Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0006015

Physical Location & Seq

Genomic Coordinates Forward (+)

27189374 .. 27195678

Gene Structure 6305 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG170300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1416 bp

ATGGGCCCTGAATTGGAGCTGAAACCAAGGTCAGAAGCTGCAATGGAAGTTTCAGCTGTAAAGGAGACTGGTGTAATTCATATAGAACCAGAAGAAAAGATTATGCCTTGTGTGAGTAACTACAAAGATAATATTTTTAACATGGAAGCGTCATTTGCGGAACAAGCTACTACATCAAATAGAAGTGAGAATCAGGAGATAAATATTACTGATTGTGCCAGTCCGAGTGACGTTCGGATGGTTGAAAATGAATGCCAGGACTTGACAGAGAGCTCGAGTTCTTTCGGTAATACAGTATCTGGGACAGAGAATGGTTTGATGTTGGATGGTGGTGATGAAGTTGAATCACGGTATTGTGAAAATCCATCGGTGTCATTATATGATGGATATTCTGATACATTTCATACAAGGAAGAAAAAGTTGACTGGTCATTGGAGGAAATTTATACGTCCTCTTATGTGGCGCTGTAAATGGCTCGAACTGCAGATTAAGGAACTTCAGTCCCAGACCCTGAAATATGATGCGGAACTTGCAGAATATGATAAACTAAAGCAGTTTGAATTTGGAGGTTACACAGCTGAAGGTTTTGATGGAAAGTCAATACGATTTTCAAGTCAAATTCAAAGAAACAAATTCATGAAAAGGAAGAAAAGAAAGAGAGTTGAAGATACTACTGATATAGTGTCATTTACGTCAAACCATAAACTGTTTTCCTATTATGAAAATAAAAAGTCTGGTGCTAATGGTGGTTCCATGGAAGAGGATTGCGGTAATTTAGGTAAAAGTAGTCACGGCATAAATGAGTTCGAGATTGAGTTCAGAGATGGTGATAGTACCTTGGAAGATACTCTTCGGAAGATTGAAGTCGTACATTCACAAGTCTGCCGGTTGAAGACCCGAATTGACAAAGTGGTCAAGGAAAACCCCGAATTGTTTGGCTCTGCTCAAAGTCCTGCTCTTGAAAATGCGAATGATTTACTAGCTGAAACTCTACCAAATGCATTTCAGCATAGTTCTGAGTGTAACATGGGACCTTTACTTTTGCCTGGGAGTGCAGTTTCAAGTCATGAAGGGTTAACCCGTCTCCCTGGTATGATTGGGAACACAGATCAGCCTTGGATTGGCATTGAACAGGAAAATGCCGAGGATGAATACCTTGTACCTAATGCAGCTGTCAAGAAAGAGCCACATGATTTTGAAAACAATGAAGATCAGGTCATACAGAAGCCTCTCCTATCGAGTGCACAGCAGAAAACTAATTTCTCGGTTCCAGCTTCAAAAACTGTGCCAAAAAAATCCAGCTTACCTAATGCAACTCAACAACCCGATTCCACTACGAGGACTGAATTCCCTTGGAACACAAGAAATCGTGGGAAGCGTAAACCTGGTTCGTATAGGTGGAGCCGGAAATCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

471

Amino Acids

53.18

Weight (kDa)

5.54

Isoelectric Point (pI)

50.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006015)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G37440 AT4G37440 AT4G37440
fragaria_vesca	FvH4_7g09930 FvH4_7g09930 FvH4_7g09930 FvH4_7g09930
malus_domestica	MD07G1104500.v1.1
prunus_persica	Prupe.2G128100_v2.0.a1 Prupe.2G128100_v2.0.a1 Prupe.2G128100_v2.0.a1 Prupe.2G128100_v2.0.a1
pyrus_communis	pycom07g08950
rosa_chinensis	RchiOBHm_Chr1g0347491 RchiOBHm_Chr1g0347521
rosa_laevigata	RLG00000028746
rosa_multiflora	Rmu_ssc0000280.1_g000003
rosa_roxburghii	Rroxscaffold_4G00307760
rosa_rugosa	Rorug01G0187100 Rorug01G0187200 Rorug01G0187300
rosa_samantha	Rh1AG204500 Rh1BG170300 Rh1CG189600 Rh1DG200600
rosa_wichuraiana	Rw0G013610 Rw1G017160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	911
AciI	CCGC	3 cut(s)	158, 524, 768
AcsI	RAATTY	5 cut(s)	440, 560, 618, 632, 1346
AcuI	CTGAAG	2 cut(s)	482, 600
AfaI	GTAC	3 cut(s)	835, 870, 1161
AfiI	CCNNNNNNNGG	3 cut(s)	13, 1121, 1338
AjnI	CCWGG	4 cut(s)	255, 1045, 1087, 1384
Alw21I	GWGCWC	2 cut(s)	275, 1246
Alw26I	GTCTC	2 cut(s)	59, 1088
Alw44I	GTGCAC	1 cut(s)	1242
AlwNI	CAGNNNCTG	3 cut(s)	38, 299, 511
Ama87I	CYCGRG	1 cut(s)	274
AoxI	GGCC	1 cut(s)	4
ApaI	GGGCCC	1 cut(s)	8
ApaLI	GTGCAC	1 cut(s)	1242
ApeKI	GCWGC	2 cut(s)	38, 1169
ApoI	RAATTY	5 cut(s)	440, 560, 618, 632, 1346
AspLEI	GCGC	1 cut(s)	465
AspS9I	GGNCC	3 cut(s)	4, 5, 1031
AsuHPI	GGTGA	2 cut(s)	344, 839
AvaI	CYCGRG	1 cut(s)	274
AvaII	GGWCC	1 cut(s)	1031
BaeGI	GKGCMC	2 cut(s)	8, 1246
BanII	GRGCYC	2 cut(s)	8, 275
BbsI	GAAGAC	1 cut(s)	899
Bbv12I	GWGCWC	2 cut(s)	275, 1246
BbvI	GCAGC	2 cut(s)	25, 1181
BccI	CCATC	6 cut(s)	232, 320, 373, 377, 584, 818
BceAI	ACGGC	1 cut(s)	808
BciT130I	CCWGG	4 cut(s)	257, 1047, 1089, 1386
BcoDI	GTCTC	2 cut(s)	59, 1088
BfaI	CTAG	2 cut(s)	980, 1414
BfmI	CTRYAG	1 cut(s)	482
BfoI	RGCGCY	1 cut(s)	466
BisI	GCNGC	2 cut(s)	39, 1170
BlsI	GCNGC	2 cut(s)	40, 1171
Bme1390I	CCNGG	4 cut(s)	257, 1047, 1089, 1386
Bme18I	GGWCC	1 cut(s)	1031
BmeT110I	CYCGRG	1 cut(s)	274
BmgT120I	GGNCC	3 cut(s)	4, 5, 1031
BmiI	GGNNCC	5 cut(s)	6, 751, 1032, 1269, 1403
BmrFI	CCNGG	4 cut(s)	257, 1047, 1089, 1386
BmsI	GCATC	1 cut(s)	511
BpiI	GAAGAC	1 cut(s)	899
BsaJI	CCNNGG	8 cut(s)	26, 753, 837, 1046, 1087, 1115, 1143, 1352
Bsc4I	CCNNNNNNNGG	3 cut(s)	13, 1121, 1338
Bse118I	RCCGGY	1 cut(s)	885
Bse1I	ACTGG	3 cut(s)	73, 219, 430
Bse3DI	GCAATG	1 cut(s)	48
BseBI	CCWGG	4 cut(s)	257, 1047, 1089, 1386
BseDI	CCNNGG	8 cut(s)	26, 753, 837, 1046, 1087, 1115, 1143, 1352
BseGI	GGATG	3 cut(s)	243, 331, 1153
BseLI	CCNNNNNNNGG	3 cut(s)	13, 1121, 1338
BseMI	GCAATG	1 cut(s)	48
BseMII	CTCAG	1 cut(s)	1008
BseNI	ACTGG	3 cut(s)	73, 219, 430
BseSI	GKGCMC	2 cut(s)	8, 1246
BseXI	GCAGC	2 cut(s)	25, 1181
BsgI	GTGCAG	1 cut(s)	1074
BshFI	GGCC	1 cut(s)	6
BsiHKAI	GWGCWC	2 cut(s)	275, 1246
BsiHKCI	CYCGRG	1 cut(s)	274
BsiSI	CCGG	2 cut(s)	886, 1405
BslFI	GGGAC	3 cut(s)	316, 487, 1044
BslI	CCNNNNNNNGG	3 cut(s)	13, 1121, 1338
BsmAI	GTCTC	2 cut(s)	59, 1088
BsmBI	CGTCTC	1 cut(s)	1088
BsmFI	GGGAC	3 cut(s)	316, 487, 1044
BsmI	GAATGC	1 cut(s)	257
BsnI	GGCC	1 cut(s)	6
BsoBI	CYCGRG	1 cut(s)	274
Bsp120I	GGGCCC	1 cut(s)	4
Bsp1286I	GDGCHC	3 cut(s)	8, 275, 1246
Bsp143I	GATC	2 cut(s)	1108, 1210
Bsp19I	CCATGG	1 cut(s)	753
BspACI	CCGC	3 cut(s)	158, 524, 768
BspANI	GGCC	1 cut(s)	6
BspCNI	CTCAG	1 cut(s)	1009
BspHI	TCATGA	2 cut(s)	636, 1066
BspLI	GGNNCC	5 cut(s)	6, 751, 1032, 1269, 1403
BspMAI	CTGCAG	1 cut(s)	486
BsrDI	GCAATG	1 cut(s)	48
BsrFI	RCCGGY	1 cut(s)	885
BsrI	ACTGG	3 cut(s)	73, 219, 430
BssAI	RCCGGY	1 cut(s)	885
BssECI	CCNNGG	8 cut(s)	26, 753, 837, 1046, 1087, 1115, 1143, 1352
BssMI	GATC	2 cut(s)	1108, 1210
BssT1I	CCWWGG	5 cut(s)	26, 753, 837, 1115, 1352
Bst2UI	CCWGG	4 cut(s)	257, 1047, 1089, 1386
Bst4CI	ACNGT	4 cut(s)	295, 351, 708, 1285
Bst6I	CTCTTC	2 cut(s)	753, 855
BstDEI	CTNAG	1 cut(s)	1017
BstDSI	CCRYGG	1 cut(s)	753
BstF5I	GGATG	3 cut(s)	243, 331, 1153
BstH2I	RGCGCY	1 cut(s)	466
BstHHI	GCGC	1 cut(s)	465
BstKTI	GATC	2 cut(s)	1111, 1213
BstMAI	GTCTC	2 cut(s)	59, 1088
BstMBI	GATC	2 cut(s)	1108, 1210
BstMWI	GCNNNNNNNGC	4 cut(s)	155, 164, 481, 530
BstNI	CCWGG	4 cut(s)	257, 1047, 1089, 1386
BstSCI	CCNGG	4 cut(s)	255, 1045, 1087, 1384
BstSFI	CTRYAG	1 cut(s)	482
BstSLI	GKGCMC	2 cut(s)	8, 1246
BstV1I	GCAGC	2 cut(s)	25, 1181
BstV2I	GAAGAC	1 cut(s)	899
BsuRI	GGCC	1 cut(s)	6
BtgI	CCRYGG	1 cut(s)	753
BtsCI	GGATG	3 cut(s)	243, 331, 1153
CaiI	CAGNNNCTG	3 cut(s)	38, 299, 511
CciI	TCATGA	2 cut(s)	636, 1066
CfoI	GCGC	1 cut(s)	465
Cfr10I	RCCGGY	1 cut(s)	885
Cfr13I	GGNCC	3 cut(s)	4, 5, 1031
CseI	GACGC	1 cut(s)	138
CsiI	ACCWGGT	1 cut(s)	1384
Csp6I	GTAC	3 cut(s)	834, 869, 1160
CviAII	CATG	6 cut(s)	142, 637, 754, 1027, 1067, 1190
CviQI	GTAC	3 cut(s)	834, 869, 1160
DdeI	CTNAG	1 cut(s)	1017
DpnI	GATC	2 cut(s)	1110, 1212
DpnII	GATC	2 cut(s)	1108, 1210
DrdI	GACNNNNNNGTC	1 cut(s)	911
DseDI	GACNNNNNNGTC	1 cut(s)	911
Eam1104I	CTCTTC	2 cut(s)	753, 855
EarI	CTCTTC	2 cut(s)	753, 855
Ecl136II	GAGCTC	1 cut(s)	273
Eco130I	CCWWGG	5 cut(s)	26, 753, 837, 1115, 1352
Eco24I	GRGCYC	2 cut(s)	8, 275
Eco47I	GGWCC	1 cut(s)	1031
Eco53kI	GAGCTC	1 cut(s)	273
Eco57I	CTGAAG	2 cut(s)	482, 600
Eco88I	CYCGRG	1 cut(s)	274
EcoICRI	GAGCTC	1 cut(s)	273
EcoO109I	RGGNCCY	2 cut(s)	5, 1031
EcoRI	GAATTC	1 cut(s)	1346
EcoRII	CCWGG	4 cut(s)	255, 1045, 1087, 1384
EcoT14I	CCWWGG	5 cut(s)	26, 753, 837, 1115, 1352
EcoT22I	ATGCAT	1 cut(s)	1003
EcoT38I	GRGCYC	2 cut(s)	8, 275
ErhI	CCWWGG	5 cut(s)	26, 753, 837, 1115, 1352
Esp3I	CGTCTC	1 cut(s)	1088
FaeI	CATG	6 cut(s)	145, 640, 757, 1030, 1070, 1193
FalI	AAGNNNNNCTT	2 cut(s)	834, 866
FaqI	GGGAC	3 cut(s)	316, 487, 1044
FatI	CATG	6 cut(s)	141, 636, 753, 1026, 1066, 1189
Fnu4HI	GCNGC	2 cut(s)	39, 1170
FokI	GGATG	3 cut(s)	250, 338, 1160
FriOI	GRGCYC	2 cut(s)	8, 275
Fsp4HI	GCNGC	2 cut(s)	39, 1170
FspBI	CTAG	2 cut(s)	980, 1414
GlaI	GCGC	1 cut(s)	464
GluI	GCNGC	2 cut(s)	39, 1170
HaeII	RGCGCY	1 cut(s)	466
HaeIII	GGCC	1 cut(s)	6
HapII	CCGG	2 cut(s)	886, 1405
HgaI	GACGC	1 cut(s)	138
HhaI	GCGC	1 cut(s)	465
Hin1II	CATG	6 cut(s)	145, 640, 757, 1030, 1070, 1193
Hin6I	GCGC	1 cut(s)	463
HinP1I	GCGC	1 cut(s)	463
HincII	GTYRAC	2 cut(s)	423, 1077
HindII	GTYRAC	2 cut(s)	423, 1077
HinfI	GANTC	3 cut(s)	190, 344, 1328
HpaI	GTTAAC	1 cut(s)	1077
HpaII	CCGG	2 cut(s)	886, 1405
HphI	GGTGA	2 cut(s)	344, 839
Hpy166II	GTNNAC	4 cut(s)	423, 1077, 1244, 1382
Hpy188I	TCNGA	7 cut(s)	34, 225, 237, 394, 821, 855, 1018
Hpy188III	TCNNGA	6 cut(s)	194, 637, 808, 959, 1067, 1177
Hpy8I	GTNNAC	4 cut(s)	423, 1077, 1244, 1382
HpyAV	CCTTC	2 cut(s)	575, 1064
HpyCH4III	ACNGT	4 cut(s)	295, 351, 708, 1285
HpyCH4IV	ACGT	3 cut(s)	231, 448, 692
HpyCH4V	TGCA	8 cut(s)	41, 484, 533, 1001, 1055, 1169, 1244, 1313
HpyF10VI	GCNNNNNNNGC	4 cut(s)	155, 164, 481, 530
HpyF3I	CTNAG	1 cut(s)	1017
HpySE526I	ACGT	3 cut(s)	231, 448, 692
Hsp92II	CATG	6 cut(s)	145, 640, 757, 1030, 1070, 1193
HspAI	GCGC	1 cut(s)	463
KspAI	GTTAAC	1 cut(s)	1077
Kzo9I	GATC	2 cut(s)	1108, 1210
LmnI	GCTCC	2 cut(s)	16, 1401
Lsp1109I	GCAGC	2 cut(s)	25, 1181
LweI	GCATC	1 cut(s)	511
MabI	ACCWGGT	1 cut(s)	1384
MaeI	CTAG	2 cut(s)	980, 1414
MaeII	ACGT	3 cut(s)	231, 448, 692
MaeIII	GTNAC	5 cut(s)	116, 227, 569, 788, 1022
MalI	GATC	2 cut(s)	1110, 1212
MboI	GATC	2 cut(s)	1108, 1210
MhlI	GDGCHC	3 cut(s)	8, 275, 1246
MmeI	TCCRAC	1 cut(s)	303
MnlI	CCTC	7 cut(s)	429, 462, 560, 754, 1138, 1239, 1332
Mph1103I	ATGCAT	1 cut(s)	1003
MseI	TTAA	3 cut(s)	138, 489, 1076
MspA1I	CMGCKG	3 cut(s)	56, 578, 1172
MspI	CCGG	2 cut(s)	886, 1405
MspR9I	CCNGG	4 cut(s)	257, 1047, 1089, 1386
Mva1269I	GAATGC	1 cut(s)	257
MvaI	CCWGG	4 cut(s)	257, 1047, 1089, 1386
MwoI	GCNNNNNNNGC	4 cut(s)	155, 164, 481, 530
NcoI	CCATGG	1 cut(s)	753
NdeII	GATC	2 cut(s)	1108, 1210
NlaIII	CATG	6 cut(s)	145, 640, 757, 1030, 1070, 1193
NlaIV	GGNNCC	5 cut(s)	6, 751, 1032, 1269, 1403
NmeAIII	GCCGAG	1 cut(s)	1168
NmuCI	GTSAC	2 cut(s)	227, 788
NsiI	ATGCAT	1 cut(s)	1003
PaeR7I	CTCGAG	1 cut(s)	274
PagI	TCATGA	2 cut(s)	636, 1066
PcsI	WCGNNNNNNNCGW	1 cut(s)	1375
PctI	GAATGC	1 cut(s)	257
PfeI	GAWTC	3 cut(s)	190, 344, 1328
PkrI	GCNGC	2 cut(s)	40, 1171
PpuMI	RGGWCCY	1 cut(s)	1031
Psp124BI	GAGCTC	1 cut(s)	275
Psp5II	RGGWCCY	1 cut(s)	1031
Psp6I	CCWGG	4 cut(s)	255, 1045, 1087, 1384
PspGI	CCWGG	4 cut(s)	255, 1045, 1087, 1384
PspN4I	GGNNCC	5 cut(s)	6, 751, 1032, 1269, 1403
PspOMI	GGGCCC	1 cut(s)	4
PspPI	GGNCC	3 cut(s)	4, 5, 1031
PspPPI	RGGWCCY	1 cut(s)	1031
PspXI	VCTCGAGB	1 cut(s)	274
PsrI	GAACNNNNNNTAC	2 cut(s)	1372, 1404
PstI	CTGCAG	1 cut(s)	486
PstNI	CAGNNNCTG	3 cut(s)	38, 299, 511
PvuII	CAGCTG	3 cut(s)	56, 578, 1172
RsaI	GTAC	3 cut(s)	835, 870, 1161
RsaNI	GTAC	3 cut(s)	834, 869, 1160
SacI	GAGCTC	1 cut(s)	275
SaqAI	TTAA	3 cut(s)	138, 489, 1076
SatI	GCNGC	2 cut(s)	39, 1170
Sau3AI	GATC	2 cut(s)	1108, 1210
Sau96I	GGNCC	3 cut(s)	4, 5, 1031
ScrFI	CCNGG	4 cut(s)	257, 1047, 1089, 1386
SduI	GDGCHC	3 cut(s)	8, 275, 1246
SexAI	ACCWGGT	1 cut(s)	1384
SfaNI	GCATC	1 cut(s)	511
SfcI	CTRYAG	1 cut(s)	482
Sfr274I	CTCGAG	1 cut(s)	274
SinI	GGWCC	1 cut(s)	1031
SlaI	CTCGAG	1 cut(s)	274
SmlI	CTYRAG	1 cut(s)	274
SmoI	CTYRAG	1 cut(s)	274
SsiI	CCGC	3 cut(s)	158, 524, 768
SspI	AATATT	2 cut(s)	133, 205
SspMI	CTAG	2 cut(s)	980, 1414
SstI	GAGCTC	1 cut(s)	275
StyD4I	CCNGG	4 cut(s)	255, 1045, 1087, 1384
StyI	CCWWGG	5 cut(s)	26, 753, 837, 1115, 1352
TaaI	ACNGT	4 cut(s)	295, 351, 708, 1285
TaiI	ACGT	3 cut(s)	234, 451, 695
TaqI	TCGA	4 cut(s)	275, 477, 807, 1238
TfiI	GAWTC	3 cut(s)	190, 344, 1328
Tru1I	TTAA	3 cut(s)	138, 489, 1076
Tru9I	TTAA	3 cut(s)	138, 489, 1076
TseFI	GTSAC	2 cut(s)	227, 788
TseI	GCWGC	2 cut(s)	38, 1169
Tsp45I	GTSAC	2 cut(s)	227, 788
VneI	GTGCAC	1 cut(s)	1242
VpaK11BI	GGWCC	1 cut(s)	1031
XapI	RAATTY	5 cut(s)	440, 560, 618, 632, 1346
XhoI	CTCGAG	1 cut(s)	274
XspI	CTAG	2 cut(s)	980, 1414
Zsp2I	ATGCAT	1 cut(s)	1003

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.