Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0006015

Physical Location & Seq

Genomic Coordinates Reverse (-)

27369863 .. 27375383

Gene Structure 5521 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000028746

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1170 bp

ATGGGCCCTGAATTGGAGCTGAAACCAAAGTCAGAAGCTGCAATGGAAGTTTCAGCTGTAAAGGAGACTGGTGTAATTCATATAGAACCAGAAGAGAAGATTATGCCTTGTGTGAGTAACTACAAAGATAATATTTTTAACATGGAAGCATCATTTGTGGAGCAAGCTGCTACATCAAATAGAAGTGAGAATCAGGAGATAAATATTACCGATTGTGCCAGTCCGAGTGATGTTCGGATGGTTGAAAATGGATGCCAGGACTTGACAGAGAGCTCGAGTTCTTTTGGTAATACAGTATCTGGGACAGAGAATGGTTTGATGTTGGATGGTGGTGATGAAGTTGAATCACGGTATTGTGAAAATCCATCGGTGTCATTGTATGATGGATATTCTGATGCATTTCATACAAGGAAGAAAAAGTTGACTGGTCATTGGAGGAAATTTATACGTCCTCTTATGTGGCGCTGTAAATGGCTCGAACTGCAGATTAAGGAACTTCAGTCCCAGACCCTGAAATATGATGCGGAACTTGCAGAATATGATAAACTAAAGCAGTTTGAATTTGGTGGTTACACAGCTGAAGGTTTTGATGGAAAGTCAATACCATTTTCAAGTCAAATTCAAAGAAACAAATTCATGAAAAGGAAGAAAAGAAAGAGAATTGAAGATACTACTGATCTAGTGTCATTTACGTCAAACCATAAACTGTTTTCCTATTATGAAAATAAAAAGTCTGGTGCTAATGGTGGTTCCATGGAAGAGGATTGCGGTAATTTAGCATCAGGTAAAAGTAGTCACAGCATAAATGAGTTCGAGATTGAGTTCAGAGATGGTGATAGTACCTTGGAAGATACTCTTCGGAAGATTGAAGTCGTACATTCACAAGTCTGCCGGTTGAAGACCCGAATTGACAAGGTGGTCAAGGAAAATCCCGAGTTGTTTGGCTCTGCTCAAAGTCCTGCTCTTGAAAATGTGAATGATTTACTAGCTGAAACTCTACCAAATGCATTTCACCATAGTTCTGAGTGTAACATGGGACCTTTACTTTTGCCTGGGAGTGCAGTTTCAAGTCATGAAGGGTTAACCACTCTCCCTGGTATGATTGGGAACACAGATCAGCCTTGGATTGGCACTGAGCAGGAAAATGTAAGTTTTTCTTTTATGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

390

Amino Acids

43.63

Weight (kDa)

5.11

Isoelectric Point (pI)

49.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006015)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G37440 AT4G37440 AT4G37440
fragaria_vesca	FvH4_7g09930 FvH4_7g09930 FvH4_7g09930 FvH4_7g09930
malus_domestica	MD07G1104500.v1.1
prunus_persica	Prupe.2G128100_v2.0.a1 Prupe.2G128100_v2.0.a1 Prupe.2G128100_v2.0.a1 Prupe.2G128100_v2.0.a1
pyrus_communis	pycom07g08950
rosa_chinensis	RchiOBHm_Chr1g0347491 RchiOBHm_Chr1g0347521
rosa_laevigata	RLG00000028746
rosa_multiflora	Rmu_ssc0000280.1_g000003
rosa_roxburghii	Rroxscaffold_4G00307760
rosa_rugosa	Rorug01G0187100 Rorug01G0187200 Rorug01G0187300
rosa_samantha	Rh1AG204500 Rh1BG170300 Rh1CG189600 Rh1DG200600
rosa_wichuraiana	Rw0G013610 Rw1G017160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	917
AciI	CCGC	2 cut(s)	524, 768
AcsI	RAATTY	4 cut(s)	440, 560, 618, 632
AcuI	CTGAAG	2 cut(s)	482, 600
AfaI	GTAC	2 cut(s)	841, 876
AfiI	CCNNNNNNNGG	2 cut(s)	13, 1127
AjnI	CCWGG	3 cut(s)	255, 1051, 1093
AluBI	AGCT	7 cut(s)	19, 38, 56, 167, 273, 578, 989
AluI	AGCT	7 cut(s)	19, 38, 56, 167, 273, 578, 989
Alw21I	GWGCWC	1 cut(s)	275
Alw26I	GTCTC	1 cut(s)	59
AlwNI	CAGNNNCTG	3 cut(s)	38, 299, 511
Ama87I	CYCGRG	2 cut(s)	274, 932
AoxI	GGCC	1 cut(s)	4
ApaI	GGGCCC	1 cut(s)	8
ApeKI	GCWGC	2 cut(s)	38, 167
ApoI	RAATTY	4 cut(s)	440, 560, 618, 632
AspLEI	GCGC	1 cut(s)	465
AspS9I	GGNCC	3 cut(s)	4, 5, 1037
AsuHPI	GGTGA	3 cut(s)	344, 845, 1004
AvaI	CYCGRG	2 cut(s)	274, 932
AvaII	GGWCC	1 cut(s)	1037
BaeGI	GKGCMC	1 cut(s)	8
BanII	GRGCYC	2 cut(s)	8, 275
BbsI	GAAGAC	1 cut(s)	905
Bbv12I	GWGCWC	1 cut(s)	275
BbvI	GCAGC	2 cut(s)	25, 154
BccI	CCATC	6 cut(s)	232, 320, 373, 377, 584, 824
BciT130I	CCWGG	3 cut(s)	257, 1053, 1095
BcoDI	GTCTC	1 cut(s)	59
BfaI	CTAG	2 cut(s)	680, 986
BfmI	CTRYAG	1 cut(s)	482
BfoI	RGCGCY	1 cut(s)	466
BisI	GCNGC	2 cut(s)	39, 168
BlsI	GCNGC	2 cut(s)	40, 169
Bme1390I	CCNGG	3 cut(s)	257, 1053, 1095
Bme18I	GGWCC	1 cut(s)	1037
BmeT110I	CYCGRG	2 cut(s)	274, 932
BmgT120I	GGNCC	3 cut(s)	4, 5, 1037
BmiI	GGNNCC	3 cut(s)	6, 751, 1038
BmrFI	CCNGG	3 cut(s)	257, 1053, 1095
BmsI	GCATC	5 cut(s)	158, 242, 385, 511, 788
BpiI	GAAGAC	1 cut(s)	905
BsaJI	CCNNGG	5 cut(s)	753, 843, 1052, 1093, 1121
Bsc4I	CCNNNNNNNGG	2 cut(s)	13, 1127
Bse118I	RCCGGY	1 cut(s)	891
Bse1I	ACTGG	3 cut(s)	73, 219, 430
Bse3DI	GCAATG	1 cut(s)	48
BseBI	CCWGG	3 cut(s)	257, 1053, 1095
BseDI	CCNNGG	5 cut(s)	753, 843, 1052, 1093, 1121
BseGI	GGATG	3 cut(s)	243, 257, 331
BseLI	CCNNNNNNNGG	2 cut(s)	13, 1127
BseMI	GCAATG	1 cut(s)	48
BseMII	CTCAG	2 cut(s)	1014, 1125
BseNI	ACTGG	3 cut(s)	73, 219, 430
BseSI	GKGCMC	1 cut(s)	8
BseXI	GCAGC	2 cut(s)	25, 154
BsgI	GTGCAG	1 cut(s)	1080
BshFI	GGCC	1 cut(s)	6
BsiHKAI	GWGCWC	1 cut(s)	275
BsiHKCI	CYCGRG	2 cut(s)	274, 932
BsiSI	CCGG	1 cut(s)	892
BslFI	GGGAC	3 cut(s)	316, 487, 1050
BslI	CCNNNNNNNGG	2 cut(s)	13, 1127
BsmAI	GTCTC	1 cut(s)	59
BsmFI	GGGAC	3 cut(s)	316, 487, 1050
BsnI	GGCC	1 cut(s)	6
BsoBI	CYCGRG	2 cut(s)	274, 932
Bsp120I	GGGCCC	1 cut(s)	4
Bsp1286I	GDGCHC	2 cut(s)	8, 275
Bsp143I	GATC	2 cut(s)	676, 1114
Bsp19I	CCATGG	1 cut(s)	753
BspACI	CCGC	2 cut(s)	524, 768
BspANI	GGCC	1 cut(s)	6
BspCNI	CTCAG	2 cut(s)	1015, 1126
BspHI	TCATGA	2 cut(s)	636, 1072
BspLI	GGNNCC	3 cut(s)	6, 751, 1038
BspMAI	CTGCAG	1 cut(s)	486
BsrDI	GCAATG	1 cut(s)	48
BsrFI	RCCGGY	1 cut(s)	891
BsrI	ACTGG	3 cut(s)	73, 219, 430
BssAI	RCCGGY	1 cut(s)	891
BssECI	CCNNGG	5 cut(s)	753, 843, 1052, 1093, 1121
BssMI	GATC	2 cut(s)	676, 1114
BssT1I	CCWWGG	3 cut(s)	753, 843, 1121
Bst2UI	CCWGG	3 cut(s)	257, 1053, 1095
Bst4CI	ACNGT	3 cut(s)	295, 351, 708
Bst6I	CTCTTC	3 cut(s)	87, 753, 861
BstC8I	GCNNGC	1 cut(s)	165
BstDEI	CTNAG	2 cut(s)	1023, 1134
BstDSI	CCRYGG	1 cut(s)	753
BstF5I	GGATG	3 cut(s)	243, 257, 331
BstH2I	RGCGCY	1 cut(s)	466
BstHHI	GCGC	1 cut(s)	465
BstKTI	GATC	2 cut(s)	679, 1117
BstMAI	GTCTC	1 cut(s)	59
BstMBI	GATC	2 cut(s)	676, 1114
BstMWI	GCNNNNNNNGC	2 cut(s)	481, 530
BstNI	CCWGG	3 cut(s)	257, 1053, 1095
BstSCI	CCNGG	3 cut(s)	255, 1051, 1093
BstSFI	CTRYAG	1 cut(s)	482
BstSLI	GKGCMC	1 cut(s)	8
BstV1I	GCAGC	2 cut(s)	25, 154
BstV2I	GAAGAC	1 cut(s)	905
BsuRI	GGCC	1 cut(s)	6
BtgI	CCRYGG	1 cut(s)	753
BtsCI	GGATG	3 cut(s)	243, 257, 331
BtsIMutI	CAGTG	1 cut(s)	1131
Cac8I	GCNNGC	1 cut(s)	165
CaiI	CAGNNNCTG	3 cut(s)	38, 299, 511
CciI	TCATGA	2 cut(s)	636, 1072
CfoI	GCGC	1 cut(s)	465
Cfr10I	RCCGGY	1 cut(s)	891
Cfr13I	GGNCC	3 cut(s)	4, 5, 1037
Csp6I	GTAC	2 cut(s)	840, 875
CviAII	CATG	5 cut(s)	142, 637, 754, 1033, 1073
CviQI	GTAC	2 cut(s)	840, 875
DdeI	CTNAG	2 cut(s)	1023, 1134
DpnI	GATC	2 cut(s)	678, 1116
DpnII	GATC	2 cut(s)	676, 1114
DrdI	GACNNNNNNGTC	1 cut(s)	917
DseDI	GACNNNNNNGTC	1 cut(s)	917
Eam1104I	CTCTTC	3 cut(s)	87, 753, 861
EarI	CTCTTC	3 cut(s)	87, 753, 861
Ecl136II	GAGCTC	1 cut(s)	273
Eco130I	CCWWGG	3 cut(s)	753, 843, 1121
Eco24I	GRGCYC	2 cut(s)	8, 275
Eco47I	GGWCC	1 cut(s)	1037
Eco53kI	GAGCTC	1 cut(s)	273
Eco57I	CTGAAG	2 cut(s)	482, 600
Eco88I	CYCGRG	2 cut(s)	274, 932
EcoICRI	GAGCTC	1 cut(s)	273
EcoO109I	RGGNCCY	2 cut(s)	5, 1037
EcoRII	CCWGG	3 cut(s)	255, 1051, 1093
EcoT14I	CCWWGG	3 cut(s)	753, 843, 1121
EcoT22I	ATGCAT	2 cut(s)	400, 1009
EcoT38I	GRGCYC	2 cut(s)	8, 275
ErhI	CCWWGG	3 cut(s)	753, 843, 1121
FaeI	CATG	5 cut(s)	145, 640, 757, 1036, 1076
FalI	AAGNNNNNCTT	3 cut(s)	840, 872, 1141
FaqI	GGGAC	3 cut(s)	316, 487, 1050
FatI	CATG	5 cut(s)	141, 636, 753, 1032, 1072
Fnu4HI	GCNGC	2 cut(s)	39, 168
FokI	GGATG	3 cut(s)	250, 264, 338
FriOI	GRGCYC	2 cut(s)	8, 275
Fsp4HI	GCNGC	2 cut(s)	39, 168
FspBI	CTAG	2 cut(s)	680, 986
GlaI	GCGC	1 cut(s)	464
GluI	GCNGC	2 cut(s)	39, 168
HaeII	RGCGCY	1 cut(s)	466
HaeIII	GGCC	1 cut(s)	6
HapII	CCGG	1 cut(s)	892
HhaI	GCGC	1 cut(s)	465
Hin1II	CATG	5 cut(s)	145, 640, 757, 1036, 1076
Hin6I	GCGC	1 cut(s)	463
HinP1I	GCGC	1 cut(s)	463
HincII	GTYRAC	2 cut(s)	423, 1083
HindII	GTYRAC	2 cut(s)	423, 1083
HinfI	GANTC	2 cut(s)	190, 344
HpaI	GTTAAC	1 cut(s)	1083
HpaII	CCGG	1 cut(s)	892
HphI	GGTGA	3 cut(s)	344, 845, 1004
Hpy166II	GTNNAC	2 cut(s)	423, 1083
Hpy188I	TCNGA	7 cut(s)	34, 225, 237, 394, 827, 861, 1024
Hpy188III	TCNNGA	6 cut(s)	194, 637, 814, 932, 965, 1073
Hpy8I	GTNNAC	2 cut(s)	423, 1083
HpyAV	CCTTC	2 cut(s)	575, 1070
HpyCH4III	ACNGT	3 cut(s)	295, 351, 708
HpyCH4IV	ACGT	2 cut(s)	448, 692
HpyCH4V	TGCA	6 cut(s)	41, 398, 484, 533, 1007, 1061
HpyF10VI	GCNNNNNNNGC	2 cut(s)	481, 530
HpyF3I	CTNAG	2 cut(s)	1023, 1134
HpySE526I	ACGT	2 cut(s)	448, 692
Hsp92II	CATG	5 cut(s)	145, 640, 757, 1036, 1076
HspAI	GCGC	1 cut(s)	463
KspAI	GTTAAC	1 cut(s)	1083
Kzo9I	GATC	2 cut(s)	676, 1114
LmnI	GCTCC	2 cut(s)	16, 160
Lsp1109I	GCAGC	2 cut(s)	25, 154
LweI	GCATC	5 cut(s)	158, 242, 385, 511, 788
MaeI	CTAG	2 cut(s)	680, 986
MaeII	ACGT	2 cut(s)	448, 692
MaeIII	GTNAC	4 cut(s)	116, 569, 794, 1028
MalI	GATC	2 cut(s)	678, 1116
MboI	GATC	2 cut(s)	676, 1114
MhlI	GDGCHC	2 cut(s)	8, 275
MluCI	AATT	9 cut(s)	11, 75, 440, 560, 618, 632, 660, 772, 906
MmeI	TCCRAC	1 cut(s)	303
MnlI	CCTC	3 cut(s)	429, 462, 754
Mph1103I	ATGCAT	2 cut(s)	400, 1009
MseI	TTAA	3 cut(s)	138, 489, 1082
MspA1I	CMGCKG	2 cut(s)	56, 578
MspI	CCGG	1 cut(s)	892
MspR9I	CCNGG	3 cut(s)	257, 1053, 1095
MvaI	CCWGG	3 cut(s)	257, 1053, 1095
MwoI	GCNNNNNNNGC	2 cut(s)	481, 530
NcoI	CCATGG	1 cut(s)	753
NdeII	GATC	2 cut(s)	676, 1114
NlaIII	CATG	5 cut(s)	145, 640, 757, 1036, 1076
NlaIV	GGNNCC	3 cut(s)	6, 751, 1038
NmuCI	GTSAC	1 cut(s)	794
NsiI	ATGCAT	2 cut(s)	400, 1009
PaeR7I	CTCGAG	1 cut(s)	274
PagI	TCATGA	2 cut(s)	636, 1072
PfeI	GAWTC	2 cut(s)	190, 344
PkrI	GCNGC	2 cut(s)	40, 169
PpuMI	RGGWCCY	1 cut(s)	1037
Psp124BI	GAGCTC	1 cut(s)	275
Psp5II	RGGWCCY	1 cut(s)	1037
Psp6I	CCWGG	3 cut(s)	255, 1051, 1093
PspGI	CCWGG	3 cut(s)	255, 1051, 1093
PspN4I	GGNNCC	3 cut(s)	6, 751, 1038
PspOMI	GGGCCC	1 cut(s)	4
PspPI	GGNCC	3 cut(s)	4, 5, 1037
PspPPI	RGGWCCY	1 cut(s)	1037
PspXI	VCTCGAGB	1 cut(s)	274
PstI	CTGCAG	1 cut(s)	486
PstNI	CAGNNNCTG	3 cut(s)	38, 299, 511
PvuII	CAGCTG	2 cut(s)	56, 578
RsaI	GTAC	2 cut(s)	841, 876
RsaNI	GTAC	2 cut(s)	840, 875
SacI	GAGCTC	1 cut(s)	275
SaqAI	TTAA	3 cut(s)	138, 489, 1082
SatI	GCNGC	2 cut(s)	39, 168
Sau3AI	GATC	2 cut(s)	676, 1114
Sau96I	GGNCC	3 cut(s)	4, 5, 1037
ScrFI	CCNGG	3 cut(s)	257, 1053, 1095
SduI	GDGCHC	2 cut(s)	8, 275
SfaNI	GCATC	5 cut(s)	158, 242, 385, 511, 788
SfcI	CTRYAG	1 cut(s)	482
Sfr274I	CTCGAG	1 cut(s)	274
SinI	GGWCC	1 cut(s)	1037
SlaI	CTCGAG	1 cut(s)	274
SmlI	CTYRAG	1 cut(s)	274
SmoI	CTYRAG	1 cut(s)	274
Sse9I	AATT	9 cut(s)	11, 75, 440, 560, 618, 632, 660, 772, 906
SsiI	CCGC	2 cut(s)	524, 768
SspI	AATATT	2 cut(s)	133, 205
SspMI	CTAG	2 cut(s)	680, 986
SstI	GAGCTC	1 cut(s)	275
StyD4I	CCNGG	3 cut(s)	255, 1051, 1093
StyI	CCWWGG	3 cut(s)	753, 843, 1121
TaaI	ACNGT	3 cut(s)	295, 351, 708
TaiI	ACGT	2 cut(s)	451, 695
TaqI	TCGA	3 cut(s)	275, 477, 813
TasI	AATT	9 cut(s)	11, 75, 440, 560, 618, 632, 660, 772, 906
TfiI	GAWTC	2 cut(s)	190, 344
Tru1I	TTAA	3 cut(s)	138, 489, 1082
Tru9I	TTAA	3 cut(s)	138, 489, 1082
TscAI	CASTG	1 cut(s)	1138
TseFI	GTSAC	1 cut(s)	794
TseI	GCWGC	2 cut(s)	38, 167
Tsp45I	GTSAC	1 cut(s)	794
TspDTI	ATGAA	7 cut(s)	68, 351, 392, 625, 653, 735, 1089
TspRI	CASTG	1 cut(s)	1138
VpaK11BI	GGWCC	1 cut(s)	1037
XapI	RAATTY	4 cut(s)	440, 560, 618, 632
XhoI	CTCGAG	1 cut(s)	274
XspI	CTAG	2 cut(s)	680, 986
Zsp2I	ATGCAT	2 cut(s)	400, 1009

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.