Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0006015

Physical Location & Seq

Genomic Coordinates Forward (+)

11843459 .. 11848250

Gene Structure 4792 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1104500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1296 bp

ATGGAACTGCCAGTTGCTAAGGATGGAAGTATCAACCGAGACCTAGAAGATAAACTTATGCCTTGTATCGTTGAAAGTGAATGCGGGGATTTGACAGAGAGTTCGAGTTCTTTTGGTGATACAACTTCAGGGACAGAGAATGGTTACGTGTCGGATGGTGATGAAGTTCAGTCGCCGTTGCATGGAAATGAGTTCGCCCCATTCTATGATGAATATTTTGGTGCATTTGAAACAAGGAGGAAAAGGTTGACCACTCATTGGAATAAGTTTATACGTCCTCTTATGTGGCGCTTGAAATGGCTGGAACTGAAGATTAAGGAACTTCAGTCTCAGGACAAAAAATATGATTCACAGCTTGCAAAGTATGCCCAAATAGAGCAGTCTGAATTTGATGCAATGTCAAAGTTAACGAAAAGGAAGAAAAGAAAGAGAGTTGAAGATACTACCAATATAGCATCTTATATGTCCCAACATAATCTTTTCTCCTATGAAAGTAAGAGGTCTTGTGCTAATGGTGTTTTCATGGAGGGAGACTGGGGTGATTCTGGAGACAAAACTTGCACTGGCAATAAAGATGTTGAGACAAATGATATATGGTCATCTCTTGAATTCAAGGATGGTAATAGTTCCTTGGAAGATATTCTTTGGAAGATTGAAGTGGTACATTCAAAAGTATGGAAGTTGAAGACTCGAGTGGACAAGGTCGTGAAGGAAAATCAAGGAAACATTTCTTCAGCTAACAACTTCCTAGTACCCTGTGATGCATTGATGGGCTCTGCTCAAAATCCTGCTTTTCGTGGTGAAAATGGAAATAGATTACTGTTCGAAAGTTTATCCACTGCATCTATGCATATCAAATGTGACACGGGAGATCCATTCTTGCCTGAGATTGCAGTTTCAAATCGTGCAGAGCTGACCCCGCTTCCTGGTATTACTGTCACAGATCAGCCTCTGGTTGGCAGAGTACTTGAAAATGCCGAGGATATACACCTTATACCTAAGGATGCTGTCAAGGCTGAGCCATATGATTTAGAAGTTAAAGATCCGTTCATACGGAAGCCTTGCATATCGCCTGAAGAGCAGAAAACCAGTTGTCCTGCTCCAGTTTCGGAAACTGTGTTGCCCACAAATGTTCCTGTTCGGTATTCAGAAAAAGTGATGCCCACAAGCTCCAGAGTACCTAATACAACTGAAGAACCCGATTCCTCTACCAGGACTGCGTTGCCTTGGAAGACAAGAAATCAAGGGAGGCGAAAACCCGGCTCGTACTTGAATACTTTAAACCGGAAATCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

432

Amino Acids

48.63

Weight (kDa)

5.64

Isoelectric Point (pI)

60.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006015)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G37440 AT4G37440 AT4G37440
fragaria_vesca	FvH4_7g09930 FvH4_7g09930 FvH4_7g09930 FvH4_7g09930
malus_domestica	MD07G1104500.v1.1
prunus_persica	Prupe.2G128100_v2.0.a1 Prupe.2G128100_v2.0.a1 Prupe.2G128100_v2.0.a1 Prupe.2G128100_v2.0.a1
pyrus_communis	pycom07g08950
rosa_chinensis	RchiOBHm_Chr1g0347491 RchiOBHm_Chr1g0347521
rosa_laevigata	RLG00000028746
rosa_multiflora	Rmu_ssc0000280.1_g000003
rosa_roxburghii	Rroxscaffold_4G00307760
rosa_rugosa	Rorug01G0187100 Rorug01G0187200 Rorug01G0187300
rosa_samantha	Rh1AG204500 Rh1BG170300 Rh1CG189600 Rh1DG200600
rosa_wichuraiana	Rw0G013610 Rw1G017160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	258
AciI	CCGC	2 cut(s)	84, 920
AclWI	GGATC	2 cut(s)	866, 1037
AcsI	RAATTY	2 cut(s)	386, 608
AcuI	CTGAAG	6 cut(s)	111, 308, 329, 717, 1095, 1212
AfaI	GTAC	5 cut(s)	663, 753, 966, 1179, 1268
AfiI	CCNNNNNNNGG	5 cut(s)	182, 258, 926, 956, 1212
AflIII	ACRYGT	1 cut(s)	147
AjnI	CCWGG	2 cut(s)	925, 1211
AluBI	AGCT	4 cut(s)	355, 737, 913, 1170
AluI	AGCT	4 cut(s)	355, 737, 913, 1170
Alw26I	GTCTC	5 cut(s)	33, 333, 525, 543, 575
AlwI	GGATC	2 cut(s)	866, 1037
AlwNI	CAGNNNCTG	1 cut(s)	952
Ama87I	CYCGRG	1 cut(s)	690
ApoI	RAATTY	2 cut(s)	386, 608
ArsI	GACNNNNNNTTYG	2 cut(s)	85, 117
Asp700I	GAANNNNTTC	2 cut(s)	639, 727
AspLEI	GCGC	1 cut(s)	291
AsuC2I	CCSGG	1 cut(s)	1260
AsuHPI	GGTGA	4 cut(s)	128, 170, 551, 812
AsuII	TTCGAA	1 cut(s)	825
AvaI	CYCGRG	1 cut(s)	690
AxyI	CCTNAGG	1 cut(s)	999
BanII	GRGCYC	1 cut(s)	776
BbsI	GAAGAC	2 cut(s)	692, 1238
BccI	CCATC	4 cut(s)	17, 149, 611, 763
BceAI	ACGGC	1 cut(s)	160
BciT130I	CCWGG	2 cut(s)	927, 1213
BcnI	CCSGG	1 cut(s)	1260
BcoDI	GTCTC	5 cut(s)	33, 333, 525, 543, 575
BfaI	CTAG	2 cut(s)	44, 749
BfoI	RGCGCY	1 cut(s)	292
BlpI	GCTNAGC	1 cut(s)	1017
BmcAI	AGTACT	1 cut(s)	966
Bme1390I	CCNGG	3 cut(s)	927, 1213, 1260
BmeT110I	CYCGRG	1 cut(s)	690
BmrFI	CCNGG	3 cut(s)	927, 1213, 1260
BmrI	ACTGGG	1 cut(s)	544
BmsI	GCATC	6 cut(s)	382, 464, 751, 851, 994, 1149
BmuI	ACTGGG	1 cut(s)	544
BpiI	GAAGAC	2 cut(s)	692, 1238
BpmI	CTGGAG	3 cut(s)	567, 1086, 1156
Bpu10I	CCTNAGC	1 cut(s)	18
Bpu1102I	GCTNAGC	1 cut(s)	1017
Bpu14I	TTCGAA	1 cut(s)	825
BpuMI	CCSGG	1 cut(s)	1260
BsaAI	YACGTR	1 cut(s)	148
BsaI	GGTCTC	1 cut(s)	33
BsaJI	CCNNGG	3 cut(s)	630, 978, 1226
BsaWI	WCCGGW	1 cut(s)	1284
Bsc4I	CCNNNNNNNGG	5 cut(s)	182, 258, 926, 956, 1212
Bse1I	ACTGG	5 cut(s)	11, 539, 568, 1089, 1103
Bse21I	CCTNAGG	1 cut(s)	999
Bse3DI	GCAATG	1 cut(s)	402
BseBI	CCWGG	2 cut(s)	927, 1213
BseDI	CCNNGG	3 cut(s)	630, 978, 1226
BseGI	GGATG	4 cut(s)	28, 160, 622, 1009
BseLI	CCNNNNNNNGG	5 cut(s)	182, 258, 926, 956, 1212
BseMI	GCAATG	1 cut(s)	402
BseMII	CTCAG	3 cut(s)	344, 876, 1008
BseNI	ACTGG	5 cut(s)	11, 539, 568, 1089, 1103
BsgI	GTGCAG	1 cut(s)	927
BsiHKCI	CYCGRG	1 cut(s)	690
BsiSI	CCGG	2 cut(s)	1260, 1285
BslFI	GGGAC	2 cut(s)	145, 451
BslI	CCNNNNNNNGG	5 cut(s)	182, 258, 926, 956, 1212
BsmAI	GTCTC	5 cut(s)	33, 333, 525, 543, 575
BsmFI	GGGAC	2 cut(s)	145, 451
BsmI	GAATGC	1 cut(s)	86
Bso31I	GGTCTC	1 cut(s)	33
BsoBI	CYCGRG	1 cut(s)	690
Bsp119I	TTCGAA	1 cut(s)	825
Bsp1286I	GDGCHC	1 cut(s)	776
Bsp143I	GATC	3 cut(s)	871, 943, 1042
Bsp1720I	GCTNAGC	1 cut(s)	1017
BspACI	CCGC	2 cut(s)	84, 920
BspCNI	CTCAG	3 cut(s)	343, 877, 1009
BspPI	GGATC	2 cut(s)	866, 1037
BspQI	GCTCTTC	1 cut(s)	1071
BspT104I	TTCGAA	1 cut(s)	825
BspTNI	GGTCTC	1 cut(s)	33
BsrDI	GCAATG	1 cut(s)	402
BsrI	ACTGG	5 cut(s)	11, 539, 568, 1089, 1103
BssECI	CCNNGG	3 cut(s)	630, 978, 1226
BssMI	GATC	3 cut(s)	871, 943, 1042
BssT1I	CCWWGG	2 cut(s)	630, 1226
Bst2UI	CCWGG	2 cut(s)	927, 1213
Bst4CI	ACNGT	3 cut(s)	822, 937, 1117
Bst6I	CTCTTC	1 cut(s)	1071
BstAPI	GCANNNNNTGC	1 cut(s)	365
BstBAI	YACGTR	1 cut(s)	148
BstBI	TTCGAA	1 cut(s)	825
BstC8I	GCNNGC	1 cut(s)	357
BstDEI	CTNAG	5 cut(s)	18, 330, 885, 999, 1017
BstENI	CCTNNNNNAGG	1 cut(s)	1210
BstF5I	GGATG	4 cut(s)	28, 160, 622, 1009
BstH2I	RGCGCY	1 cut(s)	292
BstHHI	GCGC	1 cut(s)	291
BstKTI	GATC	3 cut(s)	874, 946, 1045
BstMAI	GTCTC	5 cut(s)	33, 333, 525, 543, 575
BstMBI	GATC	3 cut(s)	871, 943, 1042
BstMWI	GCNNNNNNNGC	4 cut(s)	365, 919, 1013, 1078
BstNI	CCWGG	2 cut(s)	927, 1213
BstSCI	CCNGG	3 cut(s)	925, 1211, 1258
BstV2I	GAAGAC	2 cut(s)	692, 1238
BstX2I	RGATCY	2 cut(s)	871, 1042
BstYI	RGATCY	2 cut(s)	871, 1042
Bsu36I	CCTNAGG	1 cut(s)	999
BtsCI	GGATG	4 cut(s)	28, 160, 622, 1009
BtsI	GCAGTG	1 cut(s)	837
BtsIMutI	CAGTG	2 cut(s)	561, 837
Cac8I	GCNNGC	1 cut(s)	357
CaiI	CAGNNNCTG	1 cut(s)	952
CfoI	GCGC	1 cut(s)	291
Csp6I	GTAC	5 cut(s)	662, 752, 965, 1178, 1267
CviAII	CATG	2 cut(s)	182, 523
CviQI	GTAC	5 cut(s)	662, 752, 965, 1178, 1267
DdeI	CTNAG	5 cut(s)	18, 330, 885, 999, 1017
DpnI	GATC	3 cut(s)	873, 945, 1044
DpnII	GATC	3 cut(s)	871, 943, 1042
DraI	TTTAAA	1 cut(s)	1281
Eam1104I	CTCTTC	1 cut(s)	1071
EarI	CTCTTC	1 cut(s)	1071
Eco130I	CCWWGG	2 cut(s)	630, 1226
Eco24I	GRGCYC	1 cut(s)	776
Eco31I	GGTCTC	1 cut(s)	33
Eco57I	CTGAAG	6 cut(s)	111, 308, 329, 717, 1095, 1212
Eco81I	CCTNAGG	1 cut(s)	999
Eco88I	CYCGRG	1 cut(s)	690
EcoNI	CCTNNNNNAGG	1 cut(s)	1210
EcoRI	GAATTC	1 cut(s)	608
EcoRII	CCWGG	2 cut(s)	925, 1211
EcoT14I	CCWWGG	2 cut(s)	630, 1226
EcoT22I	ATGCAT	2 cut(s)	766, 852
EcoT38I	GRGCYC	1 cut(s)	776
ErhI	CCWWGG	2 cut(s)	630, 1226
FaeI	CATG	2 cut(s)	185, 526
FalI	AAGNNNNNCTT	4 cut(s)	39, 71, 627, 659
FaqI	GGGAC	2 cut(s)	145, 451
FatI	CATG	2 cut(s)	181, 522
FauI	CCCGC	2 cut(s)	77, 927
FauNDI	CATATG	1 cut(s)	1024
FokI	GGATG	4 cut(s)	35, 167, 629, 1016
FriOI	GRGCYC	1 cut(s)	776
FspBI	CTAG	2 cut(s)	44, 749
GlaI	GCGC	1 cut(s)	290
GsuI	CTGGAG	3 cut(s)	567, 1086, 1156
HaeII	RGCGCY	1 cut(s)	292
HapII	CCGG	2 cut(s)	1260, 1285
HhaI	GCGC	1 cut(s)	291
Hin1II	CATG	2 cut(s)	185, 526
Hin6I	GCGC	1 cut(s)	289
HinP1I	GCGC	1 cut(s)	289
HincII	GTYRAC	2 cut(s)	249, 408
HindII	GTYRAC	2 cut(s)	249, 408
HinfI	GANTC	4 cut(s)	347, 542, 688, 1202
HpaI	GTTAAC	1 cut(s)	408
HpaII	CCGG	2 cut(s)	1260, 1285
HphI	GGTGA	4 cut(s)	128, 170, 551, 812
Hpy166II	GTNNAC	3 cut(s)	249, 408, 697
Hpy188I	TCNGA	4 cut(s)	154, 385, 1111, 1150
Hpy188III	TCNNGA	5 cut(s)	332, 546, 605, 706, 1173
Hpy8I	GTNNAC	3 cut(s)	249, 408, 697
HpyAV	CCTTC	1 cut(s)	703
HpyCH4III	ACNGT	3 cut(s)	822, 937, 1117
HpyCH4IV	ACGT	2 cut(s)	147, 274
HpyF10VI	GCNNNNNNNGC	4 cut(s)	365, 919, 1013, 1078
HpyF3I	CTNAG	5 cut(s)	18, 330, 885, 999, 1017
HpySE526I	ACGT	2 cut(s)	147, 274
Hsp92II	CATG	2 cut(s)	185, 526
HspAI	GCGC	1 cut(s)	289
KspAI	GTTAAC	1 cut(s)	408
Kzo9I	GATC	3 cut(s)	871, 943, 1042
LguI	GCTCTTC	1 cut(s)	1071
LmnI	GCTCC	2 cut(s)	1105, 1175
LweI	GCATC	6 cut(s)	382, 464, 751, 851, 994, 1149
MaeI	CTAG	2 cut(s)	44, 749
MaeII	ACGT	2 cut(s)	147, 274
MaeIII	GTNAC	3 cut(s)	143, 860, 937
MalI	GATC	3 cut(s)	873, 945, 1044
MboI	GATC	3 cut(s)	871, 943, 1042
MflI	RGATCY	2 cut(s)	871, 1042
MhlI	GDGCHC	1 cut(s)	776
MluCI	AATT	2 cut(s)	386, 608
MlyI	GAGTC	1 cut(s)	682
MmeI	TCCRAC	1 cut(s)	132
MnlI	CCTC	8 cut(s)	231, 288, 492, 520, 960, 973, 1216, 1242
Mph1103I	ATGCAT	2 cut(s)	766, 852
MroXI	GAANNNNTTC	2 cut(s)	639, 727
MseI	TTAA	4 cut(s)	315, 407, 1038, 1280
MslI	CAYNNNNRTG	1 cut(s)	186
MspI	CCGG	2 cut(s)	1260, 1285
MspR9I	CCNGG	3 cut(s)	927, 1213, 1260
Mva1269I	GAATGC	1 cut(s)	86
MvaI	CCWGG	2 cut(s)	927, 1213
MwoI	GCNNNNNNNGC	4 cut(s)	365, 919, 1013, 1078
NciI	CCSGG	1 cut(s)	1260
NdeI	CATATG	1 cut(s)	1024
NdeII	GATC	3 cut(s)	871, 943, 1042
NlaIII	CATG	2 cut(s)	185, 526
NmeAIII	GCCGAG	1 cut(s)	1003
NmuCI	GTSAC	2 cut(s)	860, 937
NsiI	ATGCAT	2 cut(s)	766, 852
NspV	TTCGAA	1 cut(s)	825
PaeR7I	CTCGAG	1 cut(s)	690
PciSI	GCTCTTC	1 cut(s)	1071
PctI	GAATGC	1 cut(s)	86
PdmI	GAANNNNTTC	2 cut(s)	639, 727
PfeI	GAWTC	3 cut(s)	347, 542, 1202
PflFI	GACNNNGTC	1 cut(s)	701
PflMI	CCANNNNNTGG	1 cut(s)	258
PleI	GAGTC	1 cut(s)	682
PpsI	GAGTC	1 cut(s)	682
Ppu21I	YACGTR	1 cut(s)	148
Psp6I	CCWGG	2 cut(s)	925, 1211
PspGI	CCWGG	2 cut(s)	925, 1211
PspXI	VCTCGAGB	1 cut(s)	690
PstNI	CAGNNNCTG	1 cut(s)	952
PsuI	RGATCY	2 cut(s)	871, 1042
PsyI	GACNNNGTC	1 cut(s)	701
RsaI	GTAC	5 cut(s)	663, 753, 966, 1179, 1268
RsaNI	GTAC	5 cut(s)	662, 752, 965, 1178, 1267
RseI	CAYNNNNRTG	1 cut(s)	186
SapI	GCTCTTC	1 cut(s)	1071
SaqAI	TTAA	4 cut(s)	315, 407, 1038, 1280
Sau3AI	GATC	3 cut(s)	871, 943, 1042
ScaI	AGTACT	1 cut(s)	966
SchI	GAGTC	1 cut(s)	682
ScrFI	CCNGG	3 cut(s)	927, 1213, 1260
SduI	GDGCHC	1 cut(s)	776
SfaNI	GCATC	6 cut(s)	382, 464, 751, 851, 994, 1149
Sfr274I	CTCGAG	1 cut(s)	690
SfuI	TTCGAA	1 cut(s)	825
SlaI	CTCGAG	1 cut(s)	690
SmiMI	CAYNNNNRTG	1 cut(s)	186
SmlI	CTYRAG	1 cut(s)	690
SmoI	CTYRAG	1 cut(s)	690
Sse9I	AATT	2 cut(s)	386, 608
SsiI	CCGC	2 cut(s)	84, 920
SspI	AATATT	1 cut(s)	215
SspMI	CTAG	2 cut(s)	44, 749
StyD4I	CCNGG	3 cut(s)	925, 1211, 1258
StyI	CCWWGG	2 cut(s)	630, 1226
TaaI	ACNGT	3 cut(s)	822, 937, 1117
TaiI	ACGT	2 cut(s)	150, 277
TaqI	TCGA	3 cut(s)	104, 691, 825
TasI	AATT	2 cut(s)	386, 608
TatI	WGTACW	1 cut(s)	964
TfiI	GAWTC	3 cut(s)	347, 542, 1202
Tru1I	TTAA	4 cut(s)	315, 407, 1038, 1280
Tru9I	TTAA	4 cut(s)	315, 407, 1038, 1280
TscAI	CASTG	2 cut(s)	568, 844
TseFI	GTSAC	2 cut(s)	860, 937
Tsp45I	GTSAC	2 cut(s)	860, 937
TspDTI	ATGAA	5 cut(s)	177, 225, 504, 511, 1039
TspGWI	ACGGA	2 cut(s)	1035, 1069
TspRI	CASTG	2 cut(s)	568, 844
Tth111I	GACNNNGTC	1 cut(s)	701
Van91I	CCANNNNNTGG	1 cut(s)	258
XagI	CCTNNNNNAGG	1 cut(s)	1210
XapI	RAATTY	2 cut(s)	386, 608
XhoI	CTCGAG	1 cut(s)	690
XmnI	GAANNNNTTC	2 cut(s)	639, 727
XspI	CTAG	2 cut(s)	44, 749
ZrmI	AGTACT	1 cut(s)	966
Zsp2I	ATGCAT	2 cut(s)	766, 852

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.