Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0006015

Physical Location & Seq

Genomic Coordinates Forward (+)

40108273 .. 40109765

Gene Structure 1493 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ57362

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

ATGGGACCTTTACTTTTGCCTGGGAGTGCAGTTTCAAGTCATGAAGCTGGGTTAACCCCTCTCCCTGGTATGATTGGGAACACAGATCAGCCTTGGATTGGCACTGAACAGGAAAATGCCGAGGATGGATACCTTGTACCTAATGCAGCTGTCAAGAAAGAGCAACATGATTTTGAAAACAATAAAGATCAGGTCATAGAGCAGCCTCTCCTATCGAGTGCACAGCAGAAAACTAATTTCTCAGTTCCAGCTTCAAAAACTGTGCCAAAAAAATCCAGCTTACCTAATGCAACTCAACAACCCGATTCCACTACGAGGACTGAATTCCCTTGGAACACAAGAAATCGTGGGAAGCGTAAACCTGGTTCGAATAGGTGGAGCCGGAAATCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

130

Amino Acids

14.28

Weight (kDa)

9.34

Isoelectric Point (pI)

50.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0006015)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G37440 AT4G37440 AT4G37440
fragaria_vesca	FvH4_7g09930 FvH4_7g09930 FvH4_7g09930 FvH4_7g09930
malus_domestica	MD07G1104500.v1.1
prunus_persica	Prupe.2G128100_v2.0.a1 Prupe.2G128100_v2.0.a1 Prupe.2G128100_v2.0.a1 Prupe.2G128100_v2.0.a1
pyrus_communis	pycom07g08950
rosa_chinensis	RchiOBHm_Chr1g0347491 RchiOBHm_Chr1g0347521
rosa_laevigata	RLG00000028746
rosa_multiflora	Rmu_ssc0000280.1_g000003
rosa_roxburghii	Rroxscaffold_4G00307760
rosa_rugosa	Rorug01G0187100 Rorug01G0187200 Rorug01G0187300
rosa_samantha	Rh1AG204500 Rh1BG170300 Rh1CG189600 Rh1DG200600
rosa_wichuraiana	Rw0G013610 Rw1G017160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	323
AfaI	GTAC	1 cut(s)	138
AfiI	CCNNNNNNNGG	3 cut(s)	65, 98, 315
AgsI	TTSAA	3 cut(s)	36, 176, 255
AjnI	CCWGG	3 cut(s)	19, 64, 361
AluBI	AGCT	4 cut(s)	47, 149, 251, 279
AluI	AGCT	4 cut(s)	47, 149, 251, 279
Alw21I	GWGCWC	1 cut(s)	223
Alw44I	GTGCAC	1 cut(s)	219
ApaLI	GTGCAC	1 cut(s)	219
ApeKI	GCWGC	2 cut(s)	146, 202
ApoI	RAATTY	1 cut(s)	323
AspS9I	GGNCC	1 cut(s)	5
AsuII	TTCGAA	1 cut(s)	368
AvaII	GGWCC	1 cut(s)	5
BaeGI	GKGCMC	1 cut(s)	223
Bbv12I	GWGCWC	1 cut(s)	223
BbvI	GCAGC	2 cut(s)	158, 214
BccI	CCATC	1 cut(s)	119
BciT130I	CCWGG	3 cut(s)	21, 66, 363
BciVI	GTATCC	1 cut(s)	122
BfaI	CTAG	1 cut(s)	391
BfuI	GTATCC	1 cut(s)	122
BisI	GCNGC	2 cut(s)	147, 203
BlsI	GCNGC	2 cut(s)	148, 204
Bme1390I	CCNGG	3 cut(s)	21, 66, 363
Bme18I	GGWCC	1 cut(s)	5
BmgT120I	GGNCC	1 cut(s)	5
BmiI	GGNNCC	2 cut(s)	6, 380
BmrFI	CCNGG	3 cut(s)	21, 66, 363
Bpu14I	TTCGAA	1 cut(s)	368
BsaJI	CCNNGG	5 cut(s)	20, 64, 92, 120, 329
Bsc4I	CCNNNNNNNGG	3 cut(s)	65, 98, 315
BseBI	CCWGG	3 cut(s)	21, 66, 363
BseDI	CCNNGG	5 cut(s)	20, 64, 92, 120, 329
BseGI	GGATG	1 cut(s)	130
BseLI	CCNNNNNNNGG	3 cut(s)	65, 98, 315
BseMII	CTCAG	1 cut(s)	255
BseSI	GKGCMC	1 cut(s)	223
BseXI	GCAGC	2 cut(s)	158, 214
BseYI	CCCAGC	1 cut(s)	47
BsgI	GTGCAG	1 cut(s)	48
BsiHKAI	GWGCWC	1 cut(s)	223
BsiSI	CCGG	1 cut(s)	382
BslFI	GGGAC	1 cut(s)	18
BslI	CCNNNNNNNGG	3 cut(s)	65, 98, 315
BsmFI	GGGAC	1 cut(s)	18
Bsp119I	TTCGAA	1 cut(s)	368
Bsp1286I	GDGCHC	1 cut(s)	223
Bsp143I	GATC	2 cut(s)	85, 187
BspCNI	CTCAG	1 cut(s)	254
BspHI	TCATGA	1 cut(s)	40
BspLI	GGNNCC	2 cut(s)	6, 380
BspT104I	TTCGAA	1 cut(s)	368
BssECI	CCNNGG	5 cut(s)	20, 64, 92, 120, 329
BssMI	GATC	2 cut(s)	85, 187
BssT1I	CCWWGG	2 cut(s)	92, 329
Bst2UI	CCWGG	3 cut(s)	21, 66, 363
Bst4CI	ACNGT	1 cut(s)	262
BstBI	TTCGAA	1 cut(s)	368
BstDEI	CTNAG	1 cut(s)	241
BstF5I	GGATG	1 cut(s)	130
BstKTI	GATC	2 cut(s)	88, 190
BstMBI	GATC	2 cut(s)	85, 187
BstNI	CCWGG	3 cut(s)	21, 66, 363
BstSCI	CCNGG	3 cut(s)	19, 64, 361
BstSLI	GKGCMC	1 cut(s)	223
BstV1I	GCAGC	2 cut(s)	158, 214
BsuI	GTATCC	1 cut(s)	122
BtsCI	GGATG	1 cut(s)	130
BtsIMutI	CAGTG	1 cut(s)	102
CciI	TCATGA	1 cut(s)	40
Cfr13I	GGNCC	1 cut(s)	5
CsiI	ACCWGGT	1 cut(s)	361
Csp6I	GTAC	1 cut(s)	137
CviAII	CATG	2 cut(s)	41, 167
CviJI	RGCY	7 cut(s)	47, 91, 149, 205, 251, 279, 381
CviKI_1	RGCY	7 cut(s)	47, 91, 149, 205, 251, 279, 381
CviQI	GTAC	1 cut(s)	137
DdeI	CTNAG	1 cut(s)	241
DpnI	GATC	2 cut(s)	87, 189
DpnII	GATC	2 cut(s)	85, 187
Eco130I	CCWWGG	2 cut(s)	92, 329
Eco47I	GGWCC	1 cut(s)	5
EcoO109I	RGGNCCY	1 cut(s)	5
EcoRI	GAATTC	1 cut(s)	323
EcoRII	CCWGG	3 cut(s)	19, 64, 361
EcoT14I	CCWWGG	2 cut(s)	92, 329
ErhI	CCWWGG	2 cut(s)	92, 329
FaeI	CATG	2 cut(s)	44, 170
FaiI	YATR	4 cut(s)	42, 71, 168, 197
FaqI	GGGAC	1 cut(s)	18
FatI	CATG	2 cut(s)	40, 166
Fnu4HI	GCNGC	2 cut(s)	147, 203
FokI	GGATG	1 cut(s)	137
Fsp4HI	GCNGC	2 cut(s)	147, 203
FspBI	CTAG	1 cut(s)	391
GluI	GCNGC	2 cut(s)	147, 203
GsaI	CCCAGC	1 cut(s)	51
HapII	CCGG	1 cut(s)	382
Hin1II	CATG	2 cut(s)	44, 170
HincII	GTYRAC	1 cut(s)	54
HindII	GTYRAC	1 cut(s)	54
HinfI	GANTC	1 cut(s)	305
HpaI	GTTAAC	1 cut(s)	54
HpaII	CCGG	1 cut(s)	382
Hpy166II	GTNNAC	3 cut(s)	54, 221, 359
Hpy188III	TCNNGA	2 cut(s)	41, 154
Hpy8I	GTNNAC	3 cut(s)	54, 221, 359
HpyCH4III	ACNGT	1 cut(s)	262
HpyCH4V	TGCA	4 cut(s)	29, 146, 221, 290
HpyF3I	CTNAG	1 cut(s)	241
Hsp92II	CATG	2 cut(s)	44, 170
KspAI	GTTAAC	1 cut(s)	54
Kzo9I	GATC	2 cut(s)	85, 187
LmnI	GCTCC	1 cut(s)	378
Lsp1109I	GCAGC	2 cut(s)	158, 214
MabI	ACCWGGT	1 cut(s)	361
MaeI	CTAG	1 cut(s)	391
MalI	GATC	2 cut(s)	87, 189
MboI	GATC	2 cut(s)	85, 187
MhlI	GDGCHC	1 cut(s)	223
MluCI	AATT	2 cut(s)	235, 323
MnlI	CCTC	4 cut(s)	69, 115, 216, 309
MseI	TTAA	1 cut(s)	53
MspA1I	CMGCKG	1 cut(s)	149
MspI	CCGG	1 cut(s)	382
MspR9I	CCNGG	3 cut(s)	21, 66, 363
MvaI	CCWGG	3 cut(s)	21, 66, 363
NdeII	GATC	2 cut(s)	85, 187
NlaIII	CATG	2 cut(s)	44, 170
NlaIV	GGNNCC	2 cut(s)	6, 380
NmeAIII	GCCGAG	1 cut(s)	145
NspV	TTCGAA	1 cut(s)	368
PagI	TCATGA	1 cut(s)	40
PcsI	WCGNNNNNNNCGW	1 cut(s)	352
PfeI	GAWTC	1 cut(s)	305
PkrI	GCNGC	2 cut(s)	148, 204
PpuMI	RGGWCCY	1 cut(s)	5
Psp5II	RGGWCCY	1 cut(s)	5
Psp6I	CCWGG	3 cut(s)	19, 64, 361
PspFI	CCCAGC	1 cut(s)	47
PspGI	CCWGG	3 cut(s)	19, 64, 361
PspN4I	GGNNCC	2 cut(s)	6, 380
PspPI	GGNCC	1 cut(s)	5
PspPPI	RGGWCCY	1 cut(s)	5
PsrI	GAACNNNNNNTAC	2 cut(s)	349, 381
PvuII	CAGCTG	1 cut(s)	149
RsaI	GTAC	1 cut(s)	138
RsaNI	GTAC	1 cut(s)	137
SaqAI	TTAA	1 cut(s)	53
SatI	GCNGC	2 cut(s)	147, 203
Sau3AI	GATC	2 cut(s)	85, 187
Sau96I	GGNCC	1 cut(s)	5
ScrFI	CCNGG	3 cut(s)	21, 66, 363
SduI	GDGCHC	1 cut(s)	223
SexAI	ACCWGGT	1 cut(s)	361
SfuI	TTCGAA	1 cut(s)	368
SinI	GGWCC	1 cut(s)	5
Sse9I	AATT	2 cut(s)	235, 323
SspMI	CTAG	1 cut(s)	391
StyD4I	CCNGG	3 cut(s)	19, 64, 361
StyI	CCWWGG	2 cut(s)	92, 329
TaaI	ACNGT	1 cut(s)	262
TaqI	TCGA	2 cut(s)	215, 368
TasI	AATT	2 cut(s)	235, 323
TfiI	GAWTC	1 cut(s)	305
Tru1I	TTAA	1 cut(s)	53
Tru9I	TTAA	1 cut(s)	53
TscAI	CASTG	1 cut(s)	109
TseI	GCWGC	2 cut(s)	146, 202
TspDTI	ATGAA	1 cut(s)	57
TspRI	CASTG	1 cut(s)	109
VneI	GTGCAC	1 cut(s)	219
VpaK11BI	GGWCC	1 cut(s)	5
XapI	RAATTY	1 cut(s)	323
XspI	CTAG	1 cut(s)	391

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.