Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0006015

Physical Location & Seq

Genomic Coordinates Forward (+)

18528244 .. 18535004

Gene Structure 6761 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G128100.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1509 bp

ATGGGCCCTGAATTGGAGGTGAAACCAAAGTCGGGAGCTGCTATGGAAGTTTCAGTTGCTAAGGATGGAACTACCCATCATGACGTAGTCGTAGATGATAAGTTTATGCCTTGTGTAAGTAACTACAAAGATAATATCTTGGAAATGGAAGAAACATTGGTTGGACAAACTACTGTCTCAAATAAAAGGGAGAATGCGGAGCTAAACAGAACTGGTGGTACAAGTCCTGATGATGTTCAGATTCTTGAAGGTGAATGTGGGGATTTGACAGAGAATTCGAGTTCTTTTGGTGATACAATTTCTGGGACAGAGGATGGTTCAACGTTGGATGGTGACGAAGCTGATTCACAGTTAGGTGAAAATGAGCACGCTTCAGTATATGATGGGTATTTTGGTGCATTTCAAACAAGGAAGAAAAAGTTGACCCCCGAGTGGAGGAATTTTATACGTCCTGAAATGTGGCGGCTTAAATGGCTGGAACTGCAGATTAAGGAACTTCTGTCCCAGACCCAAAAGTATGATTCCGAACTTGCAAAGTATGACAAAGAAAAGCTGTCTGCATTTGAGGGCTTCACATCAGAAGGTTTTGATGCAATGCCAACACCAAAGTTGATGAAAAGGAAGAAAAGAAAGAGAGTTGAAGATACTACTGACATAGCATCATATATGTCACACCATAATCTGTTCTCCTATGTTCCAGAAAGTAAGAAGACTGCTGCTAATGGTGTTTGCATGCAGGAAGACTGGGGTGATCTCGCAGGAGGTAAAACTAGTTATGGCCATAATGAGTTTGAGACAAATGATATATGGTCATCTCTCGAGTTCAGAGATGGTAATAGTTCCTTGGAAGATATTCTTTGGAAGATTGAAGTGGTACATTCACAAGTATGGCAGTTGAAGACTCGAATTGACAAGGTCGTGCAGGAAAATCCTGGGAACTTTTCTGCTAACCATTTCCTAGTACCATGTGATACATCGAATGGCTCTGCTCAAAATCCTGCTTCTCCTCCTGAAAATGGAAATACATTACTAGTGGAAACTTTATCCACTGCATCTCAGCATGTCAAGTTTAACATTGGAAATCTATTTTTACCTCAGAGTGCAGTTTCAAGTCATGAAGAGCTGACCCCTCTTCCTGGTATGATTGGAAATACAGATCAGCCTTGGCTTGGCAATGTACTTGAAAATGTTGAGGATGGGTGCCTTATACCTAATGCTGCTGTCAAGGATGAGCCATATAATTTTGAAGTTAAAGATCAGCTCATCCAGAAGCCTCACATATCACTTGAAGAGCAGGAAACCAATTTTCCTGTTCCGGTATCAGAAACTGAGTTGCCCACAAACTTACCTGTTCCGGTTTCGGAAACTGCATTGCCGACAAGTTCCAGTGTACCTAATGCAACTCATGAATCAGATTCCACCACCAGGACTAATTTCCGTTGGAACACAAGAAATCGAGGGAGGAGAAAACCTGGCTCGTATGCATATAAGTTGAGCCGGAAATCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

503

Amino Acids

56.01

Weight (kDa)

4.91

Isoelectric Point (pI)

45.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006015)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G37440 AT4G37440 AT4G37440
fragaria_vesca	FvH4_7g09930 FvH4_7g09930 FvH4_7g09930 FvH4_7g09930
malus_domestica	MD07G1104500.v1.1
prunus_persica	Prupe.2G128100_v2.0.a1 Prupe.2G128100_v2.0.a1 Prupe.2G128100_v2.0.a1 Prupe.2G128100_v2.0.a1
pyrus_communis	pycom07g08950
rosa_chinensis	RchiOBHm_Chr1g0347491 RchiOBHm_Chr1g0347521
rosa_laevigata	RLG00000028746
rosa_multiflora	Rmu_ssc0000280.1_g000003
rosa_roxburghii	Rroxscaffold_4G00307760
rosa_rugosa	Rorug01G0187100 Rorug01G0187200 Rorug01G0187300
rosa_samantha	Rh1AG204500 Rh1BG170300 Rh1CG189600 Rh1DG200600
rosa_wichuraiana	Rw0G013610 Rw1G017160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1200
AciI	CCGC	2 cut(s)	197, 463
AclI	AACGTT	1 cut(s)	323
AcoI	YGGCCR	1 cut(s)	778
AcsI	RAATTY	2 cut(s)	274, 439
AcuI	CTGAAG	1 cut(s)	357
AfaI	GTAC	5 cut(s)	220, 876, 963, 1179, 1392
AfiI	CCNNNNNNNGG	8 cut(s)	13, 32, 432, 435, 1016, 1136, 1169, 1425
AhlI	ACTAGT	2 cut(s)	770, 1030
AjnI	CCWGG	4 cut(s)	931, 1135, 1424, 1471
AjuI	GAANNNNNNNTTGG	2 cut(s)	144, 176
AluBI	AGCT	6 cut(s)	38, 202, 341, 553, 1123, 1261
AluI	AGCT	6 cut(s)	38, 202, 341, 553, 1123, 1261
Alw21I	GWGCWC	1 cut(s)	369
Alw26I	GTCTC	2 cut(s)	181, 788
AlwNI	CAGNNNCTG	1 cut(s)	1328
Ama87I	CYCGRG	2 cut(s)	428, 818
AoxI	GGCC	2 cut(s)	4, 778
ApaI	GGGCCC	1 cut(s)	8
ApeKI	GCWGC	3 cut(s)	38, 716, 1217
ApoI	RAATTY	2 cut(s)	274, 439
ArsI	GACNNNNNNTTYG	2 cut(s)	259, 291
Asp700I	GAANNNNTTC	1 cut(s)	852
AspS9I	GGNCC	2 cut(s)	4, 5
AsuHPI	GGTGA	6 cut(s)	31, 263, 302, 344, 368, 761
AvaI	CYCGRG	2 cut(s)	428, 818
BaeGI	GKGCMC	1 cut(s)	8
BalI	TGGCCA	1 cut(s)	780
BanI	GGYRCC	1 cut(s)	1200
BanII	GRGCYC	1 cut(s)	8
BbsI	GAAGAC	3 cut(s)	716, 747, 905
Bbv12I	GWGCWC	1 cut(s)	369
BbvI	GCAGC	3 cut(s)	25, 703, 1204
BccI	CCATC	7 cut(s)	59, 84, 308, 323, 377, 824, 1190
BciT130I	CCWGG	4 cut(s)	933, 1137, 1426, 1473
BcoDI	GTCTC	2 cut(s)	181, 788
BcuI	ACTAGT	2 cut(s)	770, 1030
BfaI	CTAG	3 cut(s)	771, 959, 1031
BfmI	CTRYAG	1 cut(s)	482
BisI	GCNGC	4 cut(s)	39, 464, 717, 1218
BlsI	GCNGC	4 cut(s)	40, 465, 718, 1219
Bme1390I	CCNGG	4 cut(s)	933, 1137, 1426, 1473
BmeT110I	CYCGRG	2 cut(s)	428, 818
BmgT120I	GGNCC	2 cut(s)	4, 5
BmiI	GGNNCC	2 cut(s)	6, 1202
BmrFI	CCNGG	4 cut(s)	933, 1137, 1426, 1473
BmrI	ACTGGG	1 cut(s)	754
BmsI	GCATC	3 cut(s)	580, 668, 1061
BmuI	ACTGGG	1 cut(s)	754
BpiI	GAAGAC	3 cut(s)	716, 747, 905
Bpu10I	CCTNAGC	1 cut(s)	60
BsaJI	CCNNGG	3 cut(s)	843, 932, 1163
BsaWI	WCCGGW	2 cut(s)	1315, 1354
Bsc4I	CCNNNNNNNGG	8 cut(s)	13, 32, 432, 435, 1016, 1136, 1169, 1425
Bse1I	ACTGG	3 cut(s)	217, 749, 1386
Bse3DI	GCAATG	3 cut(s)	600, 1180, 1370
BseBI	CCWGG	4 cut(s)	933, 1137, 1426, 1473
BseDI	CCNNGG	3 cut(s)	843, 932, 1163
BseGI	GGATG	6 cut(s)	70, 319, 334, 1201, 1234, 1263
BseLI	CCNNNNNNNGG	8 cut(s)	13, 32, 432, 435, 1016, 1136, 1169, 1425
BseMI	GCAATG	3 cut(s)	600, 1180, 1370
BseMII	CTCAG	3 cut(s)	1070, 1109, 1320
BseNI	ACTGG	3 cut(s)	217, 749, 1386
BseRI	GAGGAG	2 cut(s)	996, 1477
BseSI	GKGCMC	1 cut(s)	8
BseXI	GCAGC	3 cut(s)	25, 703, 1204
BsgI	GTGCAG	2 cut(s)	941, 1122
BshFI	GGCC	2 cut(s)	6, 780
BshNI	GGYRCC	1 cut(s)	1200
BsiHKAI	GWGCWC	1 cut(s)	369
BsiHKCI	CYCGRG	2 cut(s)	428, 818
BsiSI	CCGG	3 cut(s)	1316, 1355, 1498
BslFI	GGGAC	2 cut(s)	319, 487
BslI	CCNNNNNNNGG	8 cut(s)	13, 32, 432, 435, 1016, 1136, 1169, 1425
BsmAI	GTCTC	2 cut(s)	181, 788
BsmFI	GGGAC	2 cut(s)	319, 487
BsmI	GAATGC	1 cut(s)	199
BsnI	GGCC	2 cut(s)	6, 780
BsoBI	CYCGRG	2 cut(s)	428, 818
Bsp120I	GGGCCC	1 cut(s)	4
Bsp1286I	GDGCHC	2 cut(s)	8, 369
Bsp143I	GATC	3 cut(s)	751, 1156, 1255
BspACI	CCGC	2 cut(s)	197, 463
BspANI	GGCC	2 cut(s)	6, 780
BspCNI	CTCAG	3 cut(s)	1069, 1108, 1321
BspHI	TCATGA	3 cut(s)	79, 1114, 1405
BspLI	GGNNCC	2 cut(s)	6, 1202
BspMAI	CTGCAG	1 cut(s)	486
BspQI	GCTCTTC	2 cut(s)	1113, 1284
BspT107I	GGYRCC	1 cut(s)	1200
BsrDI	GCAATG	3 cut(s)	600, 1180, 1370
BsrI	ACTGG	3 cut(s)	217, 749, 1386
BssECI	CCNNGG	3 cut(s)	843, 932, 1163
BssMI	GATC	3 cut(s)	751, 1156, 1255
BssT1I	CCWWGG	2 cut(s)	843, 1163
Bst2UI	CCWGG	4 cut(s)	933, 1137, 1426, 1473
Bst4CI	ACNGT	2 cut(s)	175, 351
Bst6I	CTCTTC	3 cut(s)	1113, 1137, 1284
BstC8I	GCNNGC	2 cut(s)	369, 734
BstDEI	CTNAG	4 cut(s)	60, 1056, 1095, 1329
BstF5I	GGATG	6 cut(s)	70, 319, 334, 1201, 1234, 1263
BstKTI	GATC	3 cut(s)	754, 1159, 1258
BstMAI	GTCTC	2 cut(s)	181, 788
BstMBI	GATC	3 cut(s)	751, 1156, 1255
BstMWI	GCNNNNNNNGC	2 cut(s)	472, 481
BstNI	CCWGG	4 cut(s)	933, 1137, 1426, 1473
BstNSI	RCATGY	2 cut(s)	736, 1064
BstSCI	CCNGG	4 cut(s)	931, 1135, 1424, 1471
BstSFI	CTRYAG	1 cut(s)	482
BstSLI	GKGCMC	1 cut(s)	8
BstV1I	GCAGC	3 cut(s)	25, 703, 1204
BstV2I	GAAGAC	3 cut(s)	716, 747, 905
BsuRI	GGCC	2 cut(s)	6, 780
BtsCI	GGATG	6 cut(s)	70, 319, 334, 1201, 1234, 1263
BtsI	GCAGTG	1 cut(s)	1047
BtsIMutI	CAGTG	2 cut(s)	1047, 1393
Cac8I	GCNNGC	2 cut(s)	369, 734
CaiI	CAGNNNCTG	1 cut(s)	1328
CciI	TCATGA	3 cut(s)	79, 1114, 1405
Cfr13I	GGNCC	2 cut(s)	4, 5
Csp6I	GTAC	5 cut(s)	219, 875, 962, 1178, 1391
CviAII	CATG	6 cut(s)	80, 733, 966, 1061, 1115, 1406
CviQI	GTAC	5 cut(s)	219, 875, 962, 1178, 1391
DdeI	CTNAG	4 cut(s)	60, 1056, 1095, 1329
DpnI	GATC	3 cut(s)	753, 1158, 1257
DpnII	GATC	3 cut(s)	751, 1156, 1255
EaeI	YGGCCR	1 cut(s)	778
Eam1104I	CTCTTC	3 cut(s)	1113, 1137, 1284
EarI	CTCTTC	3 cut(s)	1113, 1137, 1284
Eco130I	CCWWGG	2 cut(s)	843, 1163
Eco24I	GRGCYC	1 cut(s)	8
Eco57I	CTGAAG	1 cut(s)	357
Eco88I	CYCGRG	2 cut(s)	428, 818
EcoO109I	RGGNCCY	1 cut(s)	5
EcoRI	GAATTC	1 cut(s)	274
EcoRII	CCWGG	4 cut(s)	931, 1135, 1424, 1471
EcoT14I	CCWWGG	2 cut(s)	843, 1163
EcoT22I	ATGCAT	1 cut(s)	1486
EcoT38I	GRGCYC	1 cut(s)	8
ErhI	CCWWGG	2 cut(s)	843, 1163
FaeI	CATG	6 cut(s)	83, 736, 969, 1064, 1118, 1409
FalI	AAGNNNNNCTT	2 cut(s)	840, 872
FaqI	GGGAC	2 cut(s)	319, 487
FatI	CATG	6 cut(s)	79, 732, 965, 1060, 1114, 1405
Fnu4HI	GCNGC	4 cut(s)	39, 464, 717, 1218
FokI	GGATG	6 cut(s)	77, 326, 341, 1208, 1241, 1250
FriOI	GRGCYC	1 cut(s)	8
Fsp4HI	GCNGC	4 cut(s)	39, 464, 717, 1218
FspBI	CTAG	3 cut(s)	771, 959, 1031
GluI	GCNGC	4 cut(s)	39, 464, 717, 1218
HaeIII	GGCC	2 cut(s)	6, 780
HapII	CCGG	3 cut(s)	1316, 1355, 1498
Hin1II	CATG	6 cut(s)	83, 736, 969, 1064, 1118, 1409
HincII	GTYRAC	1 cut(s)	423
HindII	GTYRAC	1 cut(s)	423
HinfI	GANTC	6 cut(s)	241, 344, 521, 901, 1409, 1415
HpaII	CCGG	3 cut(s)	1316, 1355, 1498
HphI	GGTGA	6 cut(s)	31, 263, 302, 344, 368, 761
Hpy166II	GTNNAC	2 cut(s)	423, 1391
Hpy188I	TCNGA	8 cut(s)	240, 526, 580, 827, 1098, 1324, 1363, 1414
Hpy8I	GTNNAC	2 cut(s)	423, 1391
HpyAV	CCTTC	2 cut(s)	242, 575
HpyCH4III	ACNGT	2 cut(s)	175, 351
HpyCH4IV	ACGT	3 cut(s)	84, 323, 448
HpyF10VI	GCNNNNNNNGC	2 cut(s)	472, 481
HpyF3I	CTNAG	4 cut(s)	60, 1056, 1095, 1329
HpySE526I	ACGT	3 cut(s)	84, 323, 448
Hsp92II	CATG	6 cut(s)	83, 736, 969, 1064, 1118, 1409
Kzo9I	GATC	3 cut(s)	751, 1156, 1255
LguI	GCTCTTC	2 cut(s)	1113, 1284
LmnI	GCTCC	2 cut(s)	35, 199
Lsp1109I	GCAGC	3 cut(s)	25, 703, 1204
LweI	GCATC	3 cut(s)	580, 668, 1061
MaeI	CTAG	3 cut(s)	771, 959, 1031
MaeII	ACGT	3 cut(s)	84, 323, 448
MaeIII	GTNAC	3 cut(s)	119, 332, 669
MalI	GATC	3 cut(s)	753, 1158, 1257
MboI	GATC	3 cut(s)	751, 1156, 1255
MhlI	GDGCHC	2 cut(s)	8, 369
MlsI	TGGCCA	1 cut(s)	780
MluCI	AATT	8 cut(s)	11, 274, 297, 439, 906, 1240, 1303, 1432
MluNI	TGGCCA	1 cut(s)	780
MlyI	GAGTC	1 cut(s)	895
MmeI	TCCRAC	3 cut(s)	142, 306, 1421
Mox20I	TGGCCA	1 cut(s)	780
Mph1103I	ATGCAT	1 cut(s)	1486
MroXI	GAANNNNTTC	1 cut(s)	852
MscI	TGGCCA	1 cut(s)	780
MseI	TTAA	4 cut(s)	468, 489, 1071, 1251
MslI	CAYNNNNRTG	1 cut(s)	886
Msp20I	TGGCCA	1 cut(s)	780
MspI	CCGG	3 cut(s)	1316, 1355, 1498
MspR9I	CCNGG	4 cut(s)	933, 1137, 1426, 1473
Mva1269I	GAATGC	1 cut(s)	199
MvaI	CCWGG	4 cut(s)	933, 1137, 1426, 1473
MwoI	GCNNNNNNNGC	2 cut(s)	472, 481
NdeII	GATC	3 cut(s)	751, 1156, 1255
NlaIII	CATG	6 cut(s)	83, 736, 969, 1064, 1118, 1409
NlaIV	GGNNCC	2 cut(s)	6, 1202
NmuCI	GTSAC	2 cut(s)	332, 669
NsiI	ATGCAT	1 cut(s)	1486
NspI	RCATGY	2 cut(s)	736, 1064
PaeI	GCATGC	1 cut(s)	736
PaeR7I	CTCGAG	1 cut(s)	818
PagI	TCATGA	3 cut(s)	79, 1114, 1405
PciSI	GCTCTTC	2 cut(s)	1113, 1284
PctI	GAATGC	1 cut(s)	199
PdmI	GAANNNNTTC	1 cut(s)	852
PfeI	GAWTC	5 cut(s)	241, 344, 521, 1409, 1415
PflFI	GACNNNGTC	2 cut(s)	86, 914
PkrI	GCNGC	4 cut(s)	40, 465, 718, 1219
PleI	GAGTC	1 cut(s)	895
PpsI	GAGTC	1 cut(s)	895
Psp1406I	AACGTT	1 cut(s)	323
Psp6I	CCWGG	4 cut(s)	931, 1135, 1424, 1471
PspGI	CCWGG	4 cut(s)	931, 1135, 1424, 1471
PspN4I	GGNNCC	2 cut(s)	6, 1202
PspOMI	GGGCCC	1 cut(s)	4
PspPI	GGNCC	2 cut(s)	4, 5
PsrI	GAACNNNNNNTAC	2 cut(s)	202, 234
PstI	CTGCAG	1 cut(s)	486
PstNI	CAGNNNCTG	1 cut(s)	1328
PsyI	GACNNNGTC	2 cut(s)	86, 914
RsaI	GTAC	5 cut(s)	220, 876, 963, 1179, 1392
RsaNI	GTAC	5 cut(s)	219, 875, 962, 1178, 1391
RseI	CAYNNNNRTG	1 cut(s)	886
SapI	GCTCTTC	2 cut(s)	1113, 1284
SaqAI	TTAA	4 cut(s)	468, 489, 1071, 1251
SatI	GCNGC	4 cut(s)	39, 464, 717, 1218
Sau3AI	GATC	3 cut(s)	751, 1156, 1255
Sau96I	GGNCC	2 cut(s)	4, 5
SchI	GAGTC	1 cut(s)	895
ScrFI	CCNGG	4 cut(s)	933, 1137, 1426, 1473
SduI	GDGCHC	2 cut(s)	8, 369
SfaNI	GCATC	3 cut(s)	580, 668, 1061
SfcI	CTRYAG	1 cut(s)	482
Sfr274I	CTCGAG	1 cut(s)	818
SlaI	CTCGAG	1 cut(s)	818
SmiMI	CAYNNNNRTG	1 cut(s)	886
SmlI	CTYRAG	1 cut(s)	818
SmoI	CTYRAG	1 cut(s)	818
SpeI	ACTAGT	2 cut(s)	770, 1030
SphI	GCATGC	1 cut(s)	736
Sse9I	AATT	8 cut(s)	11, 274, 297, 439, 906, 1240, 1303, 1432
SsiI	CCGC	2 cut(s)	197, 463
SspMI	CTAG	3 cut(s)	771, 959, 1031
StyD4I	CCNGG	4 cut(s)	931, 1135, 1424, 1471
StyI	CCWWGG	2 cut(s)	843, 1163
TaaI	ACNGT	2 cut(s)	175, 351
TaiI	ACGT	3 cut(s)	87, 326, 451
TaqI	TCGA	5 cut(s)	278, 819, 904, 977, 1456
TasI	AATT	8 cut(s)	11, 274, 297, 439, 906, 1240, 1303, 1432
TatI	WGTACW	1 cut(s)	1177
TauI	GCSGC	1 cut(s)	466
TfiI	GAWTC	5 cut(s)	241, 344, 521, 1409, 1415
Tru1I	TTAA	4 cut(s)	468, 489, 1071, 1251
Tru9I	TTAA	4 cut(s)	468, 489, 1071, 1251
TscAI	CASTG	2 cut(s)	1054, 1393
TseFI	GTSAC	2 cut(s)	332, 669
TseI	GCWGC	3 cut(s)	38, 716, 1217
Tsp45I	GTSAC	2 cut(s)	332, 669
TspDTI	ATGAA	3 cut(s)	629, 1131, 1422
TspGWI	ACGGA	1 cut(s)	1427
TspRI	CASTG	2 cut(s)	1054, 1393
Tth111I	GACNNNGTC	2 cut(s)	86, 914
XapI	RAATTY	2 cut(s)	274, 439
XceI	RCATGY	2 cut(s)	736, 1064
XhoI	CTCGAG	1 cut(s)	818
XmnI	GAANNNNTTC	1 cut(s)	852
XspI	CTAG	3 cut(s)	771, 959, 1031
Zsp2I	ATGCAT	1 cut(s)	1486

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.