Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00612

Orthogroup ID

OG0006015

Physical Location & Seq

Genomic Coordinates Forward (+)

7324 .. 11653

Gene Structure 4330 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G013610.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1311 bp

ATGGAAGTTTCAGCTGTAAAGGAGACTGGTGTAATTCATATAGAACCGGAAGAGAAGATTATGCCTTGTGTGAGTAACTACAAAGATAATATTTTTAACATGGAAGCATCATTTGCGGAACAAGCTACTACATCAAATAGAAGTGAGAATCAGGAGATAAATATTACCGATTGTGGCAGTCCGAATGACGTTCGGATGGTTGAAAATGAATGCCAGGACTTGACAGAGAGCTCGAGTTCTTTCGGTAATACAGTATCTGGGACAGAGAATGGTTTGATGTTGGATGGTGGTGATGAAGTTGAATCACAGTATTGTGAAAATCCATCGGTGTCATTATATGATGGATATTCTGATGCATTTCATACCAGGAAGAAAAAGTTGACTGGTCATTGGAGGAAATTTATACGTCCTCTTATGTGGCGCTGTAAATGGCTCGAACTGCAGATTAAGGAGCTTCAGTCCCAGACCCTGAAATATGATGCGGAACTTGCAGAATATGATAAAGCAAAGCAGTTTGAATTTGGAGGTTACACAGCTGAAGGTTTTGATGGAAAGTCAATACCATTTTCAAGTCAAATTCAAAGAAACAAATTCATGAAAAGGAAGAAAAGAAAGAGAATTGAAGATACTACTGATATAGTGTCATTTACGTCAAACCATAAACTGTTTTCCTATTATGAAAATAAAAATTCTGGTGCTAATGGTGGTTCCATGGAAGAGGATTGTGGTAATTTAGGTAACAGTAAAAGTAGTCATGGCATAAATGAGTTTGACATTGAGTTCAGAGATGGTGATAGTACCTTGGAAGATACTCTTCGGAAGATTGAAGTGGTACATTCACAAGTCTGCCGGTTAAAGACCCGAATTGACAAGGTGGTCAAGGAAAATCCTGCATTGTTTGGCTTTGCTCAAAGTCCTGCTCTTGAAAATGGGAATGATTCACTAGCTGAAACTCTACCAAATGCATTTCAGCATAGTTCTGAGTGTAACATGGGACCTTTACTTTTGCCTGGGAGTGCAGTTTCAAGTCATGAAGGGTTAACCCCTCTCCCTGGTATGATTGGGAACACAGATCAGCCTTGGATTGGCACTGAACAGGAAAATCCGAGATGTGGATACCTTGTACCTAATGCAGCTGTCAAGAAAGAGCAACATGATTTTGAAAACAATAAAGATCAGGTCATAGAGCAGCCTCTCCTATCGAGTGCACAGCAGAAAACTAATTTCTCAGTTCCAGCTTCAAAAACTGTGCCAAAAAAATCCAGCTTACCTAATGCAACTCAACAAACCCGATTCCACTACGAGGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

436

Amino Acids

48.91

Weight (kDa)

5.17

Isoelectric Point (pI)

51.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006015)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G37440 AT4G37440 AT4G37440
fragaria_vesca	FvH4_7g09930 FvH4_7g09930 FvH4_7g09930 FvH4_7g09930
malus_domestica	MD07G1104500.v1.1
prunus_persica	Prupe.2G128100_v2.0.a1 Prupe.2G128100_v2.0.a1 Prupe.2G128100_v2.0.a1 Prupe.2G128100_v2.0.a1
pyrus_communis	pycom07g08950
rosa_chinensis	RchiOBHm_Chr1g0347491 RchiOBHm_Chr1g0347521
rosa_laevigata	RLG00000028746
rosa_multiflora	Rmu_ssc0000280.1_g000003
rosa_roxburghii	Rroxscaffold_4G00307760
rosa_rugosa	Rorug01G0187100 Rorug01G0187200 Rorug01G0187300
rosa_samantha	Rh1AG204500 Rh1BG170300 Rh1CG189600 Rh1DG200600
rosa_wichuraiana	Rw0G013610 Rw1G017160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	875
AciI	CCGC	2 cut(s)	116, 482
AcsI	RAATTY	5 cut(s)	398, 518, 576, 590, 688
AcuI	CTGAAG	2 cut(s)	440, 558
AfaI	GTAC	3 cut(s)	799, 834, 1125
AfiI	CCNNNNNNNGG	4 cut(s)	1052, 1085, 1112, 1303
AjnI	CCWGG	4 cut(s)	213, 365, 1009, 1051
AluBI	AGCT	9 cut(s)	14, 125, 231, 454, 536, 947, 1136, 1238, 1266
AluI	AGCT	9 cut(s)	14, 125, 231, 454, 536, 947, 1136, 1238, 1266
Alw21I	GWGCWC	2 cut(s)	233, 1210
Alw26I	GTCTC	1 cut(s)	17
Alw44I	GTGCAC	1 cut(s)	1206
AlwNI	CAGNNNCTG	2 cut(s)	257, 469
Ama87I	CYCGRG	1 cut(s)	232
ApaLI	GTGCAC	1 cut(s)	1206
ApeKI	GCWGC	2 cut(s)	1133, 1189
ApoI	RAATTY	5 cut(s)	398, 518, 576, 590, 688
AspLEI	GCGC	1 cut(s)	423
AspS9I	GGNCC	1 cut(s)	995
AsuHPI	GGTGA	2 cut(s)	302, 803
AvaI	CYCGRG	1 cut(s)	232
AvaII	GGWCC	1 cut(s)	995
BaeGI	GKGCMC	1 cut(s)	1210
BanII	GRGCYC	1 cut(s)	233
Bbv12I	GWGCWC	2 cut(s)	233, 1210
BbvI	GCAGC	2 cut(s)	1145, 1201
BccI	CCATC	6 cut(s)	190, 278, 331, 335, 542, 782
BciT130I	CCWGG	4 cut(s)	215, 367, 1011, 1053
BciVI	GTATCC	1 cut(s)	1109
BcoDI	GTCTC	1 cut(s)	17
BfaI	CTAG	1 cut(s)	944
BfmI	CTRYAG	1 cut(s)	440
BfoI	RGCGCY	1 cut(s)	424
BfuI	GTATCC	1 cut(s)	1109
BisI	GCNGC	2 cut(s)	1134, 1190
BlsI	GCNGC	2 cut(s)	1135, 1191
Bme1390I	CCNGG	4 cut(s)	215, 367, 1011, 1053
Bme18I	GGWCC	1 cut(s)	995
BmeT110I	CYCGRG	1 cut(s)	232
BmgT120I	GGNCC	1 cut(s)	995
BmiI	GGNNCC	2 cut(s)	709, 996
BmrFI	CCNGG	4 cut(s)	215, 367, 1011, 1053
BmsI	GCATC	3 cut(s)	116, 343, 469
BsaJI	CCNNGG	5 cut(s)	711, 801, 1010, 1051, 1079
BsaWI	WCCGGW	1 cut(s)	46
BsaXI	ACNNNNNCTCC	2 cut(s)	443, 473
Bsc4I	CCNNNNNNNGG	4 cut(s)	1052, 1085, 1112, 1303
Bse118I	RCCGGY	1 cut(s)	849
Bse1I	ACTGG	2 cut(s)	31, 388
BseBI	CCWGG	4 cut(s)	215, 367, 1011, 1053
BseDI	CCNNGG	5 cut(s)	711, 801, 1010, 1051, 1079
BseGI	GGATG	2 cut(s)	201, 289
BseLI	CCNNNNNNNGG	4 cut(s)	1052, 1085, 1112, 1303
BseMII	CTCAG	2 cut(s)	972, 1242
BseNI	ACTGG	2 cut(s)	31, 388
BseSI	GKGCMC	1 cut(s)	1210
BseXI	GCAGC	2 cut(s)	1145, 1201
BsgI	GTGCAG	1 cut(s)	1038
BsiHKAI	GWGCWC	2 cut(s)	233, 1210
BsiHKCI	CYCGRG	1 cut(s)	232
BsiSI	CCGG	2 cut(s)	47, 850
BslFI	GGGAC	3 cut(s)	274, 445, 1008
BslI	CCNNNNNNNGG	4 cut(s)	1052, 1085, 1112, 1303
BsmAI	GTCTC	1 cut(s)	17
BsmFI	GGGAC	3 cut(s)	274, 445, 1008
BsmI	GAATGC	1 cut(s)	215
BsoBI	CYCGRG	1 cut(s)	232
Bsp1286I	GDGCHC	2 cut(s)	233, 1210
Bsp143I	GATC	2 cut(s)	1072, 1174
Bsp19I	CCATGG	1 cut(s)	711
BspACI	CCGC	2 cut(s)	116, 482
BspCNI	CTCAG	2 cut(s)	973, 1241
BspHI	TCATGA	2 cut(s)	594, 1030
BspLI	GGNNCC	2 cut(s)	709, 996
BspMAI	CTGCAG	1 cut(s)	444
BsrFI	RCCGGY	1 cut(s)	849
BsrI	ACTGG	2 cut(s)	31, 388
BssAI	RCCGGY	1 cut(s)	849
BssECI	CCNNGG	5 cut(s)	711, 801, 1010, 1051, 1079
BssMI	GATC	2 cut(s)	1072, 1174
BssT1I	CCWWGG	3 cut(s)	711, 801, 1079
Bst2UI	CCWGG	4 cut(s)	215, 367, 1011, 1053
Bst4CI	ACNGT	5 cut(s)	253, 309, 666, 743, 1249
Bst6I	CTCTTC	3 cut(s)	45, 711, 819
BstAPI	GCANNNNNTGC	1 cut(s)	113
BstDEI	CTNAG	2 cut(s)	981, 1228
BstDSI	CCRYGG	1 cut(s)	711
BstF5I	GGATG	2 cut(s)	201, 289
BstH2I	RGCGCY	1 cut(s)	424
BstHHI	GCGC	1 cut(s)	423
BstKTI	GATC	2 cut(s)	1075, 1177
BstMAI	GTCTC	1 cut(s)	17
BstMBI	GATC	2 cut(s)	1072, 1174
BstMWI	GCNNNNNNNGC	4 cut(s)	113, 122, 439, 488
BstNI	CCWGG	4 cut(s)	215, 367, 1011, 1053
BstSCI	CCNGG	4 cut(s)	213, 365, 1009, 1051
BstSFI	CTRYAG	1 cut(s)	440
BstSLI	GKGCMC	1 cut(s)	1210
BstV1I	GCAGC	2 cut(s)	1145, 1201
BsuI	GTATCC	1 cut(s)	1109
BtgI	CCRYGG	1 cut(s)	711
BtsCI	GGATG	2 cut(s)	201, 289
BtsIMutI	CAGTG	1 cut(s)	1089
CaiI	CAGNNNCTG	2 cut(s)	257, 469
CciI	TCATGA	2 cut(s)	594, 1030
CfoI	GCGC	1 cut(s)	423
Cfr10I	RCCGGY	1 cut(s)	849
Cfr13I	GGNCC	1 cut(s)	995
Csp6I	GTAC	3 cut(s)	798, 833, 1124
CviAII	CATG	7 cut(s)	100, 595, 712, 755, 991, 1031, 1154
CviQI	GTAC	3 cut(s)	798, 833, 1124
DdeI	CTNAG	2 cut(s)	981, 1228
DpnI	GATC	2 cut(s)	1074, 1176
DpnII	GATC	2 cut(s)	1072, 1174
DrdI	GACNNNNNNGTC	1 cut(s)	875
DseDI	GACNNNNNNGTC	1 cut(s)	875
Eam1104I	CTCTTC	3 cut(s)	45, 711, 819
EarI	CTCTTC	3 cut(s)	45, 711, 819
Ecl136II	GAGCTC	1 cut(s)	231
Eco130I	CCWWGG	3 cut(s)	711, 801, 1079
Eco24I	GRGCYC	1 cut(s)	233
Eco47I	GGWCC	1 cut(s)	995
Eco53kI	GAGCTC	1 cut(s)	231
Eco57I	CTGAAG	2 cut(s)	440, 558
Eco88I	CYCGRG	1 cut(s)	232
EcoICRI	GAGCTC	1 cut(s)	231
EcoO109I	RGGNCCY	1 cut(s)	995
EcoRII	CCWGG	4 cut(s)	213, 365, 1009, 1051
EcoT14I	CCWWGG	3 cut(s)	711, 801, 1079
EcoT22I	ATGCAT	2 cut(s)	358, 967
EcoT38I	GRGCYC	1 cut(s)	233
ErhI	CCWWGG	3 cut(s)	711, 801, 1079
FaeI	CATG	7 cut(s)	103, 598, 715, 758, 994, 1034, 1157
FalI	AAGNNNNNCTT	2 cut(s)	798, 830
FaqI	GGGAC	3 cut(s)	274, 445, 1008
FatI	CATG	7 cut(s)	99, 594, 711, 754, 990, 1030, 1153
Fnu4HI	GCNGC	2 cut(s)	1134, 1190
FokI	GGATG	2 cut(s)	208, 296
FriOI	GRGCYC	1 cut(s)	233
Fsp4HI	GCNGC	2 cut(s)	1134, 1190
FspBI	CTAG	1 cut(s)	944
GlaI	GCGC	1 cut(s)	422
GluI	GCNGC	2 cut(s)	1134, 1190
HaeII	RGCGCY	1 cut(s)	424
HapII	CCGG	2 cut(s)	47, 850
HhaI	GCGC	1 cut(s)	423
Hin1II	CATG	7 cut(s)	103, 598, 715, 758, 994, 1034, 1157
Hin6I	GCGC	1 cut(s)	421
HinP1I	GCGC	1 cut(s)	421
HincII	GTYRAC	2 cut(s)	381, 1041
HindII	GTYRAC	2 cut(s)	381, 1041
HinfI	GANTC	4 cut(s)	148, 302, 938, 1293
HpaI	GTTAAC	1 cut(s)	1041
HpaII	CCGG	2 cut(s)	47, 850
HphI	GGTGA	2 cut(s)	302, 803
Hpy166II	GTNNAC	3 cut(s)	381, 1041, 1208
Hpy188I	TCNGA	7 cut(s)	183, 195, 352, 785, 819, 982, 1107
Hpy188III	TCNNGA	5 cut(s)	152, 595, 923, 1031, 1141
Hpy8I	GTNNAC	3 cut(s)	381, 1041, 1208
HpyAV	CCTTC	2 cut(s)	533, 1028
HpyCH4III	ACNGT	5 cut(s)	253, 309, 666, 743, 1249
HpyCH4IV	ACGT	3 cut(s)	189, 406, 650
HpyCH4V	TGCA	9 cut(s)	356, 442, 491, 893, 965, 1019, 1133, 1208, 1277
HpyF10VI	GCNNNNNNNGC	4 cut(s)	113, 122, 439, 488
HpyF3I	CTNAG	2 cut(s)	981, 1228
HpySE526I	ACGT	3 cut(s)	189, 406, 650
Hsp92II	CATG	7 cut(s)	103, 598, 715, 758, 994, 1034, 1157
HspAI	GCGC	1 cut(s)	421
KspAI	GTTAAC	1 cut(s)	1041
Kzo9I	GATC	2 cut(s)	1072, 1174
LmnI	GCTCC	1 cut(s)	451
Lsp1109I	GCAGC	2 cut(s)	1145, 1201
LweI	GCATC	3 cut(s)	116, 343, 469
MaeI	CTAG	1 cut(s)	944
MaeII	ACGT	3 cut(s)	189, 406, 650
MaeIII	GTNAC	4 cut(s)	74, 527, 737, 986
MalI	GATC	2 cut(s)	1074, 1176
MboI	GATC	2 cut(s)	1072, 1174
MboII	GAAGA	9 cut(s)	62, 67, 382, 616, 635, 728, 806, 818, 832
MhlI	GDGCHC	2 cut(s)	233, 1210
MmeI	TCCRAC	1 cut(s)	261
MnlI	CCTC	7 cut(s)	387, 420, 518, 712, 1056, 1203, 1297
Mph1103I	ATGCAT	2 cut(s)	358, 967
MseI	TTAA	4 cut(s)	96, 447, 854, 1040
MspA1I	CMGCKG	3 cut(s)	14, 536, 1136
MspI	CCGG	2 cut(s)	47, 850
MspR9I	CCNGG	4 cut(s)	215, 367, 1011, 1053
Mva1269I	GAATGC	1 cut(s)	215
MvaI	CCWGG	4 cut(s)	215, 367, 1011, 1053
MwoI	GCNNNNNNNGC	4 cut(s)	113, 122, 439, 488
NcoI	CCATGG	1 cut(s)	711
NdeII	GATC	2 cut(s)	1072, 1174
NlaIII	CATG	7 cut(s)	103, 598, 715, 758, 994, 1034, 1157
NlaIV	GGNNCC	2 cut(s)	709, 996
NsiI	ATGCAT	2 cut(s)	358, 967
PaeR7I	CTCGAG	1 cut(s)	232
PagI	TCATGA	2 cut(s)	594, 1030
PctI	GAATGC	1 cut(s)	215
PfeI	GAWTC	4 cut(s)	148, 302, 938, 1293
PkrI	GCNGC	2 cut(s)	1135, 1191
PpuMI	RGGWCCY	1 cut(s)	995
Psp124BI	GAGCTC	1 cut(s)	233
Psp5II	RGGWCCY	1 cut(s)	995
Psp6I	CCWGG	4 cut(s)	213, 365, 1009, 1051
PspGI	CCWGG	4 cut(s)	213, 365, 1009, 1051
PspN4I	GGNNCC	2 cut(s)	709, 996
PspPI	GGNCC	1 cut(s)	995
PspPPI	RGGWCCY	1 cut(s)	995
PspXI	VCTCGAGB	1 cut(s)	232
PstI	CTGCAG	1 cut(s)	444
PstNI	CAGNNNCTG	2 cut(s)	257, 469
PvuII	CAGCTG	3 cut(s)	14, 536, 1136
RsaI	GTAC	3 cut(s)	799, 834, 1125
RsaNI	GTAC	3 cut(s)	798, 833, 1124
SacI	GAGCTC	1 cut(s)	233
SaqAI	TTAA	4 cut(s)	96, 447, 854, 1040
SatI	GCNGC	2 cut(s)	1134, 1190
Sau3AI	GATC	2 cut(s)	1072, 1174
Sau96I	GGNCC	1 cut(s)	995
ScrFI	CCNGG	4 cut(s)	215, 367, 1011, 1053
SduI	GDGCHC	2 cut(s)	233, 1210
SfaNI	GCATC	3 cut(s)	116, 343, 469
SfcI	CTRYAG	1 cut(s)	440
Sfr274I	CTCGAG	1 cut(s)	232
SinI	GGWCC	1 cut(s)	995
SlaI	CTCGAG	1 cut(s)	232
SmlI	CTYRAG	1 cut(s)	232
SmoI	CTYRAG	1 cut(s)	232
SsiI	CCGC	2 cut(s)	116, 482
SspI	AATATT	2 cut(s)	91, 163
SspMI	CTAG	1 cut(s)	944
SstI	GAGCTC	1 cut(s)	233
StyD4I	CCNGG	4 cut(s)	213, 365, 1009, 1051
StyI	CCWWGG	3 cut(s)	711, 801, 1079
TaaI	ACNGT	5 cut(s)	253, 309, 666, 743, 1249
TaiI	ACGT	3 cut(s)	192, 409, 653
TaqI	TCGA	3 cut(s)	233, 435, 1202
TfiI	GAWTC	4 cut(s)	148, 302, 938, 1293
Tru1I	TTAA	4 cut(s)	96, 447, 854, 1040
Tru9I	TTAA	4 cut(s)	96, 447, 854, 1040
TscAI	CASTG	1 cut(s)	1096
TseI	GCWGC	2 cut(s)	1133, 1189
TspDTI	ATGAA	8 cut(s)	26, 222, 309, 350, 583, 611, 693, 1047
TspRI	CASTG	1 cut(s)	1096
VneI	GTGCAC	1 cut(s)	1206
VpaK11BI	GGWCC	1 cut(s)	995
XapI	RAATTY	5 cut(s)	398, 518, 576, 590, 688
XhoI	CTCGAG	1 cut(s)	232
XspI	CTAG	1 cut(s)	944
Zsp2I	ATGCAT	2 cut(s)	358, 967

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.