RchiOBHm_Chr1g0347491

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0006015
Physical Location & Seq
Forward (+)
40091960 .. 40097612
5653 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ57359

Sequence Viewer

Length: 1416 bp
ATGGGCCCTGAATTGGAGCTGAAACCAAAGTCAGAAGCTGCAATGGAAGTTTCAGCTGTAAAGGAGACTGGTCTAATTCATATAGAGCCAGAAGAGAAGATTATGCCTTGTGTGAGTAACTACAAAGATAATATTTTTAACATGGAAGCATCATTTGCGGAACAAGCTACTACATCAAATAGAAGTGAGAATCAGGAGATAAATATTACCGATTGTGGCAGTCCGAATGACGTTCGGATGGTTGAAAATGAATGCCAGGACTTGACAGAGAGCTCGAGTTCTTTCGGTAATACAGTATCTGGGACAGAGAATGGTTTGATGTTGGATGGTGGTGATGAAGTTGAATCACAGTATTGTGAAAATCCATCGGTGTCATTATATGATGGATATTCTGATGCATTTCATACCAGGAAGAAAAAGTTGACTGGTCATTGGAGGAAATTTATACGTCCTCTTATGTGGCGCTGTAAATGGCTCGAACTGCAGATTAAGGAGCTTCAGTCCCAGACCCTGAAATATGATGCGGAACTTGCAGAATATGATAAAGCAAAGCAGTTTGAATTTGGAGGTTACACAGCTGAAGGTTTTGATGGAAAGTCAATACCATTTTCAAGTCAAATTCAAAGAAACAAATTCATGAAAAGGAAGAAAAGAAAGAGAATTGAAGATACTACTGATATAGTGTCATTTACGTCAAACCATAAACTGTTTTCCTATTATGAAAATAAAAATTCTGGTGCTAATGGTGGTTCCATGGAAGAGGATTGTGGTAATTTAGGTAAAAGTAGTCATGGCATAAATGAGTTTGACATTGAGTTCAGAGATGGTGATAGTACCTTGGAAGATACTCTTCGGAAGATTGAAGTGGTACATTCACAAGTCTGCCGGTTAAAGACCCGAATTGACAATGTGGTCAAGGAAAATCCCGCATTGTTTGGCTTTGCTCAAAGTCCTGCTCTTGAAAATGGGAATGATTCACTAGCTGAAACTCTACCAAATGCATTTCAGCATAGTTCTGAGTGTAACATGGGACCTTTACTTTTGCCTGGGAGTGCAGTTTCAAGTCATGAAGGGTTAACCGCTCTCCCTGGTATGATTGGGAACACAGATCAGCCTTGGCTTGGCACTGAACAGGAAAATGCCGAGGATGGATACCTTGTACCTAATGCAGCTGTCAAGAAAGAGCAACATGATTTTGAAAACAATAAAGATCAGGTCATAGAGCAGCCTCTCCTATCGAGTGCACAGCAGAAAACTAATTTCTCAGTTCCAGCTTCAAAAACTGTGCCAAAAAAATCCAGCTTACCTAATGCAACTCAACAACCCGATTCCACTACGAGGACTGAATTCCCTTGGAACACAAGAAATCGTGGGAAGCGTAAACCTGGTTCGTACAGGTGGAGCCGGAAATCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

471

Amino Acids

52.81

Weight (kDa)

5.32

Isoelectric Point (pI)

52.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 911
AccBSI CCGCTC 1 cut(s) 1082
AciI CCGC 4 cut(s) 158, 524, 927, 1080
AcsI RAATTY 6 cut(s) 440, 560, 618, 632, 730, 1346
AcuI CTGAAG 2 cut(s) 482, 600
AfaI GTAC 4 cut(s) 835, 870, 1161, 1394
AfiI CCNNNNNNNGG 3 cut(s) 13, 1121, 1338
AjnI CCWGG 5 cut(s) 255, 407, 1045, 1087, 1384
Alw21I GWGCWC 2 cut(s) 275, 1246
Alw26I GTCTC 1 cut(s) 59
Alw44I GTGCAC 1 cut(s) 1242
AlwNI CAGNNNCTG 3 cut(s) 38, 299, 511
Ama87I CYCGRG 1 cut(s) 274
AoxI GGCC 1 cut(s) 4
ApaI GGGCCC 1 cut(s) 8
ApaLI GTGCAC 1 cut(s) 1242
ApeKI GCWGC 3 cut(s) 38, 1169, 1225
ApoI RAATTY 6 cut(s) 440, 560, 618, 632, 730, 1346
AspLEI GCGC 1 cut(s) 465
AspS9I GGNCC 3 cut(s) 4, 5, 1031
AsuHPI GGTGA 2 cut(s) 344, 839
AvaI CYCGRG 1 cut(s) 274
AvaII GGWCC 1 cut(s) 1031
BaeGI GKGCMC 2 cut(s) 8, 1246
BanII GRGCYC 2 cut(s) 8, 275
Bbv12I GWGCWC 2 cut(s) 275, 1246
BbvI GCAGC 3 cut(s) 25, 1181, 1237
BccI CCATC 7 cut(s) 232, 320, 373, 377, 584, 818, 1142
BciT130I CCWGG 5 cut(s) 257, 409, 1047, 1089, 1386
BciVI GTATCC 1 cut(s) 1145
BcoDI GTCTC 1 cut(s) 59
BfaI CTAG 2 cut(s) 980, 1414
BfmI CTRYAG 1 cut(s) 482
BfoI RGCGCY 1 cut(s) 466
BfuI GTATCC 1 cut(s) 1145
BisI GCNGC 3 cut(s) 39, 1170, 1226
BlsI GCNGC 3 cut(s) 40, 1171, 1227
Bme1390I CCNGG 5 cut(s) 257, 409, 1047, 1089, 1386
Bme18I GGWCC 1 cut(s) 1031
BmeT110I CYCGRG 1 cut(s) 274
BmgT120I GGNCC 3 cut(s) 4, 5, 1031
BmiI GGNNCC 4 cut(s) 6, 751, 1032, 1403
BmrFI CCNGG 5 cut(s) 257, 409, 1047, 1089, 1386
BmsI GCATC 3 cut(s) 158, 385, 511
BsaJI CCNNGG 7 cut(s) 753, 837, 1046, 1087, 1115, 1143, 1352
BsaXI ACNNNNNCTCC 2 cut(s) 485, 515
Bsc4I CCNNNNNNNGG 3 cut(s) 13, 1121, 1338
Bse118I RCCGGY 1 cut(s) 885
Bse1I ACTGG 2 cut(s) 73, 430
Bse3DI GCAATG 1 cut(s) 48
BseBI CCWGG 5 cut(s) 257, 409, 1047, 1089, 1386
BseDI CCNNGG 7 cut(s) 753, 837, 1046, 1087, 1115, 1143, 1352
BseGI GGATG 3 cut(s) 243, 331, 1153
BseLI CCNNNNNNNGG 3 cut(s) 13, 1121, 1338
BseMI GCAATG 1 cut(s) 48
BseMII CTCAG 2 cut(s) 1008, 1278
BseNI ACTGG 2 cut(s) 73, 430
BseSI GKGCMC 2 cut(s) 8, 1246
BseXI GCAGC 3 cut(s) 25, 1181, 1237
BsgI GTGCAG 1 cut(s) 1074
BshFI GGCC 1 cut(s) 6
BsiHKAI GWGCWC 2 cut(s) 275, 1246
BsiHKCI CYCGRG 1 cut(s) 274
BsiSI CCGG 2 cut(s) 886, 1405
BslFI GGGAC 3 cut(s) 316, 487, 1044
BslI CCNNNNNNNGG 3 cut(s) 13, 1121, 1338
BsmAI GTCTC 1 cut(s) 59
BsmFI GGGAC 3 cut(s) 316, 487, 1044
BsmI GAATGC 1 cut(s) 257
BsnI GGCC 1 cut(s) 6
BsoBI CYCGRG 1 cut(s) 274
Bsp120I GGGCCC 1 cut(s) 4
Bsp1286I GDGCHC 3 cut(s) 8, 275, 1246
Bsp143I GATC 2 cut(s) 1108, 1210
Bsp19I CCATGG 1 cut(s) 753
BspACI CCGC 4 cut(s) 158, 524, 927, 1080
BspANI GGCC 1 cut(s) 6
BspCNI CTCAG 2 cut(s) 1009, 1277
BspHI TCATGA 2 cut(s) 636, 1066
BspLI GGNNCC 4 cut(s) 6, 751, 1032, 1403
BspMAI CTGCAG 1 cut(s) 486
BsrBI CCGCTC 1 cut(s) 1082
BsrDI GCAATG 1 cut(s) 48
BsrFI RCCGGY 1 cut(s) 885
BsrI ACTGG 2 cut(s) 73, 430
BssAI RCCGGY 1 cut(s) 885
BssECI CCNNGG 7 cut(s) 753, 837, 1046, 1087, 1115, 1143, 1352
BssMI GATC 2 cut(s) 1108, 1210
BssT1I CCWWGG 4 cut(s) 753, 837, 1115, 1352
Bst2UI CCWGG 5 cut(s) 257, 409, 1047, 1089, 1386
Bst4CI ACNGT 4 cut(s) 295, 351, 708, 1285
Bst6I CTCTTC 3 cut(s) 87, 753, 855
BstAPI GCANNNNNTGC 1 cut(s) 155
BstDEI CTNAG 2 cut(s) 1017, 1264
BstDSI CCRYGG 1 cut(s) 753
BstF5I GGATG 3 cut(s) 243, 331, 1153
BstH2I RGCGCY 1 cut(s) 466
BstHHI GCGC 1 cut(s) 465
BstKTI GATC 2 cut(s) 1111, 1213
BstMAI GTCTC 1 cut(s) 59
BstMBI GATC 2 cut(s) 1108, 1210
BstMWI GCNNNNNNNGC 4 cut(s) 155, 164, 481, 530
BstNI CCWGG 5 cut(s) 257, 409, 1047, 1089, 1386
BstSCI CCNGG 5 cut(s) 255, 407, 1045, 1087, 1384
BstSFI CTRYAG 1 cut(s) 482
BstSLI GKGCMC 2 cut(s) 8, 1246
BstV1I GCAGC 3 cut(s) 25, 1181, 1237
BsuI GTATCC 1 cut(s) 1145
BsuRI GGCC 1 cut(s) 6
BtgI CCRYGG 1 cut(s) 753
BtsCI GGATG 3 cut(s) 243, 331, 1153
BtsIMutI CAGTG 1 cut(s) 1125
CaiI CAGNNNCTG 3 cut(s) 38, 299, 511
CciI TCATGA 2 cut(s) 636, 1066
CfoI GCGC 1 cut(s) 465
Cfr10I RCCGGY 1 cut(s) 885
Cfr13I GGNCC 3 cut(s) 4, 5, 1031
CsiI ACCWGGT 1 cut(s) 1384
Csp6I GTAC 4 cut(s) 834, 869, 1160, 1393
CviAII CATG 7 cut(s) 142, 637, 754, 791, 1027, 1067, 1190
CviQI GTAC 4 cut(s) 834, 869, 1160, 1393
DdeI CTNAG 2 cut(s) 1017, 1264
DpnI GATC 2 cut(s) 1110, 1212
DpnII GATC 2 cut(s) 1108, 1210
DrdI GACNNNNNNGTC 1 cut(s) 911
DseDI GACNNNNNNGTC 1 cut(s) 911
Eam1104I CTCTTC 3 cut(s) 87, 753, 855
EarI CTCTTC 3 cut(s) 87, 753, 855
Ecl136II GAGCTC 1 cut(s) 273
Eco130I CCWWGG 4 cut(s) 753, 837, 1115, 1352
Eco24I GRGCYC 2 cut(s) 8, 275
Eco47I GGWCC 1 cut(s) 1031
Eco53kI GAGCTC 1 cut(s) 273
Eco57I CTGAAG 2 cut(s) 482, 600
Eco88I CYCGRG 1 cut(s) 274
EcoICRI GAGCTC 1 cut(s) 273
EcoO109I RGGNCCY 2 cut(s) 5, 1031
EcoRI GAATTC 1 cut(s) 1346
EcoRII CCWGG 5 cut(s) 255, 407, 1045, 1087, 1384
EcoT14I CCWWGG 4 cut(s) 753, 837, 1115, 1352
EcoT22I ATGCAT 2 cut(s) 400, 1003
EcoT38I GRGCYC 2 cut(s) 8, 275
ErhI CCWWGG 4 cut(s) 753, 837, 1115, 1352
FaeI CATG 7 cut(s) 145, 640, 757, 794, 1030, 1070, 1193
FalI AAGNNNNNCTT 2 cut(s) 834, 866
FaqI GGGAC 3 cut(s) 316, 487, 1044
FatI CATG 7 cut(s) 141, 636, 753, 790, 1026, 1066, 1189
FauI CCCGC 1 cut(s) 934
Fnu4HI GCNGC 3 cut(s) 39, 1170, 1226
FokI GGATG 3 cut(s) 250, 338, 1160
FriOI GRGCYC 2 cut(s) 8, 275
Fsp4HI GCNGC 3 cut(s) 39, 1170, 1226
FspBI CTAG 2 cut(s) 980, 1414
GlaI GCGC 1 cut(s) 464
GluI GCNGC 3 cut(s) 39, 1170, 1226
HaeII RGCGCY 1 cut(s) 466
HaeIII GGCC 1 cut(s) 6
HapII CCGG 2 cut(s) 886, 1405
HhaI GCGC 1 cut(s) 465
Hin1II CATG 7 cut(s) 145, 640, 757, 794, 1030, 1070, 1193
Hin6I GCGC 1 cut(s) 463
HinP1I GCGC 1 cut(s) 463
HincII GTYRAC 2 cut(s) 423, 1077
HindII GTYRAC 2 cut(s) 423, 1077
HinfI GANTC 4 cut(s) 190, 344, 974, 1328
HpaI GTTAAC 1 cut(s) 1077
HpaII CCGG 2 cut(s) 886, 1405
HphI GGTGA 2 cut(s) 344, 839
Hpy166II GTNNAC 4 cut(s) 423, 1077, 1244, 1382
Hpy188I TCNGA 7 cut(s) 34, 225, 237, 394, 821, 855, 1018
Hpy188III TCNNGA 5 cut(s) 194, 637, 959, 1067, 1177
Hpy8I GTNNAC 4 cut(s) 423, 1077, 1244, 1382
HpyAV CCTTC 2 cut(s) 575, 1064
HpyCH4III ACNGT 4 cut(s) 295, 351, 708, 1285
HpyCH4IV ACGT 3 cut(s) 231, 448, 692
HpyCH4V TGCA 9 cut(s) 41, 398, 484, 533, 1001, 1055, 1169, 1244, 1313
HpyF10VI GCNNNNNNNGC 4 cut(s) 155, 164, 481, 530
HpyF3I CTNAG 2 cut(s) 1017, 1264
HpySE526I ACGT 3 cut(s) 231, 448, 692
Hsp92II CATG 7 cut(s) 145, 640, 757, 794, 1030, 1070, 1193
HspAI GCGC 1 cut(s) 463
KspAI GTTAAC 1 cut(s) 1077
Kzo9I GATC 2 cut(s) 1108, 1210
LmnI GCTCC 3 cut(s) 16, 493, 1401
Lsp1109I GCAGC 3 cut(s) 25, 1181, 1237
LweI GCATC 3 cut(s) 158, 385, 511
MabI ACCWGGT 1 cut(s) 1384
MaeI CTAG 2 cut(s) 980, 1414
MaeII ACGT 3 cut(s) 231, 448, 692
MaeIII GTNAC 3 cut(s) 116, 569, 1022
MalI GATC 2 cut(s) 1110, 1212
MbiI CCGCTC 1 cut(s) 1082
MboI GATC 2 cut(s) 1108, 1210
MboII GAAGA 9 cut(s) 104, 109, 424, 658, 677, 770, 842, 854, 868
MhlI GDGCHC 3 cut(s) 8, 275, 1246
MmeI TCCRAC 1 cut(s) 303
MnlI CCTC 7 cut(s) 429, 462, 560, 754, 1138, 1239, 1332
Mph1103I ATGCAT 2 cut(s) 400, 1003
MseI TTAA 4 cut(s) 138, 489, 890, 1076
MspA1I CMGCKG 3 cut(s) 56, 578, 1172
MspI CCGG 2 cut(s) 886, 1405
MspR9I CCNGG 5 cut(s) 257, 409, 1047, 1089, 1386
Mva1269I GAATGC 1 cut(s) 257
MvaI CCWGG 5 cut(s) 257, 409, 1047, 1089, 1386
MwoI GCNNNNNNNGC 4 cut(s) 155, 164, 481, 530
NcoI CCATGG 1 cut(s) 753
NdeII GATC 2 cut(s) 1108, 1210
NlaIII CATG 7 cut(s) 145, 640, 757, 794, 1030, 1070, 1193
NlaIV GGNNCC 4 cut(s) 6, 751, 1032, 1403
NmeAIII GCCGAG 1 cut(s) 1168
NsiI ATGCAT 2 cut(s) 400, 1003
PaeR7I CTCGAG 1 cut(s) 274
PagI TCATGA 2 cut(s) 636, 1066
PcsI WCGNNNNNNNCGW 1 cut(s) 1375
PctI GAATGC 1 cut(s) 257
PfeI GAWTC 4 cut(s) 190, 344, 974, 1328
PkrI GCNGC 3 cut(s) 40, 1171, 1227
PpuMI RGGWCCY 1 cut(s) 1031
Psp124BI GAGCTC 1 cut(s) 275
Psp5II RGGWCCY 1 cut(s) 1031
Psp6I CCWGG 5 cut(s) 255, 407, 1045, 1087, 1384
PspGI CCWGG 5 cut(s) 255, 407, 1045, 1087, 1384
PspN4I GGNNCC 4 cut(s) 6, 751, 1032, 1403
PspOMI GGGCCC 1 cut(s) 4
PspPI GGNCC 3 cut(s) 4, 5, 1031
PspPPI RGGWCCY 1 cut(s) 1031
PspXI VCTCGAGB 1 cut(s) 274
PsrI GAACNNNNNNTAC 2 cut(s) 1372, 1404
PstI CTGCAG 1 cut(s) 486
PstNI CAGNNNCTG 3 cut(s) 38, 299, 511
PvuII CAGCTG 3 cut(s) 56, 578, 1172
RsaI GTAC 4 cut(s) 835, 870, 1161, 1394
RsaNI GTAC 4 cut(s) 834, 869, 1160, 1393
SacI GAGCTC 1 cut(s) 275
SaqAI TTAA 4 cut(s) 138, 489, 890, 1076
SatI GCNGC 3 cut(s) 39, 1170, 1226
Sau3AI GATC 2 cut(s) 1108, 1210
Sau96I GGNCC 3 cut(s) 4, 5, 1031
ScrFI CCNGG 5 cut(s) 257, 409, 1047, 1089, 1386
SduI GDGCHC 3 cut(s) 8, 275, 1246
SexAI ACCWGGT 1 cut(s) 1384
SfaNI GCATC 3 cut(s) 158, 385, 511
SfcI CTRYAG 1 cut(s) 482
Sfr274I CTCGAG 1 cut(s) 274
SinI GGWCC 1 cut(s) 1031
SlaI CTCGAG 1 cut(s) 274
SmlI CTYRAG 1 cut(s) 274
SmoI CTYRAG 1 cut(s) 274
SsiI CCGC 4 cut(s) 158, 524, 927, 1080
SspI AATATT 2 cut(s) 133, 205
SspMI CTAG 2 cut(s) 980, 1414
SstI GAGCTC 1 cut(s) 275
StyD4I CCNGG 5 cut(s) 255, 407, 1045, 1087, 1384
StyI CCWWGG 4 cut(s) 753, 837, 1115, 1352
TaaI ACNGT 4 cut(s) 295, 351, 708, 1285
TaiI ACGT 3 cut(s) 234, 451, 695
TaqI TCGA 3 cut(s) 275, 477, 1238
TfiI GAWTC 4 cut(s) 190, 344, 974, 1328
Tru1I TTAA 4 cut(s) 138, 489, 890, 1076
Tru9I TTAA 4 cut(s) 138, 489, 890, 1076
TscAI CASTG 1 cut(s) 1132
TseI GCWGC 3 cut(s) 38, 1169, 1225
TspDTI ATGAA 8 cut(s) 68, 264, 351, 392, 625, 653, 735, 1083
TspRI CASTG 1 cut(s) 1132
VneI GTGCAC 1 cut(s) 1242
VpaK11BI GGWCC 1 cut(s) 1031
XapI RAATTY 6 cut(s) 440, 560, 618, 632, 730, 1346
XhoI CTCGAG 1 cut(s) 274
XspI CTAG 2 cut(s) 980, 1414
Zsp2I ATGCAT 2 cut(s) 400, 1003
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.