AT4G37440

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0006015
Physical Location & Seq
Forward (+)
17601185 .. 17604086
2902 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G37440.3

Sequence Viewer

Length: 1416 bp
ATGGAGGTGAAGGAATCGAAGATAGATATGGATGATTCAGTCAATAAGGAGATTGGGGAATTACCAAAAGATATGCCTTGTACTAGTAACTATGAGGACCATAGTTTTCATAATCATGTTGAAGAAGATGTCACTGAGGATCTTCCTTGTGGTGGTGATGATATTGATGCTGATGCTTCTATTAAAAAAGAGGTTGCAGAGTTCGACGAGGACGAGGTTGATATATTGGAATGCAATGATAACATTGAGATTCAAGTCTCAGGGTGTGATGATGGGACTGATGGATATTCGAGTTCGTTTGGTGGAACGGATTCTGAACATGAGAATGATCAAGAAGTTGACTCCATGATTTGTAATGAGACTTCACTTCCTCTTTGGGTGAGAAAAAGGAAGCTGACTGATCATTGGAGGAGGTTTGTACAGCCTACTTTAATGTGGCGTTGCAAATGGATTGAACTCAAATACAAAGAACTTCAGAACCAAGCACAGAAGTACGACAAAGAAGTTGAAGAATATTACCAAGCCAAGAAGTTGGAGTTAGAAAATGTCAAATCAGAAGAACTTGGAGTAAAGGCTTTACCTCCTCTTCCATGTTATACTCAGAAAACCCGACTCATGAAGAGGAAAACGAGAAAGCGAGTTGAAGAGACCGCTGATGTTACATCCTATGCATCAAACCATAATCTCTTCTCTTATTATGATTGTCGGAAATCTTTGGCCGATATTGCTCTTAATGACAACTCCCGCAACCTAGATAAGAAGAATAAGAGCGCCAAGGATGAGACAGCTTTCTCTGAAGAGACACCGCCTCTCGAGTTTAGAGAAGGCGATGCGTACTTGGAACAGATACTTTTGAAAATTGAAGCAGCAAAGTCAGAAGCCCGTAACTTGAAGATCCGCGTAGACAAGGTTTTGAGTGAAAATCCAAGTATATTCCCTCTGGCTAACACAGTGAATCCACTTGGAGCTGCTGATGTATACACCAGCTCAGAACAACAAAAGCCCCTGCTGGCTATCAAAAACGAAGATGAGAAATCGATCATCTCTGAAGAAAAACCGGTGAAATCTGCTTCAGTTTCATCTCATCACGTCTCACCTGAAGACGACGAGACAACAGATATTTTACTGTCTGAGATTCTAGCATCAAAGCGAAGGGAAGGGAAATCTATTATTCCCGATAAGAATCTAGTGAAGACAGAACAAGCTTCAATTGAGGAAGGTCCATCAAGACCTGTAAGGAAAAGAACACCGCGCAATCGTGAAATCATTACGAAGGAAGAGAGTAACCCAAAGAGGCGTCGGGTTTCAAGAGAGAAGCCAAAGTCTAATGCTGTGATGGCTTCTAGGTTTTCCAACAGGAAGAGAAAGCGAGGAAAACGAAGGTCAGGCTCTGCCGGGTTACGAAGAAGATCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

471

Amino Acids

53.92

Weight (kDa)

5.61

Isoelectric Point (pI)

61.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 903, 978
AccII CGCG 2 cut(s) 900, 1252
AciI CCGC 5 cut(s) 651, 745, 806, 898, 1250
AclWI GGATC 3 cut(s) 147, 889, 1404
AcoI YGGCCR 1 cut(s) 717
AcuI CTGAAG 5 cut(s) 458, 816, 1056, 1068, 1119
AcyI GRCGYC 1 cut(s) 1297
AfaI GTAC 4 cut(s) 82, 420, 494, 836
AfiI CCNNNNNNNGG 1 cut(s) 152
AgeI ACCGGT 1 cut(s) 1057
AhlI ACTAGT 1 cut(s) 83
AjiI CACGTC 1 cut(s) 1090
AluBI AGCT 5 cut(s) 394, 788, 968, 987, 1205
AluI AGCT 5 cut(s) 394, 788, 968, 987, 1205
Alw26I GTCTC 7 cut(s) 262, 353, 641, 776, 794, 1096, 1103
AlwI GGATC 3 cut(s) 147, 889, 1404
AlwNI CAGNNNCTG 1 cut(s) 1391
Ama87I CYCGRG 1 cut(s) 812
AoxI GGCC 1 cut(s) 717
ApeKI GCWGC 2 cut(s) 866, 968
AsiGI ACCGGT 1 cut(s) 1057
Asp700I GAANNNNTTC 1 cut(s) 310
AspLEI GCGC 2 cut(s) 773, 1254
AspS9I GGNCC 2 cut(s) 97, 1220
AsuC2I CCSGG 1 cut(s) 1396
AsuHPI GGTGA 5 cut(s) 19, 167, 391, 1072, 1086
AvaI CYCGRG 1 cut(s) 812
AvaII GGWCC 2 cut(s) 97, 1220
BarI GAAGNNNNNNTAC 2 cut(s) 346, 378
BbsI GAAGAC 2 cut(s) 1107, 1199
BbvI GCAGC 2 cut(s) 878, 955
BccI CCATC 4 cut(s) 266, 275, 1231, 1330
BclI TGATCA 2 cut(s) 328, 400
BcnI CCSGG 1 cut(s) 1396
BcoDI GTCTC 7 cut(s) 262, 353, 641, 776, 794, 1096, 1103
BcuI ACTAGT 1 cut(s) 83
BfaI CTAG 5 cut(s) 84, 752, 1139, 1187, 1344
BfoI RGCGCY 1 cut(s) 774
BisI GCNGC 2 cut(s) 867, 969
BlsI GCNGC 2 cut(s) 868, 970
Bme1390I CCNGG 1 cut(s) 1396
Bme18I GGWCC 2 cut(s) 97, 1220
BmeT110I CYCGRG 1 cut(s) 812
BmgBI CACGTC 1 cut(s) 1090
BmgT120I GGNCC 2 cut(s) 97, 1220
BmrFI CCNGG 1 cut(s) 1396
BmsI GCATC 5 cut(s) 157, 163, 680, 820, 1151
BpiI GAAGAC 2 cut(s) 1107, 1199
BpuMI CCSGG 1 cut(s) 1396
Bsa29I ATCGAT 1 cut(s) 1037
BsaBI GATNNNNATC 1 cut(s) 1182
BsaHI GRCGYC 1 cut(s) 1297
BsaI GGTCTC 1 cut(s) 641
BsaJI CCNNGG 1 cut(s) 774
BsaWI WCCGGW 1 cut(s) 1057
Bsc4I CCNNNNNNNGG 1 cut(s) 152
Bse118I RCCGGY 1 cut(s) 1057
Bse3DI GCAATG 1 cut(s) 241
Bse8I GATNNNNATC 1 cut(s) 1182
BseCI ATCGAT 1 cut(s) 1037
BseDI CCNNGG 1 cut(s) 774
BseGI GGATG 3 cut(s) 37, 662, 784
BseJI GATNNNNATC 1 cut(s) 1182
BseLI CCNNNNNNNGG 1 cut(s) 152
BseMI GCAATG 1 cut(s) 241
BseMII CTCAG 5 cut(s) 126, 273, 614, 1002, 1122
BseRI GAGGAG 2 cut(s) 424, 573
BseXI GCAGC 2 cut(s) 878, 955
Bsh1236I CGCG 2 cut(s) 900, 1252
BshFI GGCC 1 cut(s) 719
BshTI ACCGGT 1 cut(s) 1057
BshVI ATCGAT 1 cut(s) 1037
BsiHKCI CYCGRG 1 cut(s) 812
BsiSI CCGG 2 cut(s) 1058, 1395
BslFI GGGAC 1 cut(s) 289
BslI CCNNNNNNNGG 1 cut(s) 152
BsmAI GTCTC 7 cut(s) 262, 353, 641, 776, 794, 1096, 1103
BsmBI CGTCTC 1 cut(s) 1096
BsmFI GGGAC 1 cut(s) 289
BsmI GAATGC 1 cut(s) 236
BsnI GGCC 1 cut(s) 719
Bso31I GGTCTC 1 cut(s) 641
BsoBI CYCGRG 1 cut(s) 812
Bsp1407I TGTACA 1 cut(s) 418
Bsp143I GATC 6 cut(s) 139, 328, 400, 894, 1038, 1409
BspACI CCGC 5 cut(s) 651, 745, 806, 898, 1250
BspANI GGCC 1 cut(s) 719
BspCNI CTCAG 5 cut(s) 127, 272, 613, 1001, 1123
BspDI ATCGAT 1 cut(s) 1037
BspFNI CGCG 2 cut(s) 900, 1252
BspHI TCATGA 1 cut(s) 615
BspPI GGATC 3 cut(s) 147, 889, 1404
BspTNI GGTCTC 1 cut(s) 641
BsrDI GCAATG 1 cut(s) 241
BsrFI RCCGGY 1 cut(s) 1057
BsrGI TGTACA 1 cut(s) 418
BssAI RCCGGY 1 cut(s) 1057
BssECI CCNNGG 1 cut(s) 774
BssMI GATC 6 cut(s) 139, 328, 400, 894, 1038, 1409
BssNAI GTATAC 1 cut(s) 979
BssNI GRCGYC 1 cut(s) 1297
BssT1I CCWWGG 1 cut(s) 774
Bst1107I GTATAC 1 cut(s) 979
Bst4CI ACNGT 2 cut(s) 952, 1128
Bst6I CTCTTC 7 cut(s) 591, 614, 639, 692, 792, 1272, 1355
BstACI GRCGYC 1 cut(s) 1297
BstAUI TGTACA 1 cut(s) 418
BstC8I GCNNGC 1 cut(s) 1011
BstDEI CTNAG 5 cut(s) 135, 259, 600, 988, 1131
BstF5I GGATG 3 cut(s) 37, 662, 784
BstFNI CGCG 2 cut(s) 900, 1252
BstH2I RGCGCY 1 cut(s) 774
BstHHI GCGC 2 cut(s) 773, 1254
BstKTI GATC 6 cut(s) 142, 331, 403, 897, 1041, 1412
BstMAI GTCTC 7 cut(s) 262, 353, 641, 776, 794, 1096, 1103
BstMBI GATC 6 cut(s) 139, 328, 400, 894, 1038, 1409
BstMWI GCNNNNNNNGC 2 cut(s) 725, 1337
BstSCI CCNGG 1 cut(s) 1394
BstUI CGCG 2 cut(s) 900, 1252
BstV1I GCAGC 2 cut(s) 878, 955
BstV2I GAAGAC 2 cut(s) 1107, 1199
BstX2I RGATCY 3 cut(s) 139, 894, 1409
BstXI CCANNNNNNTGG 1 cut(s) 532
BstYI RGATCY 3 cut(s) 139, 894, 1409
BstZ17I GTATAC 1 cut(s) 979
Bsu15I ATCGAT 1 cut(s) 1037
BsuRI GGCC 1 cut(s) 719
BsuTUI ATCGAT 1 cut(s) 1037
BtgZI GCGATG 1 cut(s) 843
BtrI CACGTC 1 cut(s) 1090
BtsCI GGATG 3 cut(s) 37, 662, 784
BtsIMutI CAGTG 2 cut(s) 132, 957
Cac8I GCNNGC 1 cut(s) 1011
CaiI CAGNNNCTG 1 cut(s) 1391
CciI TCATGA 1 cut(s) 615
CfoI GCGC 2 cut(s) 773, 1254
Cfr10I RCCGGY 1 cut(s) 1057
Cfr13I GGNCC 2 cut(s) 97, 1220
ClaI ATCGAT 1 cut(s) 1037
CseI GACGC 1 cut(s) 1286
Csp6I GTAC 4 cut(s) 81, 419, 493, 835
CspAI ACCGGT 1 cut(s) 1057
CviAII CATG 5 cut(s) 116, 320, 346, 591, 616
CviQI GTAC 4 cut(s) 81, 419, 493, 835
DdeI CTNAG 5 cut(s) 135, 259, 600, 988, 1131
DpnI GATC 6 cut(s) 141, 330, 402, 896, 1040, 1411
DpnII GATC 6 cut(s) 139, 328, 400, 894, 1038, 1409
EaeI YGGCCR 1 cut(s) 717
Eam1104I CTCTTC 7 cut(s) 591, 614, 639, 692, 792, 1272, 1355
EarI CTCTTC 7 cut(s) 591, 614, 639, 692, 792, 1272, 1355
Eco130I CCWWGG 1 cut(s) 774
Eco31I GGTCTC 1 cut(s) 641
Eco47I GGWCC 2 cut(s) 97, 1220
Eco57I CTGAAG 5 cut(s) 458, 816, 1056, 1068, 1119
Eco88I CYCGRG 1 cut(s) 812
EcoT14I CCWWGG 1 cut(s) 774
EcoT22I ATGCAT 1 cut(s) 673
ErhI CCWWGG 1 cut(s) 774
Esp3I CGTCTC 1 cut(s) 1096
FaeI CATG 5 cut(s) 119, 323, 349, 594, 619
FaqI GGGAC 1 cut(s) 289
FatI CATG 5 cut(s) 115, 319, 345, 590, 615
FauI CCCGC 1 cut(s) 752
FbaI TGATCA 2 cut(s) 328, 400
FblI GTMKAC 2 cut(s) 903, 978
Fnu4HI GCNGC 2 cut(s) 867, 969
FokI GGATG 3 cut(s) 44, 649, 791
Fsp4HI GCNGC 2 cut(s) 867, 969
FspBI CTAG 5 cut(s) 84, 752, 1139, 1187, 1344
GlaI GCGC 2 cut(s) 772, 1253
GluI GCNGC 2 cut(s) 867, 969
HaeII RGCGCY 1 cut(s) 774
HaeIII GGCC 1 cut(s) 719
HapII CCGG 2 cut(s) 1058, 1395
HgaI GACGC 1 cut(s) 1286
HhaI GCGC 2 cut(s) 773, 1254
Hin1I GRCGYC 1 cut(s) 1297
Hin1II CATG 5 cut(s) 119, 323, 349, 594, 619
Hin6I GCGC 2 cut(s) 771, 1252
HinP1I GCGC 2 cut(s) 771, 1252
HincII GTYRAC 1 cut(s) 340
HindII GTYRAC 1 cut(s) 340
HindIII AAGCTT 1 cut(s) 1203
HinfI GANTC 9 cut(s) 14, 35, 250, 311, 341, 612, 955, 1135, 1183
HpaII CCGG 2 cut(s) 1058, 1395
HphI GGTGA 5 cut(s) 19, 167, 391, 1072, 1086
Hpy166II GTNNAC 3 cut(s) 340, 904, 979
Hpy188III TCNNGA 8 cut(s) 332, 616, 812, 1175, 1227, 1259, 1308, 1413
Hpy8I GTNNAC 3 cut(s) 340, 904, 979
Hpy99I CGWCG 3 cut(s) 209, 1109, 1302
HpyAV CCTTC 7 cut(s) 4, 818, 1146, 1151, 1211, 1267, 1374
HpyCH4III ACNGT 2 cut(s) 952, 1128
HpyCH4IV ACGT 1 cut(s) 1089
HpyCH4V TGCA 4 cut(s) 197, 234, 444, 671
HpyF10VI GCNNNNNNNGC 2 cut(s) 725, 1337
HpyF3I CTNAG 5 cut(s) 135, 259, 600, 988, 1131
HpySE526I ACGT 1 cut(s) 1089
Hsp92I GRCGYC 1 cut(s) 1297
Hsp92II CATG 5 cut(s) 119, 323, 349, 594, 619
HspAI GCGC 2 cut(s) 771, 1252
Ksp22I TGATCA 2 cut(s) 328, 400
Kzo9I GATC 6 cut(s) 139, 328, 400, 894, 1038, 1409
LmnI GCTCC 1 cut(s) 965
Lsp1109I GCAGC 2 cut(s) 878, 955
LweI GCATC 5 cut(s) 157, 163, 680, 820, 1151
MaeI CTAG 5 cut(s) 84, 752, 1139, 1187, 1344
MaeII ACGT 1 cut(s) 1089
MaeIII GTNAC 6 cut(s) 86, 130, 658, 884, 1283, 1398
MalI GATC 6 cut(s) 141, 330, 402, 896, 1040, 1411
MboI GATC 6 cut(s) 139, 328, 400, 894, 1038, 1409
MfeI CAATTG 1 cut(s) 1209
MflI RGATCY 3 cut(s) 139, 894, 1409
MluCI AATT 3 cut(s) 59, 858, 1209
MlyI GAGTC 2 cut(s) 335, 606
MmeI TCCRAC 3 cut(s) 513, 686, 1377
Mph1103I ATGCAT 1 cut(s) 673
MroXI GAANNNNTTC 1 cut(s) 310
MseI TTAA 3 cut(s) 183, 431, 732
MslI CAYNNNNRTG 2 cut(s) 114, 324
MspA1I CMGCKG 1 cut(s) 653
MspI CCGG 2 cut(s) 1058, 1395
MspR9I CCNGG 1 cut(s) 1396
MunI CAATTG 1 cut(s) 1209
Mva1269I GAATGC 1 cut(s) 236
MvnI CGCG 2 cut(s) 900, 1252
MwoI GCNNNNNNNGC 2 cut(s) 725, 1337
NciI CCSGG 1 cut(s) 1396
NdeII GATC 6 cut(s) 139, 328, 400, 894, 1038, 1409
NlaIII CATG 5 cut(s) 119, 323, 349, 594, 619
NmuCI GTSAC 1 cut(s) 130
NsiI ATGCAT 1 cut(s) 673
PaeR7I CTCGAG 1 cut(s) 812
PagI TCATGA 1 cut(s) 615
PcsI WCGNNNNNNNCGW 1 cut(s) 210
PctI GAATGC 1 cut(s) 236
PdmI GAANNNNTTC 1 cut(s) 310
PfeI GAWTC 7 cut(s) 14, 35, 250, 311, 955, 1135, 1183
PinAI ACCGGT 1 cut(s) 1057
PkrI GCNGC 2 cut(s) 868, 970
PleI GAGTC 2 cut(s) 335, 606
PpsI GAGTC 2 cut(s) 335, 606
PspPI GGNCC 2 cut(s) 97, 1220
PstNI CAGNNNCTG 1 cut(s) 1391
PsuI RGATCY 3 cut(s) 139, 894, 1409
RsaI GTAC 4 cut(s) 82, 420, 494, 836
RsaNI GTAC 4 cut(s) 81, 419, 493, 835
RseI CAYNNNNRTG 2 cut(s) 114, 324
SaqAI TTAA 3 cut(s) 183, 431, 732
SatI GCNGC 2 cut(s) 867, 969
Sau3AI GATC 6 cut(s) 139, 328, 400, 894, 1038, 1409
Sau96I GGNCC 2 cut(s) 97, 1220
SchI GAGTC 2 cut(s) 335, 606
ScrFI CCNGG 1 cut(s) 1396
SfaNI GCATC 5 cut(s) 157, 163, 680, 820, 1151
Sfr274I CTCGAG 1 cut(s) 812
SinI GGWCC 2 cut(s) 97, 1220
SlaI CTCGAG 1 cut(s) 812
SmiMI CAYNNNNRTG 2 cut(s) 114, 324
SmlI CTYRAG 1 cut(s) 812
SmoI CTYRAG 1 cut(s) 812
SpeI ACTAGT 1 cut(s) 83
Sse9I AATT 3 cut(s) 59, 858, 1209
SsiI CCGC 5 cut(s) 651, 745, 806, 898, 1250
SspI AATATT 1 cut(s) 515
SspMI CTAG 5 cut(s) 84, 752, 1139, 1187, 1344
StyD4I CCNGG 1 cut(s) 1394
StyI CCWWGG 1 cut(s) 774
TaaI ACNGT 2 cut(s) 952, 1128
TaiI ACGT 1 cut(s) 1092
TaqI TCGA 5 cut(s) 17, 204, 290, 813, 1037
TasI AATT 3 cut(s) 59, 858, 1209
TatI WGTACW 2 cut(s) 80, 418
TfiI GAWTC 7 cut(s) 14, 35, 250, 311, 955, 1135, 1183
Tru1I TTAA 3 cut(s) 183, 431, 732
Tru9I TTAA 3 cut(s) 183, 431, 732
TscAI CASTG 2 cut(s) 139, 957
TseFI GTSAC 1 cut(s) 130
TseI GCWGC 2 cut(s) 866, 968
Tsp45I GTSAC 1 cut(s) 130
TspDTI ATGAA 3 cut(s) 98, 632, 1068
TspGWI ACGGA 1 cut(s) 323
TspRI CASTG 2 cut(s) 139, 957
VpaK11BI GGWCC 2 cut(s) 97, 1220
XhoI CTCGAG 1 cut(s) 812
XmiI GTMKAC 2 cut(s) 903, 978
XmnI GAANNNNTTC 1 cut(s) 310
XspI CTAG 5 cut(s) 84, 752, 1139, 1187, 1344
Zsp2I ATGCAT 1 cut(s) 673
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.