
MlyI GAGTC 2 cut(s) 349, 1170
MmeI TCCRAC 1 cut(s) 1067
MslI CAYNNNNRTG 1 cut(s) 333
MspA1I CMGCKG 1 cut(s) 85
MspI CCGG 2 cut(s) 245, 1000
MspR9I CCNGG 2 cut(s) 630, 1001
MunI CAATTG 1 cut(s) 726
Mva1269I GAATGC 1 cut(s) 5
MvaI CCWGG 1 cut(s) 630
NciI CCSGG 1 cut(s) 1001
NcoI CCATGG 1 cut(s) 450
NdeII GATC 5 cut(s) 271, 352, 976, 994, 1274
NlaIII CATG 8 cut(s) 407, 454, 479, 541, 859, 872, 931, 1219
NlaIV GGNNCC 2 cut(s) 243, 826
NmuCI GTSAC 2 cut(s) 600, 1299
PaeR7I CTCGAG 1 cut(s) 986
PagI TCATGA 1 cut(s) 537
PaqCI CACCTGC 1 cut(s) 1135
PciSI GCTCTTC 1 cut(s) 474
PcsI WCGNNNNNNNCGW 2 cut(s) 1295, 1489
PctI GAATGC 1 cut(s) 5
PfeI GAWTC 2 cut(s) 284, 374
PleI GAGTC 2 cut(s) 348, 1170
PmaCI CACGTG 1 cut(s) 886
PmlI CACGTG 1 cut(s) 886
PpsI GAGTC 2 cut(s) 348, 1170
Ppu21I YACGTR 1 cut(s) 886
Psp6I CCWGG 1 cut(s) 628
PspCI CACGTG 1 cut(s) 886
PspGI CCWGG 1 cut(s) 628
PspN4I GGNNCC 2 cut(s) 243, 826
PspPI GGNCC 2 cut(s) 454, 1253
PstNI CAGNNNCTG 2 cut(s) 58, 349
PvuII CAGCTG 1 cut(s) 85
RsaI GTAC 6 cut(s) 259, 445, 532, 580, 624, 917
RsaNI GTAC 6 cut(s) 258, 444, 531, 579, 623, 916
RseI CAYNNNNRTG 1 cut(s) 333
SapI GCTCTTC 1 cut(s) 474
Sau3AI GATC 5 cut(s) 271, 352, 976, 994, 1274
Sau96I GGNCC 2 cut(s) 454, 1253
SchI GAGTC 2 cut(s) 349, 1170
ScrFI CCNGG 2 cut(s) 630, 1001
SduI GDGCHC 1 cut(s) 1426
SexAI ACCWGGT 1 cut(s) 628
SfaNI GCATC 4 cut(s) 397, 1048, 1130, 1331
SfcI CTRYAG 3 cut(s) 660, 716, 1143
Sfr274I CTCGAG 1 cut(s) 986
SinI GGWCC 2 cut(s) 454, 1253
SlaI CTCGAG 1 cut(s) 986
SmiMI CAYNNNNRTG 1 cut(s) 333
SmlI CTYRAG 1 cut(s) 986
SmoI CTYRAG 1 cut(s) 986
Sse9I AATT 7 cut(s) 143, 164, 294, 438, 726, 776, 808
SsiI CCGC 5 cut(s) 92, 134, 158, 958, 1373
SspMI CTAG 4 cut(s) 962, 1011, 1358, 1446
StyD4I CCNGG 2 cut(s) 628, 999
StyI CCWWGG 3 cut(s) 450, 695, 961
TaaI ACNGT 5 cut(s) 555, 600, 622, 705, 1305
TaiI ACGT 3 cut(s) 888, 1301, 1498
TaqI TCGA 3 cut(s) 399, 987, 1460
TaqII GACCGA 1 cut(s) 471
TasI AATT 7 cut(s) 143, 164, 294, 438, 726, 776, 808
TatI WGTACW 1 cut(s) 915
TauI GCSGC 4 cut(s) 136, 160, 960, 1376
TfiI GAWTC 2 cut(s) 284, 374
TscAI CASTG 2 cut(s) 770, 1308
TseFI GTSAC 2 cut(s) 600, 1299
Tsp45I GTSAC 2 cut(s) 600, 1299
TspDTI ATGAA 4 cut(s) 526, 551, 944, 1446
TspGWI ACGGA 2 cut(s) 331, 523
TspRI CASTG 2 cut(s) 770, 1308
VpaK11BI GGWCC 2 cut(s) 454, 1253
XagI CCTNNNNNAGG 2 cut(s) 802, 1431
XapI RAATTY 2 cut(s) 294, 808
XhoI CTCGAG 1 cut(s) 986
XmaJI CCTAGG 1 cut(s) 961
XspI CTAG 4 cut(s) 962, 1011, 1358, 1446
ZraI GACGTC 1 cut(s) 1299
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.