Rw2G013020

Hydroxyproline-rich glycoprotein family protein

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
Physical Location & Seq
Forward (+)
13568878 .. 13573481
4604 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G013020.1

Sequence Viewer

Length: 1581 bp
ATGTCGTTCTCCCTATTCTCATCGGCGCAACCGCAGCAAACGCCGCAGCCACAATCCTCCCTCTTCCAAACCCCAAGCCTCTTCCAAACCCAACAATCCCCAAACCCCTTTCAGCAAACCCAGCAATCCCCAAACCCCTTCCAGCAATCCCCGAGCCTTTTCCAGCAAACTCAGCAGTCCCCGAGCCCTTTTCAGCAAAGCACTTCCTTGTTCTCGCAACCCCAGCAGCAGCAACAGCAACAGTCGCCGTTTCAGCCGCAGCAGTTTCAGTCTCAGTCGCCGCTTCAATTTCAGCCGCCGCCGCAGCAGCAACAGCAGCAGCAGTTGTTTTTGTTTACTAATGACAAGACTCCGGCGAGTTACGGCACCAAGTGGGCCGATTTACACCCCGATTCGCAGAAGATTCTGCTCCAGATTGAGGAGCACATACTGGGGTACAGGGATGAGAGCCAAAGGCTGGATCAGTCTAGTCGTCTCTACGATTCTTCAGTTTCCAATGATGGGTTTGAGCAGGATGCAAGTCGTATCATTCAGGAGCTTGGGGGAATTGGTACTGCCATGGACCGACAGAAAGCTCTGCTGCAGGAGCTGATGGCTACCGTGAAAGAGATGTTACGGAACAGTGAGGTTGCTGTACGTTCTTTCATGATGCTACGTCCAAGGTTTCTTCGTCCAAATGCAGGAGGTACTTCAAATGGCACTGCAGCGTCACAGGCTCCTGGAGCAACAGAAACACCAGGCTCAACTAGTCAACCAACAACTACTTCTATAGTTCCAGTTTTTGACTTCTATAATGGAGTTCCAAGGAAACCATCCCCCTTCTTACAGCACACAATTGCAAGATTTGAGAAATATCTTGGTGAGTGCCGCCAATGGATTGAAGAAATAGAGCAGCTCCTTTTAAATTCAGAGAGGAACTCTTCCAATGATGGATCCTCATTGTTGCAATCTCTCCCAAAAGTCATGTCAAATGTGCATGACTTTTTTGTTCACGTGGCTGCTAAGGTGGAGAGTATTCATCAGTACATTGTATCCATGAAAGCAGCTTATCTTGCTAACCAGCGTCGCCTAGGGGATGGGAATGACCCATTTCTTGAGGCTGATAGGCGGGAAACAGCAAGGCAAGAAGCTGCTGCTAAGAGAGTGCATCCAACTTTGCATTTACCTGCAATTTCACAACCATCAACACAAGTGGCTGGATTGTTGGCTAGCTCAGGAAGTCAGGCGGCATCAACGGCTCCACAGACATCTGCAGCTACTACAACAGCTTCATCTGGGAGTGCATTCTCACTTTTCAGTACACCTTCCGCTCCATCTTCTTCATCCATGGCTTCATCTTTGTTTGCAACACCAACCACTCCTGCTCCAGTATCTTCTCTTTTTGGACCATCATCTGCTACGCCCCAGACATCAACTGCTTCTCAGCTAGGCAATACTGCTCAGGCCTTGGGTTCTACTACTCCTGTGGGAGGTTCATTATTTTGTACTCCATTTGCTTCCGGTCCTGCAACATCATTTGGGTCTAGCTTTGGGGCTGCAACGAAATCAACAAAGCCAAAAACTCGGTCTAGCCGACGTTAG

Protein Analysis

526

Amino Acids

57.0

Weight (kDa)

8.8

Isoelectric Point (pI)

81.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0013560)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1174
AccB1I GGYRCC 1 cut(s) 365
AccB7I CCANNNNNTGG 1 cut(s) 457
AccBSI CCGCTC 1 cut(s) 1310
AclWI GGATC 3 cut(s) 468, 927, 940
AcsI RAATTY 1 cut(s) 904
AcuI CTGAAG 1 cut(s) 471
AcvI CACGTG 1 cut(s) 994
AdeI CACNNNGTG 1 cut(s) 372
AfaI GTAC 7 cut(s) 437, 553, 636, 688, 1025, 1300, 1486
AfiI CCNNNNNNNGG 5 cut(s) 418, 457, 501, 680, 1469
AgsI TTSAA 3 cut(s) 287, 693, 881
AhlI ACTAGT 1 cut(s) 746
AjnI CCWGG 2 cut(s) 718, 736
AjuI GAANNNNNNNTTGG 2 cut(s) 748, 780
Alw21I GWGCWC 1 cut(s) 426
Alw26I GTCTC 2 cut(s) 276, 479
AlwI GGATC 3 cut(s) 468, 927, 940
AlwNI CAGNNNCTG 1 cut(s) 589
Ama87I CYCGRG 2 cut(s) 151, 181
AoxI GGCC 2 cut(s) 375, 1443
ApoI RAATTY 1 cut(s) 904
ArsI GACNNNNNNTTYG 3 cut(s) 950, 982, 1550
AspA2I CCTAGG 1 cut(s) 1069
AspLEI GCGC 1 cut(s) 28
AspS9I GGNCC 4 cut(s) 375, 562, 1385, 1502
AsuHPI GGTGA 1 cut(s) 872
AsuNHI GCTAGC 1 cut(s) 1208
AvaI CYCGRG 2 cut(s) 151, 181
AvaII GGWCC 3 cut(s) 562, 1385, 1502
AvrII CCTAGG 1 cut(s) 1069
BamHI GGATCC 1 cut(s) 932
BanI GGYRCC 1 cut(s) 365
BanII GRGCYC 1 cut(s) 188
BbrPI CACGTG 1 cut(s) 994
Bbv12I GWGCWC 1 cut(s) 426
BccI CCATC 8 cut(s) 494, 586, 820, 923, 1070, 1189, 1321, 1396
BceAI ACGGC 3 cut(s) 232, 379, 1251
BciT130I CCWGG 2 cut(s) 720, 738
BciVI GTATCC 1 cut(s) 1042
BcoDI GTCTC 2 cut(s) 276, 479
BcuI ACTAGT 1 cut(s) 746
BfaI CTAG 7 cut(s) 468, 747, 1070, 1209, 1427, 1524, 1569
BfmI CTRYAG 4 cut(s) 581, 702, 768, 1251
BfuAI ACCTGC 1 cut(s) 1174
BfuI GTATCC 1 cut(s) 1042
BlnI CCTAGG 1 cut(s) 1069
Bme1390I CCNGG 2 cut(s) 720, 738
Bme18I GGWCC 3 cut(s) 562, 1385, 1502
BmeT110I CYCGRG 2 cut(s) 151, 181
BmgT120I GGNCC 4 cut(s) 375, 562, 1385, 1502
BmiI GGNNCC 4 cut(s) 367, 717, 934, 1239
BmrFI CCNGG 2 cut(s) 720, 738
BmrI ACTGGG 1 cut(s) 440
BmsI GCATC 4 cut(s) 505, 639, 1156, 1238
BmtI GCTAGC 1 cut(s) 1212
BmuI ACTGGG 1 cut(s) 440
BplI GAGNNNNNCTC 2 cut(s) 902, 934
BpmI CTGGAG 3 cut(s) 395, 741, 1350
Bpu10I CCTNAGC 3 cut(s) 1002, 1213, 1440
BpuEI CTTGAG 1 cut(s) 1115
BsaAI YACGTR 1 cut(s) 994
BsaJI CCNNGG 6 cut(s) 558, 659, 803, 1069, 1326, 1446
BsaWI WCCGGW 1 cut(s) 1499
BsaXI ACNNNNNCTCC 2 cut(s) 1348, 1378
Bsc4I CCNNNNNNNGG 5 cut(s) 418, 457, 501, 680, 1469
Bse1I ACTGG 3 cut(s) 435, 776, 1367
BseBI CCWGG 2 cut(s) 720, 738
BseDI CCNNGG 6 cut(s) 558, 659, 803, 1069, 1326, 1446
BseGI GGATG 6 cut(s) 448, 520, 812, 1081, 1147, 1322
BseLI CCNNNNNNNGG 5 cut(s) 418, 457, 501, 680, 1469
BseMII CTCAG 5 cut(s) 185, 287, 1227, 1436, 1454
BseNI ACTGG 3 cut(s) 435, 776, 1367
BseRI GAGGAG 1 cut(s) 434
BseYI CCCAGC 2 cut(s) 120, 222
BshFI GGCC 2 cut(s) 377, 1445
BshNI GGYRCC 1 cut(s) 365
BsiHKAI GWGCWC 1 cut(s) 426
BsiHKCI CYCGRG 2 cut(s) 151, 181
BsiSI CCGG 2 cut(s) 353, 1500
BslFI GGGAC 1 cut(s) 163
BslI CCNNNNNNNGG 5 cut(s) 418, 457, 501, 680, 1469
BsmAI GTCTC 2 cut(s) 276, 479
BsmBI CGTCTC 1 cut(s) 479
BsmFI GGGAC 1 cut(s) 163
BsmI GAATGC 1 cut(s) 1283
BsnI GGCC 2 cut(s) 377, 1445
BsoBI CYCGRG 2 cut(s) 151, 181
Bsp1286I GDGCHC 2 cut(s) 188, 426
Bsp143I GATC 2 cut(s) 460, 932
Bsp19I CCATGG 2 cut(s) 558, 1326
BspANI GGCC 2 cut(s) 377, 1445
BspCNI CTCAG 5 cut(s) 184, 286, 1226, 1435, 1453
BspHI TCATGA 1 cut(s) 645
BspLI GGNNCC 4 cut(s) 367, 717, 934, 1239
BspMAI CTGCAG 3 cut(s) 585, 706, 1255
BspMI ACCTGC 1 cut(s) 1174
BspOI GCTAGC 1 cut(s) 1212
BspPI GGATC 3 cut(s) 468, 927, 940
BspT107I GGYRCC 1 cut(s) 365
BsrBI CCGCTC 1 cut(s) 1310
BsrI ACTGG 3 cut(s) 435, 776, 1367
BssECI CCNNGG 6 cut(s) 558, 659, 803, 1069, 1326, 1446
BssMI GATC 2 cut(s) 460, 932
BssT1I CCWWGG 6 cut(s) 558, 659, 803, 1069, 1326, 1446
Bst2UI CCWGG 2 cut(s) 720, 738
Bst4CI ACNGT 3 cut(s) 243, 601, 623
Bst6I CTCTTC 3 cut(s) 68, 86, 925
BstBAI YACGTR 1 cut(s) 994
BstC8I GCNNGC 1 cut(s) 1210
BstDEI CTNAG 7 cut(s) 171, 273, 1002, 1137, 1213, 1422, 1440
BstDSI CCRYGG 2 cut(s) 558, 1326
BstENI CCTNNNNNAGG 1 cut(s) 1467
BstF5I GGATG 6 cut(s) 448, 520, 812, 1081, 1147, 1322
BstHHI GCGC 1 cut(s) 28
BstKTI GATC 2 cut(s) 463, 935
BstMAI GTCTC 2 cut(s) 276, 479
BstMBI GATC 2 cut(s) 460, 932
BstNI CCWGG 2 cut(s) 720, 738
BstSCI CCNGG 2 cut(s) 718, 736
BstSFI CTRYAG 4 cut(s) 581, 702, 768, 1251
BstX2I RGATCY 1 cut(s) 932
BstYI RGATCY 1 cut(s) 932
BsuI GTATCC 1 cut(s) 1042
BsuRI GGCC 2 cut(s) 377, 1445
BtgI CCRYGG 2 cut(s) 558, 1326
BtsCI GGATG 6 cut(s) 448, 520, 812, 1081, 1147, 1322
BtsI GCAGTG 1 cut(s) 699
BtsIMutI CAGTG 2 cut(s) 628, 699
BveI ACCTGC 1 cut(s) 1174
Cac8I GCNNGC 1 cut(s) 1210
CaiI CAGNNNCTG 1 cut(s) 589
CciI TCATGA 1 cut(s) 645
CfoI GCGC 1 cut(s) 28
Cfr13I GGNCC 4 cut(s) 375, 562, 1385, 1502
CseI GACGC 2 cut(s) 696, 1052
Csp6I GTAC 7 cut(s) 436, 552, 635, 687, 1024, 1299, 1485
CspCI CAANNNNNGTGG 2 cut(s) 1173, 1208
CviAII CATG 6 cut(s) 559, 646, 964, 977, 1036, 1327
CviQI GTAC 7 cut(s) 436, 552, 635, 687, 1024, 1299, 1485
DdeI CTNAG 7 cut(s) 171, 273, 1002, 1137, 1213, 1422, 1440
DpnI GATC 2 cut(s) 462, 934
DpnII GATC 2 cut(s) 460, 932
DraI TTTAAA 1 cut(s) 903
DraIII CACNNNGTG 1 cut(s) 372
Eam1104I CTCTTC 3 cut(s) 68, 86, 925
EarI CTCTTC 3 cut(s) 68, 86, 925
Eco130I CCWWGG 6 cut(s) 558, 659, 803, 1069, 1326, 1446
Eco147I AGGCCT 1 cut(s) 1445
Eco24I GRGCYC 1 cut(s) 188
Eco47I GGWCC 3 cut(s) 562, 1385, 1502
Eco57I CTGAAG 1 cut(s) 471
Eco72I CACGTG 1 cut(s) 994
Eco88I CYCGRG 2 cut(s) 151, 181
EcoNI CCTNNNNNAGG 1 cut(s) 1467
EcoRII CCWGG 2 cut(s) 718, 736
EcoT14I CCWWGG 6 cut(s) 558, 659, 803, 1069, 1326, 1446
EcoT38I GRGCYC 1 cut(s) 188
ErhI CCWWGG 6 cut(s) 558, 659, 803, 1069, 1326, 1446
Esp3I CGTCTC 1 cut(s) 479
FaeI CATG 6 cut(s) 562, 649, 967, 980, 1039, 1330
FaiI YATR 9 cut(s) 428, 560, 647, 770, 792, 965, 978, 1037, 1328
FaqI GGGAC 1 cut(s) 163
FatI CATG 6 cut(s) 558, 645, 963, 976, 1035, 1326
FauI CCCGC 1 cut(s) 1101
FokI GGATG 6 cut(s) 455, 527, 799, 1088, 1134, 1309
FriOI GRGCYC 1 cut(s) 188
FspBI CTAG 7 cut(s) 468, 747, 1070, 1209, 1427, 1524, 1569
GlaI GCGC 1 cut(s) 27
GsaI CCCAGC 2 cut(s) 124, 226
GsuI CTGGAG 3 cut(s) 395, 741, 1350
HaeIII GGCC 2 cut(s) 377, 1445
HapII CCGG 2 cut(s) 353, 1500
HgaI GACGC 2 cut(s) 696, 1052
HhaI GCGC 1 cut(s) 28
Hin1II CATG 6 cut(s) 562, 649, 967, 980, 1039, 1330
Hin6I GCGC 1 cut(s) 26
HinP1I GCGC 1 cut(s) 26
HincII GTYRAC 1 cut(s) 752
HindII GTYRAC 1 cut(s) 752
HinfI GANTC 4 cut(s) 349, 392, 403, 482
HpaII CCGG 2 cut(s) 353, 1500
HphI GGTGA 1 cut(s) 872
Hpy166II GTNNAC 4 cut(s) 336, 752, 991, 1301
Hpy188I TCNGA 1 cut(s) 910
Hpy188III TCNNGA 5 cut(s) 412, 533, 646, 1094, 1215
Hpy8I GTNNAC 4 cut(s) 336, 752, 991, 1301
Hpy99I CGWCG 2 cut(s) 1068, 1578
HpyAV CCTTC 3 cut(s) 148, 829, 1314
HpyCH4III ACNGT 3 cut(s) 243, 601, 623
HpyCH4IV ACGT 4 cut(s) 637, 655, 993, 1576
HpyF3I CTNAG 7 cut(s) 171, 273, 1002, 1137, 1213, 1422, 1440
HpySE526I ACGT 4 cut(s) 637, 655, 993, 1576
Hsp92II CATG 6 cut(s) 562, 649, 967, 980, 1039, 1330
HspAI GCGC 1 cut(s) 26
Kzo9I GATC 2 cut(s) 460, 932
LweI GCATC 4 cut(s) 505, 639, 1156, 1238
MaeI CTAG 7 cut(s) 468, 747, 1070, 1209, 1427, 1524, 1569
MaeII ACGT 4 cut(s) 637, 655, 993, 1576
MaeIII GTNAC 3 cut(s) 359, 612, 708
MalI GATC 2 cut(s) 462, 934
MbiI CCGCTC 1 cut(s) 1310
MboI GATC 2 cut(s) 460, 932
MfeI CAATTG 1 cut(s) 834
MflI RGATCY 1 cut(s) 932
MhlI GDGCHC 2 cut(s) 188, 426
MluCI AATT 5 cut(s) 287, 546, 834, 904, 1170
MlyI GAGTC 1 cut(s) 343
MmeI TCCRAC 1 cut(s) 1175
MseI TTAA 1 cut(s) 902
MspI CCGG 2 cut(s) 353, 1500
MspR9I CCNGG 2 cut(s) 720, 738
MunI CAATTG 1 cut(s) 834
Mva1269I GAATGC 1 cut(s) 1283
MvaI CCWGG 2 cut(s) 720, 738
NcoI CCATGG 2 cut(s) 558, 1326
NdeII GATC 2 cut(s) 460, 932
NheI GCTAGC 1 cut(s) 1208
NlaIII CATG 6 cut(s) 562, 649, 967, 980, 1039, 1330
NlaIV GGNNCC 4 cut(s) 367, 717, 934, 1239
NmuCI GTSAC 1 cut(s) 708
PagI TCATGA 1 cut(s) 645
PceI AGGCCT 1 cut(s) 1445
PcsI WCGNNNNNNNCGW 1 cut(s) 1570
PctI GAATGC 1 cut(s) 1283
PfeI GAWTC 3 cut(s) 392, 403, 482
PflMI CCANNNNNTGG 1 cut(s) 457
PfoI TCCNGGA 1 cut(s) 718
PleI GAGTC 1 cut(s) 343
PmaCI CACGTG 1 cut(s) 994
PmlI CACGTG 1 cut(s) 994
PpsI GAGTC 1 cut(s) 343
Ppu21I YACGTR 1 cut(s) 994
Psp6I CCWGG 2 cut(s) 718, 736
PspCI CACGTG 1 cut(s) 994
PspFI CCCAGC 2 cut(s) 120, 222
PspGI CCWGG 2 cut(s) 718, 736
PspN4I GGNNCC 4 cut(s) 367, 717, 934, 1239
PspPI GGNCC 4 cut(s) 375, 562, 1385, 1502
PstI CTGCAG 3 cut(s) 585, 706, 1255
PstNI CAGNNNCTG 1 cut(s) 589
PsuI RGATCY 1 cut(s) 932
RsaI GTAC 7 cut(s) 437, 553, 636, 688, 1025, 1300, 1486
RsaNI GTAC 7 cut(s) 436, 552, 635, 687, 1024, 1299, 1485
SaqAI TTAA 1 cut(s) 902
Sau3AI GATC 2 cut(s) 460, 932
Sau96I GGNCC 4 cut(s) 375, 562, 1385, 1502
SchI GAGTC 1 cut(s) 343
ScrFI CCNGG 2 cut(s) 720, 738
SduI GDGCHC 2 cut(s) 188, 426
SfaNI GCATC 4 cut(s) 505, 639, 1156, 1238
SfcI CTRYAG 4 cut(s) 581, 702, 768, 1251
SinI GGWCC 3 cut(s) 562, 1385, 1502
SmlI CTYRAG 1 cut(s) 1094
SmoI CTYRAG 1 cut(s) 1094
SpeI ACTAGT 1 cut(s) 746
Sse9I AATT 5 cut(s) 287, 546, 834, 904, 1170
SseBI AGGCCT 1 cut(s) 1445
SspMI CTAG 7 cut(s) 468, 747, 1070, 1209, 1427, 1524, 1569
StuI AGGCCT 1 cut(s) 1445
StyD4I CCNGG 2 cut(s) 718, 736
StyI CCWWGG 6 cut(s) 558, 659, 803, 1069, 1326, 1446
TaaI ACNGT 3 cut(s) 243, 601, 623
TaiI ACGT 4 cut(s) 640, 658, 996, 1579
TaqII GACCGA 2 cut(s) 579, 1554
TasI AATT 5 cut(s) 287, 546, 834, 904, 1170
TatI WGTACW 3 cut(s) 1023, 1298, 1484
TauI GCSGC 8 cut(s) 46, 259, 283, 298, 301, 304, 870, 1229
TfiI GAWTC 3 cut(s) 392, 403, 482
Tru1I TTAA 1 cut(s) 902
Tru9I TTAA 1 cut(s) 902
TscAI CASTG 2 cut(s) 628, 706
TseFI GTSAC 1 cut(s) 708
Tsp45I GTSAC 1 cut(s) 708
TspDTI ATGAA 7 cut(s) 634, 1007, 1052, 1260, 1311, 1323, 1464
TspGWI ACGGA 1 cut(s) 631
TspRI CASTG 2 cut(s) 628, 706
Van91I CCANNNNNTGG 1 cut(s) 457
VpaK11BI GGWCC 3 cut(s) 562, 1385, 1502
XagI CCTNNNNNAGG 1 cut(s) 1467
XapI RAATTY 1 cut(s) 904
XmaJI CCTAGG 1 cut(s) 1069
XspI CTAG 7 cut(s) 468, 747, 1070, 1209, 1427, 1524, 1569
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.