Rorug01G0187100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0006015
Physical Location & Seq
Forward (+)
25874852 .. 25876317
1466 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0187100.1

Sequence Viewer

Length: 1257 bp
ATGCTTACCCTGAATCTCAACACTCCTTCCATCACTGTCACTTTCTCCAAATCCACCCATCACTACCCCATCAATGCCTCCCCCTCTTCTCTCCCCAACACAAGATTCCCCACCTCATCTGTTCTCCTCCACACACCCACCAAGCCTTTCACCAGAATCCATGCCCACCCATTTGGATTCTCTTCAAAACCCACTTCCCAGATCCATGGTTTGAACCCAAAGTTCCCATCTTTGTTCTCCTCCAAACCCAGATCCCAAACCCCAAAAGCTTCTTCTGCTTCAGAAGCCAACCCCAATGGAGATATTGAACCCACAGTTCCAAAGCCTAAAGTCACAACCGCCCAGCTTTCCTTGATCTTTGGGCTCTGGTACTTCCAGAACATTGTCTTCAATATCTACAACAAGAAGGCACTGAATGTTTTCCCATTCCCATGGCTTCTGGCTTCCTTTCAGCTCTTTGCCGGGTCCGTCTGGATGTTGATCCTCTGGTCTCTGAAGCTCCAGCCATGCCCGAAAATCTCGAAACCGTTCATTGTTGCTCTCCTTGGCCCTGCATTGTTCCACACCATAGGTCACATCTCGGCCTGCGTCTCATTCTCTAAGGTGGCTGTGTCCTTCACCCATGTCATCAAGTCTGCGGAGCCTGTCTTTTCGGTGGTGTTTTCGTCGTTCCTAGGGGAGACTTACCCCATACAGGTCTGGCTTTCGATTCTTCCTATTGTTATGGGTTGTTCTCTAGCTGCTGTTACTGAGGTGACATTCAATTTGCAAGGCCTGTGGGGGGCTTTAATTAGCAATGTGGGGTTTGTGTTGAGGAACATTTATTCGAAACGGAGCTTGCAGAGCTTTAAAGAAATAGATGGGTTGAATTTGTATGGTTGCATCAGTATAATTTCTCTGTTTTATTTGTTTCCTGTGGCGGTTTTGGTTGAAGGATCGCAATGGGTTCAAGGGTATCATAGAGCTTTAGCATCTGTGGGGGAACCATCCACATTTTACTTTTGGGTGTTGTTGTCCGGAGTGTTTTACCATCTGTATAACCAGTCGAGTTATCAGGCTCTTGATGAGATTAGCCCTTTGACATTCTCTGTTGGAAACACAATGAAGAGGGTGGTGGTGATTGTGTCTACTGTGTTGGTGTTCAGAAATCCAGTTAGACCTCTTAATGCACTTGGGTCCGCTGTGGCGATATTTGGGACATTCTTGTATTCTCAGGCAACAGCTAAGAAGAAAAAGGAAGCTGAAAAGAAGAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

418

Amino Acids

46.18

Weight (kDa)

9.81

Isoelectric Point (pI)

47.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPT PF03151 115 - 404 4.8e-115 Triose-phosphate Transporter family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 1127
AccIII TCCGGA 1 cut(s) 1016
AciI CCGC 4 cut(s) 339, 638, 920, 1179
AclWI GGATC 4 cut(s) 196, 246, 475, 943
AcsI RAATTY 1 cut(s) 868
AcuI CTGAAG 2 cut(s) 264, 515
AfaI GTAC 1 cut(s) 371
AfiI CCNNNNNNNGG 2 cut(s) 694, 781
AgsI TTSAA 8 cut(s) 186, 214, 308, 391, 763, 868, 932, 950
AjuI GAANNNNNNNTTGG 4 cut(s) 89, 121, 256, 288
Alw26I GTCTC 3 cut(s) 495, 595, 674
AlwI GGATC 4 cut(s) 196, 246, 475, 943
Aor13HI TCCGGA 1 cut(s) 1016
AoxI GGCC 3 cut(s) 547, 582, 772
ApeKI GCWGC 1 cut(s) 740
ApoI RAATTY 1 cut(s) 868
ArsI GACNNNNNNTTYG 2 cut(s) 748, 780
Asp700I GAANNNNTTC 2 cut(s) 419, 527
AspA2I CCTAGG 1 cut(s) 673
AspS9I GGNCC 3 cut(s) 465, 548, 1176
AsuC2I CCSGG 1 cut(s) 463
AsuHPI GGTGA 4 cut(s) 142, 610, 766, 1129
AsuII TTCGAA 1 cut(s) 827
AvaII GGWCC 2 cut(s) 465, 1176
AvrII CCTAGG 1 cut(s) 673
BanII GRGCYC 1 cut(s) 366
BbsI GAAGAC 1 cut(s) 379
BbvI GCAGC 1 cut(s) 727
BccI CCATC 7 cut(s) 38, 66, 77, 235, 854, 994, 1038
BcnI CCSGG 1 cut(s) 463
BcoDI GTCTC 3 cut(s) 495, 595, 674
BfaI CTAG 2 cut(s) 674, 737
BisI GCNGC 1 cut(s) 741
BlnI CCTAGG 1 cut(s) 673
BlsI GCNGC 1 cut(s) 742
Bme1390I CCNGG 1 cut(s) 463
Bme18I GGWCC 2 cut(s) 465, 1176
BmgT120I GGNCC 3 cut(s) 465, 548, 1176
BmiI GGNNCC 4 cut(s) 466, 642, 984, 1177
BmrFI CCNGG 1 cut(s) 463
BmsI GCATC 2 cut(s) 891, 980
BpiI GAAGAC 1 cut(s) 379
BpmI CTGGAG 1 cut(s) 485
Bpu14I TTCGAA 1 cut(s) 827
BpuMI CCSGG 1 cut(s) 463
BsaBI GATNNNNATC 1 cut(s) 479
BsaI GGTCTC 1 cut(s) 495
BsaJI CCNNGG 4 cut(s) 205, 431, 544, 673
BsaWI WCCGGW 1 cut(s) 1016
Bsc4I CCNNNNNNNGG 2 cut(s) 694, 781
Bse1I ACTGG 2 cut(s) 1042, 1151
Bse3DI GCAATG 2 cut(s) 802, 947
Bse8I GATNNNNATC 1 cut(s) 479
BseAI TCCGGA 1 cut(s) 1016
BseDI CCNNGG 4 cut(s) 205, 431, 544, 673
BseGI GGATG 2 cut(s) 480, 986
BseJI GATNNNNATC 1 cut(s) 479
BseLI CCNNNNNNNGG 2 cut(s) 694, 781
BseMI GCAATG 2 cut(s) 802, 947
BseMII CTCAG 2 cut(s) 741, 1226
BseNI ACTGG 2 cut(s) 1042, 1151
BseRI GAGGAG 2 cut(s) 116, 229
BseXI GCAGC 1 cut(s) 727
BseYI CCCAGC 1 cut(s) 342
BshFI GGCC 3 cut(s) 549, 584, 774
BsiSI CCGG 2 cut(s) 462, 1017
BslFI GGGAC 1 cut(s) 1210
BslI CCNNNNNNNGG 2 cut(s) 694, 781
BsmAI GTCTC 3 cut(s) 495, 595, 674
BsmBI CGTCTC 1 cut(s) 595
BsmFI GGGAC 1 cut(s) 1210
BsnI GGCC 3 cut(s) 549, 584, 774
Bso31I GGTCTC 1 cut(s) 495
Bsp119I TTCGAA 1 cut(s) 827
Bsp1286I GDGCHC 1 cut(s) 366
Bsp13I TCCGGA 1 cut(s) 1016
Bsp143I GATC 5 cut(s) 201, 251, 354, 480, 935
Bsp19I CCATGG 2 cut(s) 205, 431
BspACI CCGC 4 cut(s) 339, 638, 920, 1179
BspANI GGCC 3 cut(s) 549, 584, 774
BspCNI CTCAG 2 cut(s) 742, 1225
BspEI TCCGGA 1 cut(s) 1016
BspLI GGNNCC 4 cut(s) 466, 642, 984, 1177
BspPI GGATC 4 cut(s) 196, 246, 475, 943
BspT104I TTCGAA 1 cut(s) 827
BspTNI GGTCTC 1 cut(s) 495
BsrDI GCAATG 2 cut(s) 802, 947
BsrI ACTGG 2 cut(s) 1042, 1151
BssECI CCNNGG 4 cut(s) 205, 431, 544, 673
BssMI GATC 5 cut(s) 201, 251, 354, 480, 935
BssT1I CCWWGG 4 cut(s) 205, 431, 544, 673
Bst4CI ACNGT 4 cut(s) 37, 316, 528, 1132
Bst6I CTCTTC 3 cut(s) 91, 187, 1100
BstBI TTCGAA 1 cut(s) 827
BstC8I GCNNGC 2 cut(s) 586, 839
BstDEI CTNAG 4 cut(s) 600, 750, 1212, 1224
BstDSI CCRYGG 2 cut(s) 205, 431
BstF5I GGATG 2 cut(s) 480, 986
BstKTI GATC 5 cut(s) 204, 254, 357, 483, 938
BstMAI GTCTC 3 cut(s) 495, 595, 674
BstMBI GATC 5 cut(s) 201, 251, 354, 480, 935
BstMWI GCNNNNNNNGC 3 cut(s) 275, 284, 843
BstSCI CCNGG 1 cut(s) 461
BstV1I GCAGC 1 cut(s) 727
BstV2I GAAGAC 1 cut(s) 379
BstX2I RGATCY 2 cut(s) 201, 251
BstXI CCANNNNNNTGG 3 cut(s) 173, 206, 432
BstYI RGATCY 2 cut(s) 201, 251
BsuRI GGCC 3 cut(s) 549, 584, 774
BtgI CCRYGG 2 cut(s) 205, 431
BtsCI GGATG 2 cut(s) 480, 986
BtsIMutI CAGTG 2 cut(s) 33, 410
Cac8I GCNNGC 2 cut(s) 586, 839
Cfr13I GGNCC 3 cut(s) 465, 548, 1176
CseI GACGC 1 cut(s) 577
Csp6I GTAC 1 cut(s) 370
CspCI CAANNNNNGTGG 2 cut(s) 758, 793
CviAII CATG 5 cut(s) 161, 206, 432, 507, 623
CviQI GTAC 1 cut(s) 370
DdeI CTNAG 4 cut(s) 600, 750, 1212, 1224
DpnI GATC 5 cut(s) 203, 253, 356, 482, 937
DpnII GATC 5 cut(s) 201, 251, 354, 480, 935
DraI TTTAAA 1 cut(s) 850
Eam1104I CTCTTC 3 cut(s) 91, 187, 1100
EarI CTCTTC 3 cut(s) 91, 187, 1100
Eco130I CCWWGG 4 cut(s) 205, 431, 544, 673
Eco147I AGGCCT 1 cut(s) 774
Eco24I GRGCYC 1 cut(s) 366
Eco31I GGTCTC 1 cut(s) 495
Eco47I GGWCC 2 cut(s) 465, 1176
Eco57I CTGAAG 2 cut(s) 264, 515
EcoT14I CCWWGG 4 cut(s) 205, 431, 544, 673
EcoT38I GRGCYC 1 cut(s) 366
ErhI CCWWGG 4 cut(s) 205, 431, 544, 673
Esp3I CGTCTC 1 cut(s) 595
FaeI CATG 5 cut(s) 164, 209, 435, 510, 626
FaqI GGGAC 1 cut(s) 1210
FatI CATG 5 cut(s) 160, 205, 431, 506, 622
FblI GTMKAC 1 cut(s) 1127
Fnu4HI GCNGC 1 cut(s) 741
FokI GGATG 2 cut(s) 487, 973
FriOI GRGCYC 1 cut(s) 366
Fsp4HI GCNGC 1 cut(s) 741
FspBI CTAG 2 cut(s) 674, 737
GluI GCNGC 1 cut(s) 741
GsaI CCCAGC 1 cut(s) 346
GsuI CTGGAG 1 cut(s) 485
HaeIII GGCC 3 cut(s) 549, 584, 774
HapII CCGG 2 cut(s) 462, 1017
HgaI GACGC 1 cut(s) 577
Hin1II CATG 5 cut(s) 164, 209, 435, 510, 626
HindIII AAGCTT 1 cut(s) 267
HinfI GANTC 5 cut(s) 13, 105, 156, 177, 709
HpaII CCGG 2 cut(s) 462, 1017
HphI GGTGA 4 cut(s) 142, 610, 766, 1129
Hpy166II GTNNAC 1 cut(s) 1128
Hpy188I TCNGA 3 cut(s) 283, 495, 1145
Hpy188III TCNNGA 5 cut(s) 376, 472, 520, 1017, 1061
Hpy8I GTNNAC 1 cut(s) 1128
Hpy99I CGWCG 1 cut(s) 670
HpyAV CCTTC 4 cut(s) 36, 400, 625, 926
HpyCH4III ACNGT 4 cut(s) 37, 316, 528, 1132
HpyCH4V TGCA 5 cut(s) 554, 769, 841, 882, 1169
HpyF10VI GCNNNNNNNGC 3 cut(s) 275, 284, 843
HpyF3I CTNAG 4 cut(s) 600, 750, 1212, 1224
Hsp92II CATG 5 cut(s) 164, 209, 435, 510, 626
Kpn2I TCCGGA 1 cut(s) 1016
Kzo9I GATC 5 cut(s) 201, 251, 354, 480, 935
LmnI GCTCC 3 cut(s) 504, 640, 834
Lsp1109I GCAGC 1 cut(s) 727
LweI GCATC 2 cut(s) 891, 980
MaeI CTAG 2 cut(s) 674, 737
MaeIII GTNAC 5 cut(s) 37, 331, 572, 745, 754
MalI GATC 5 cut(s) 203, 253, 356, 482, 937
MboI GATC 5 cut(s) 201, 251, 354, 480, 935
MboII GAAGA 7 cut(s) 78, 174, 264, 379, 704, 1117, 1240
MflI RGATCY 2 cut(s) 201, 251
MhlI GDGCHC 1 cut(s) 366
MluCI AATT 5 cut(s) 763, 789, 868, 891, 1252
MmeI TCCRAC 1 cut(s) 1072
MroI TCCGGA 1 cut(s) 1016
MroXI GAANNNNTTC 2 cut(s) 419, 527
MseI TTAA 3 cut(s) 788, 849, 1164
MslI CAYNNNNRTG 1 cut(s) 430
MspA1I CMGCKG 1 cut(s) 1181
MspI CCGG 2 cut(s) 462, 1017
MspR9I CCNGG 1 cut(s) 463
MwoI GCNNNNNNNGC 3 cut(s) 275, 284, 843
NciI CCSGG 1 cut(s) 463
NcoI CCATGG 2 cut(s) 205, 431
NdeII GATC 5 cut(s) 201, 251, 354, 480, 935
NlaIII CATG 5 cut(s) 164, 209, 435, 510, 626
NlaIV GGNNCC 4 cut(s) 466, 642, 984, 1177
NmeAIII GCCGAG 1 cut(s) 560
NmuCI GTSAC 4 cut(s) 37, 331, 572, 754
NspV TTCGAA 1 cut(s) 827
PceI AGGCCT 1 cut(s) 774
PdmI GAANNNNTTC 2 cut(s) 419, 527
PfeI GAWTC 5 cut(s) 13, 105, 156, 177, 709
PkrI GCNGC 1 cut(s) 742
PspFI CCCAGC 1 cut(s) 342
PspN4I GGNNCC 4 cut(s) 466, 642, 984, 1177
PspPI GGNCC 3 cut(s) 465, 548, 1176
PsuI RGATCY 2 cut(s) 201, 251
RsaI GTAC 1 cut(s) 371
RsaNI GTAC 1 cut(s) 370
RseI CAYNNNNRTG 1 cut(s) 430
SaqAI TTAA 3 cut(s) 788, 849, 1164
SatI GCNGC 1 cut(s) 741
Sau3AI GATC 5 cut(s) 201, 251, 354, 480, 935
Sau96I GGNCC 3 cut(s) 465, 548, 1176
ScrFI CCNGG 1 cut(s) 463
SduI GDGCHC 1 cut(s) 366
SfaNI GCATC 2 cut(s) 891, 980
SfuI TTCGAA 1 cut(s) 827
SinI GGWCC 2 cut(s) 465, 1176
SmiMI CAYNNNNRTG 1 cut(s) 430
Sse9I AATT 5 cut(s) 763, 789, 868, 891, 1252
SseBI AGGCCT 1 cut(s) 774
SsiI CCGC 4 cut(s) 339, 638, 920, 1179
SspMI CTAG 2 cut(s) 674, 737
StuI AGGCCT 1 cut(s) 774
StyD4I CCNGG 1 cut(s) 461
StyI CCWWGG 4 cut(s) 205, 431, 544, 673
TaaI ACNGT 4 cut(s) 37, 316, 528, 1132
TaqI TCGA 4 cut(s) 521, 707, 827, 1046
TasI AATT 5 cut(s) 763, 789, 868, 891, 1252
TfiI GAWTC 5 cut(s) 13, 105, 156, 177, 709
Tru1I TTAA 3 cut(s) 788, 849, 1164
Tru9I TTAA 3 cut(s) 788, 849, 1164
TscAI CASTG 2 cut(s) 40, 417
TseFI GTSAC 4 cut(s) 37, 331, 572, 754
TseI GCWGC 1 cut(s) 740
Tsp45I GTSAC 4 cut(s) 37, 331, 572, 754
TspDTI ATGAA 2 cut(s) 520, 1118
TspGWI ACGGA 2 cut(s) 457, 847
TspRI CASTG 2 cut(s) 40, 417
VpaK11BI GGWCC 2 cut(s) 465, 1176
XapI RAATTY 1 cut(s) 868
XmaJI CCTAGG 1 cut(s) 673
XmiI GTMKAC 1 cut(s) 1127
XmnI GAANNNNTTC 2 cut(s) 419, 527
XspI CTAG 2 cut(s) 674, 737
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.