Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0006015

Physical Location & Seq

Genomic Coordinates Reverse (-)

25879773 .. 25881241

Gene Structure 1469 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0187200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1026 bp

ATGGCAGTTAATTGTGCTACTTCCAATTCCCAATATGATCGGCTCAAAGAAGTAAAAGAGTTTGACGAATCAAAGATGGGAGTAAAGGCACGTACCAACACTACCTCCATCCCCCTACTCGACTTAGCCAACCTCAATTCCCCCACCCATCGTCCCCAAATCATCCAACAGATTAAAGATGCCGCCGCCACGTGGGGTTTCTTCCAAGTCATCAACCACGGTATACCAGCATCAGTCCTCGATGAGACGATCCGAAGCATCACAGCCTTCCATGAACAACCTCACGAGATCAAAGCCAAACACTACAGACGCCAAGAGCGCCACGGTGTCATGTACACTAGCAACAATGACTTGTACCGGAGTAAAGCGGCCTCGTGGCATGACTCCCTTCAGGTGTATACAGCACCGGAGGAGATGAAGGTGGAGGATGACATCCCAGAGGTTTGCCGTAAGGAGGTGATTGCATGGGATTTTCATGCAGTCAAAGTAGCCGAGGCATTATTTGAGTTGTTGGCTGAAGGTCTTGGTTTGGAAGCTGGGAAGTTCAAGGAGTTGGGTTTTATGAAAGCTAGATTATTTTTGGGTCACTGTTATCCCTACTGTCCGCAACCAGATCTGACGGTGGGAATCAAATCTCATACTGATGCCGGTTTGACGGTGTTGCTGCAGAACCAGGTCGGAGGGTTGCAAGTGAAGCGAGGGAGTGAGTGGGTGGATGTTAAGCCCTTGCCTGGGGCATTGACTGTTAATATTGGTGACTTCATACAGATCATATCAAATGGGGAGTATCAAAGCGTGGAGCATCGAGTATTGGCAAACTCATCGAAGGAACCAAGAATCTCAGTATTGATTTTTAATAACTTGGGGGGTTGGAAAGAGTCGGAAGAATTTGGGCCACTTCCAGAATTATTATCAGCAGAGAAACCAGCCCTTTATCGAGGATTCACTGTGCCAGAGTTCCTTCAAAGCTTTTTTAGCAAAGAATTAGATGGCAAAAACATAGTAGAAAGAGTTACACCTCACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

341

Amino Acids

38.32

Weight (kDa)

5.97

Isoelectric Point (pI)

36.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	37 - 139	6.1e-21	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	196 - 285	5.2e-28	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006015)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G37440 AT4G37440 AT4G37440
fragaria_vesca	FvH4_7g09930 FvH4_7g09930 FvH4_7g09930 FvH4_7g09930
malus_domestica	MD07G1104500.v1.1
prunus_persica	Prupe.2G128100_v2.0.a1 Prupe.2G128100_v2.0.a1 Prupe.2G128100_v2.0.a1 Prupe.2G128100_v2.0.a1
pyrus_communis	pycom07g08950
rosa_chinensis	RchiOBHm_Chr1g0347491 RchiOBHm_Chr1g0347521
rosa_laevigata	RLG00000028746
rosa_multiflora	Rmu_ssc0000280.1_g000003
rosa_roxburghii	Rroxscaffold_4G00307760
rosa_rugosa	Rorug01G0187100 Rorug01G0187200 Rorug01G0187300
rosa_samantha	Rh1AG204500 Rh1BG170300 Rh1CG189600 Rh1DG200600
rosa_wichuraiana	Rw0G013610 Rw1G017160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	223, 398
AciI	CCGC	4 cut(s)	183, 186, 368, 605
AclWI	GGATC	1 cut(s)	244
AcsI	RAATTY	1 cut(s)	887
AcuI	CTGAAG	2 cut(s)	374, 537
AcvI	CACGTG	1 cut(s)	192
AcyI	GRCGYC	1 cut(s)	310
AfaI	GTAC	3 cut(s)	94, 335, 356
AfiI	CCNNNNNNNGG	4 cut(s)	192, 454, 731, 732
AgsI	TTSAA	2 cut(s)	547, 965
AjnI	CCWGG	2 cut(s)	672, 730
AluBI	AGCT	3 cut(s)	536, 569, 969
AluI	AGCT	3 cut(s)	536, 569, 969
Alw26I	GTCTC	1 cut(s)	239
AlwI	GGATC	1 cut(s)	244
AoxI	GGCC	2 cut(s)	369, 893
ApeKI	GCWGC	1 cut(s)	664
ApoI	RAATTY	1 cut(s)	887
AspLEI	GCGC	1 cut(s)	321
AspS9I	GGNCC	1 cut(s)	893
AsuHPI	GGTGA	2 cut(s)	469, 767
BauI	CACGAG	2 cut(s)	284, 373
BbrPI	CACGTG	1 cut(s)	192
BbvI	GCAGC	1 cut(s)	651
BccI	CCATC	4 cut(s)	70, 116, 156, 983
BceAI	ACGGC	1 cut(s)	432
BcgI	CGANNNNNNTGC	2 cut(s)	804, 838
BciT130I	CCWGG	2 cut(s)	674, 732
BcoDI	GTCTC	1 cut(s)	239
BfaI	CTAG	2 cut(s)	339, 570
BfmI	CTRYAG	2 cut(s)	304, 665
BfoI	RGCGCY	1 cut(s)	322
BglII	AGATCT	1 cut(s)	613
BisI	GCNGC	4 cut(s)	183, 186, 369, 665
BlsI	GCNGC	4 cut(s)	184, 187, 370, 666
Bme1390I	CCNGG	2 cut(s)	674, 732
BmgT120I	GGNCC	1 cut(s)	893
BmiI	GGNNCC	1 cut(s)	831
BmrFI	CCNGG	2 cut(s)	674, 732
BmsI	GCATC	5 cut(s)	169, 239, 267, 634, 811
BsaAI	YACGTR	2 cut(s)	92, 192
BsaHI	GRCGYC	1 cut(s)	310
BsaJI	CCNNGG	4 cut(s)	217, 322, 492, 731
BsaWI	WCCGGW	2 cut(s)	357, 406
BsaXI	ACNNNNNCTCC	2 cut(s)	89, 119
Bsc4I	CCNNNNNNNGG	4 cut(s)	192, 454, 731, 732
Bse118I	RCCGGY	1 cut(s)	647
BseBI	CCWGG	2 cut(s)	674, 732
BseDI	CCNNGG	4 cut(s)	217, 322, 492, 731
BseGI	GGATG	5 cut(s)	108, 162, 432, 433, 721
BseLI	CCNNNNNNNGG	4 cut(s)	192, 454, 731, 732
BseMII	CTCAG	1 cut(s)	855
BseRI	GAGGAG	1 cut(s)	425
BseXI	GCAGC	1 cut(s)	651
BseYI	CCCAGC	1 cut(s)	536
BshFI	GGCC	2 cut(s)	371, 895
BsiSI	CCGG	3 cut(s)	358, 407, 648
BslFI	GGGAC	1 cut(s)	138
BslI	CCNNNNNNNGG	4 cut(s)	192, 454, 731, 732
BsmAI	GTCTC	1 cut(s)	239
BsmBI	CGTCTC	1 cut(s)	239
BsmFI	GGGAC	1 cut(s)	138
BsnI	GGCC	2 cut(s)	371, 895
Bsp1407I	TGTACA	1 cut(s)	333
Bsp143I	GATC	5 cut(s)	37, 249, 288, 613, 768
BspACI	CCGC	4 cut(s)	183, 186, 368, 605
BspANI	GGCC	2 cut(s)	371, 895
BspCNI	CTCAG	1 cut(s)	854
BspLI	GGNNCC	1 cut(s)	831
BspMAI	CTGCAG	1 cut(s)	669
BspPI	GGATC	1 cut(s)	244
BsrFI	RCCGGY	1 cut(s)	647
BsrGI	TGTACA	1 cut(s)	333
BssAI	RCCGGY	1 cut(s)	647
BssECI	CCNNGG	4 cut(s)	217, 322, 492, 731
BssMI	GATC	5 cut(s)	37, 249, 288, 613, 768
BssNAI	GTATAC	2 cut(s)	224, 399
BssNI	GRCGYC	1 cut(s)	310
BssSI	CACGAG	2 cut(s)	284, 373
Bst1107I	GTATAC	2 cut(s)	224, 399
Bst2BI	CACGAG	2 cut(s)	284, 373
Bst2UI	CCWGG	2 cut(s)	674, 732
Bst4CI	ACNGT	8 cut(s)	221, 326, 590, 602, 622, 658, 745, 949
BstACI	GRCGYC	1 cut(s)	310
BstAUI	TGTACA	1 cut(s)	333
BstBAI	YACGTR	2 cut(s)	92, 192
BstDEI	CTNAG	2 cut(s)	124, 841
BstDSI	CCRYGG	2 cut(s)	217, 322
BstF5I	GGATG	5 cut(s)	108, 162, 432, 433, 721
BstH2I	RGCGCY	1 cut(s)	322
BstHHI	GCGC	1 cut(s)	321
BstKTI	GATC	5 cut(s)	40, 252, 291, 616, 771
BstMAI	GTCTC	1 cut(s)	239
BstMBI	GATC	5 cut(s)	37, 249, 288, 613, 768
BstMWI	GCNNNNNNNGC	3 cut(s)	318, 694, 975
BstNI	CCWGG	2 cut(s)	674, 732
BstSCI	CCNGG	2 cut(s)	672, 730
BstSFI	CTRYAG	2 cut(s)	304, 665
BstV1I	GCAGC	1 cut(s)	651
BstX2I	RGATCY	1 cut(s)	613
BstYI	RGATCY	1 cut(s)	613
BstZ17I	GTATAC	2 cut(s)	224, 399
BsuRI	GGCC	2 cut(s)	371, 895
BtgI	CCRYGG	2 cut(s)	217, 322
BtsCI	GGATG	5 cut(s)	108, 162, 432, 433, 721
BtsIMutI	CAGTG	2 cut(s)	586, 945
CfoI	GCGC	1 cut(s)	321
Cfr10I	RCCGGY	1 cut(s)	647
Cfr13I	GGNCC	1 cut(s)	893
CseI	GACGC	1 cut(s)	318
CsiI	ACCWGGT	1 cut(s)	672
Csp6I	GTAC	3 cut(s)	93, 334, 355
CviAII	CATG	5 cut(s)	272, 331, 380, 465, 476
CviQI	GTAC	3 cut(s)	93, 334, 355
DdeI	CTNAG	2 cut(s)	124, 841
DpnI	GATC	5 cut(s)	39, 251, 290, 615, 770
DpnII	GATC	5 cut(s)	37, 249, 288, 613, 768
Eco57I	CTGAAG	2 cut(s)	374, 537
Eco72I	CACGTG	1 cut(s)	192
EcoRII	CCWGG	2 cut(s)	672, 730
Esp3I	CGTCTC	1 cut(s)	239
FaeI	CATG	5 cut(s)	275, 334, 383, 468, 479
FaqI	GGGAC	1 cut(s)	138
FatI	CATG	5 cut(s)	271, 330, 379, 464, 475
FblI	GTMKAC	2 cut(s)	223, 398
Fnu4HI	GCNGC	4 cut(s)	183, 186, 369, 665
FokI	GGATG	5 cut(s)	95, 149, 419, 440, 728
Fsp4HI	GCNGC	4 cut(s)	183, 186, 369, 665
FspBI	CTAG	2 cut(s)	339, 570
GlaI	GCGC	1 cut(s)	320
GluI	GCNGC	4 cut(s)	183, 186, 369, 665
GsaI	CCCAGC	1 cut(s)	540
HaeII	RGCGCY	1 cut(s)	322
HaeIII	GGCC	2 cut(s)	371, 895
HapII	CCGG	3 cut(s)	358, 407, 648
HgaI	GACGC	1 cut(s)	318
HhaI	GCGC	1 cut(s)	321
Hin1I	GRCGYC	1 cut(s)	310
Hin1II	CATG	5 cut(s)	275, 334, 383, 468, 479
Hin6I	GCGC	1 cut(s)	319
HinP1I	GCGC	1 cut(s)	319
HindIII	AAGCTT	1 cut(s)	967
HinfI	GANTC	6 cut(s)	68, 383, 627, 837, 878, 942
HpaII	CCGG	3 cut(s)	358, 407, 648
HphI	GGTGA	2 cut(s)	469, 767
Hpy166II	GTNNAC	3 cut(s)	224, 336, 399
Hpy188I	TCNGA	4 cut(s)	254, 618, 680, 883
Hpy188III	TCNNGA	2 cut(s)	284, 902
Hpy8I	GTNNAC	3 cut(s)	224, 336, 399
HpyAV	CCTTC	6 cut(s)	277, 398, 412, 512, 820, 971
HpyCH4III	ACNGT	8 cut(s)	221, 326, 590, 602, 622, 658, 745, 949
HpyCH4IV	ACGT	2 cut(s)	91, 191
HpyCH4V	TGCA	4 cut(s)	464, 479, 667, 688
HpyF10VI	GCNNNNNNNGC	3 cut(s)	318, 694, 975
HpyF3I	CTNAG	2 cut(s)	124, 841
HpySE526I	ACGT	2 cut(s)	91, 191
Hsp92I	GRCGYC	1 cut(s)	310
Hsp92II	CATG	5 cut(s)	275, 334, 383, 468, 479
HspAI	GCGC	1 cut(s)	319
Kzo9I	GATC	5 cut(s)	37, 249, 288, 613, 768
LmnI	GCTCC	1 cut(s)	799
Lsp1109I	GCAGC	1 cut(s)	651
LweI	GCATC	5 cut(s)	169, 239, 267, 634, 811
MabI	ACCWGGT	1 cut(s)	672
MaeI	CTAG	2 cut(s)	339, 570
MaeII	ACGT	2 cut(s)	91, 191
MaeIII	GTNAC	3 cut(s)	584, 755, 1012
MalI	GATC	5 cut(s)	39, 251, 290, 615, 770
MboI	GATC	5 cut(s)	37, 249, 288, 613, 768
MboII	GAAGA	2 cut(s)	193, 896
MflI	RGATCY	1 cut(s)	613
MluCI	AATT	6 cut(s)	10, 25, 136, 887, 905, 983
MlyI	GAGTC	2 cut(s)	377, 887
MmeI	TCCRAC	4 cut(s)	190, 658, 851, 861
MseI	TTAA	5 cut(s)	9, 174, 720, 747, 855
MslI	CAYNNNNRTG	1 cut(s)	642
MspI	CCGG	3 cut(s)	358, 407, 648
MspR9I	CCNGG	2 cut(s)	674, 732
MvaI	CCWGG	2 cut(s)	674, 732
MwoI	GCNNNNNNNGC	3 cut(s)	318, 694, 975
NdeII	GATC	5 cut(s)	37, 249, 288, 613, 768
NlaIII	CATG	5 cut(s)	275, 334, 383, 468, 479
NlaIV	GGNNCC	1 cut(s)	831
NmeAIII	GCCGAG	1 cut(s)	517
NmuCI	GTSAC	2 cut(s)	584, 755
PfeI	GAWTC	4 cut(s)	68, 627, 837, 942
PkrI	GCNGC	4 cut(s)	184, 187, 370, 666
PleI	GAGTC	2 cut(s)	377, 886
PmaCI	CACGTG	1 cut(s)	192
PmlI	CACGTG	1 cut(s)	192
PpsI	GAGTC	2 cut(s)	377, 886
Ppu21I	YACGTR	2 cut(s)	92, 192
Psp6I	CCWGG	2 cut(s)	672, 730
PspCI	CACGTG	1 cut(s)	192
PspFI	CCCAGC	1 cut(s)	536
PspGI	CCWGG	2 cut(s)	672, 730
PspN4I	GGNNCC	1 cut(s)	831
PspPI	GGNCC	1 cut(s)	893
PstI	CTGCAG	1 cut(s)	669
PsuI	RGATCY	1 cut(s)	613
RsaI	GTAC	3 cut(s)	94, 335, 356
RsaNI	GTAC	3 cut(s)	93, 334, 355
RseI	CAYNNNNRTG	1 cut(s)	642
SaqAI	TTAA	5 cut(s)	9, 174, 720, 747, 855
SatI	GCNGC	4 cut(s)	183, 186, 369, 665
Sau3AI	GATC	5 cut(s)	37, 249, 288, 613, 768
Sau96I	GGNCC	1 cut(s)	893
SchI	GAGTC	2 cut(s)	377, 887
ScrFI	CCNGG	2 cut(s)	674, 732
SexAI	ACCWGGT	1 cut(s)	672
SfaNI	GCATC	5 cut(s)	169, 239, 267, 634, 811
SfcI	CTRYAG	2 cut(s)	304, 665
SmiMI	CAYNNNNRTG	1 cut(s)	642
Sse9I	AATT	6 cut(s)	10, 25, 136, 887, 905, 983
SsiI	CCGC	4 cut(s)	183, 186, 368, 605
SspI	AATATT	1 cut(s)	751
SspMI	CTAG	2 cut(s)	339, 570
StyD4I	CCNGG	2 cut(s)	672, 730
TaaI	ACNGT	8 cut(s)	221, 326, 590, 602, 622, 658, 745, 949
TaiI	ACGT	2 cut(s)	94, 194
TaqI	TCGA	5 cut(s)	120, 240, 805, 824, 937
TasI	AATT	6 cut(s)	10, 25, 136, 887, 905, 983
TatI	WGTACW	1 cut(s)	333
TauI	GCSGC	3 cut(s)	185, 188, 371
TfiI	GAWTC	4 cut(s)	68, 627, 837, 942
Tru1I	TTAA	5 cut(s)	9, 174, 720, 747, 855
Tru9I	TTAA	5 cut(s)	9, 174, 720, 747, 855
TscAI	CASTG	2 cut(s)	593, 952
TseFI	GTSAC	2 cut(s)	584, 755
TseI	GCWGC	1 cut(s)	664
Tsp45I	GTSAC	2 cut(s)	584, 755
TspDTI	ATGAA	5 cut(s)	288, 431, 464, 578, 751
TspRI	CASTG	2 cut(s)	593, 952
XapI	RAATTY	1 cut(s)	887
XmiI	GTMKAC	2 cut(s)	223, 398
XspI	CTAG	2 cut(s)	339, 570

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.