Rh1AG204500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0006015
Physical Location & Seq
Forward (+)
38811947 .. 38816681
4735 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG204500.1

Sequence Viewer

Length: 1419 bp
ATGGGCCCTGAATTGGAGCTGAAACCAAAGTCAGAAGCTGCAATGGAAGTTTCAGCTGTAAAGGAGACTGGTGTAATTCATATTGAACCAGAAGAGAAGATTATGCCTTGTGTGAGTAACTACAAAGATAATATTTTTAACATGGAAGCATCATTTGCAGAACAAGCTACTACATCAAATAGAAGTGAGAATCAGGAGATAAATATTACCGATTGTGCCAGTCCAAGTGACGTTAGGATGGTTGAAAATGAATGCCAGGACTTGACAGAGAGCTCGAGTTCTTTCGGTAATACAGTATCTGGGACAGAGAATGGTTTGATGTTGGATGGTGGTGATGAAGTTGAATCACAGTATTGTGAAAATCCATCGGTGTCGTTATATGATGGATATTCTGATGCATTTCATACCAGGAAGAAAAAGTTGACTGGTCATTGGAGGAAATTTATACGTCCTCTTATGTGGCGCTGTAAATGGCTCGAACTGCAGATTAAGGAGGTTCAGTCCCAGACCCTGAAATATGATGCGGAACTTGCAGAATATGATAAAGTAAAGCAGTTTGAATTTGGAGGTTACACAGCTGAAGGTTTTGATGGAAAGTCAATACCATTTTCAAGTCAAATTCAAAGAAACAAATTCATGAAAAGGAAGAAAAGAAAGAGAATTGAAGATACTACTGATATAGTGTCATTTACGTCAAACCATAAACTGTTTTCCTATTATGAAAATAAAAATTCTGGTGCTAATGGTGGTTCCATGGAAGAGGATTGTGGTAATTTAGCAGGTAAAAGTAGTCATGGCATAAATGAGTTTGACATTGAGTTCAGAGATGGTGATAGTACCTTGGAAGATACTCTTCGGAAGATTGAAGTGGTACATTCACAAGTCTGCCGGTTAAAGACCCGAATTGACAAGGTGGTCAAGGAAAATCCCGCATTGTTTGGCTTTGCTCAAAGTCCTGCTCTTGAAAATGGGAATGATTCACTAGCTGAAACTCTACCAAATGCATTTCAGCATAGTTTTGAGTGTAACATGGGACCTTTACTTTTGCCTGGGAGTGCAGTTTCAAGTCATGAAGGGTTAACCCCTCTCCCTGGTATGATTGGGAACACAGATCAGCCTTGGATTGGCACTGAACAGGAAAATGCCGAGGATGGATACCTTGTACCTAATGCAGCTGTCAAGAAAGAGCAACATGATTTTGAAAACAATAAAGATCAGGTCATACAGCAGCCTCTCCTATCGAGTGCACAGCAGAAAACTAATTTCTCAGTTCCAGCTTCAAAAACTGTGCCAAAAAAATCCAGCTTACCTAATGCAACTCAACAACCCGATTCCACTACGAGGACTGAATTCCCTTGGAACACAAGAAATCGTGGGAAGCGTAAACCTGGTTCGTATAGGTGGAGTCGGAAATCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

472

Amino Acids

52.97

Weight (kDa)

5.44

Isoelectric Point (pI)

49.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 914
Acc36I ACCTGC 1 cut(s) 770
AciI CCGC 2 cut(s) 524, 930
AcsI RAATTY 6 cut(s) 440, 560, 618, 632, 730, 1349
AcuI CTGAAG 1 cut(s) 600
AfaI GTAC 3 cut(s) 838, 873, 1164
AfiI CCNNNNNNNGG 4 cut(s) 13, 1091, 1124, 1341
AjnI CCWGG 5 cut(s) 255, 407, 1048, 1090, 1387
Alw21I GWGCWC 2 cut(s) 275, 1249
Alw26I GTCTC 1 cut(s) 59
Alw44I GTGCAC 1 cut(s) 1245
AlwNI CAGNNNCTG 3 cut(s) 38, 299, 511
Ama87I CYCGRG 1 cut(s) 274
AoxI GGCC 1 cut(s) 4
ApaI GGGCCC 1 cut(s) 8
ApaLI GTGCAC 1 cut(s) 1245
ApeKI GCWGC 3 cut(s) 38, 1172, 1228
ApoI RAATTY 6 cut(s) 440, 560, 618, 632, 730, 1349
AspLEI GCGC 1 cut(s) 465
AspS9I GGNCC 3 cut(s) 4, 5, 1034
AsuHPI GGTGA 2 cut(s) 344, 842
AvaI CYCGRG 1 cut(s) 274
AvaII GGWCC 1 cut(s) 1034
BaeGI GKGCMC 2 cut(s) 8, 1249
BanII GRGCYC 2 cut(s) 8, 275
Bbv12I GWGCWC 2 cut(s) 275, 1249
BbvI GCAGC 3 cut(s) 25, 1184, 1240
BccI CCATC 7 cut(s) 232, 320, 373, 377, 584, 821, 1145
BciT130I CCWGG 5 cut(s) 257, 409, 1050, 1092, 1389
BciVI GTATCC 1 cut(s) 1148
BcoDI GTCTC 1 cut(s) 59
BfaI CTAG 2 cut(s) 983, 1417
BfmI CTRYAG 1 cut(s) 482
BfoI RGCGCY 1 cut(s) 466
BfuAI ACCTGC 1 cut(s) 770
BfuI GTATCC 1 cut(s) 1148
BisI GCNGC 3 cut(s) 39, 1173, 1229
BlsI GCNGC 3 cut(s) 40, 1174, 1230
Bme1390I CCNGG 5 cut(s) 257, 409, 1050, 1092, 1389
Bme18I GGWCC 1 cut(s) 1034
BmeT110I CYCGRG 1 cut(s) 274
BmgT120I GGNCC 3 cut(s) 4, 5, 1034
BmiI GGNNCC 3 cut(s) 6, 751, 1035
BmrFI CCNGG 5 cut(s) 257, 409, 1050, 1092, 1389
BmsI GCATC 3 cut(s) 158, 385, 511
BsaJI CCNNGG 7 cut(s) 753, 840, 1049, 1090, 1118, 1146, 1355
BsaXI ACNNNNNCTCC 2 cut(s) 485, 515
Bsc4I CCNNNNNNNGG 4 cut(s) 13, 1091, 1124, 1341
Bse118I RCCGGY 1 cut(s) 888
Bse1I ACTGG 3 cut(s) 73, 219, 430
Bse3DI GCAATG 1 cut(s) 48
BseBI CCWGG 5 cut(s) 257, 409, 1050, 1092, 1389
BseDI CCNNGG 7 cut(s) 753, 840, 1049, 1090, 1118, 1146, 1355
BseGI GGATG 3 cut(s) 243, 331, 1156
BseLI CCNNNNNNNGG 4 cut(s) 13, 1091, 1124, 1341
BseMI GCAATG 1 cut(s) 48
BseMII CTCAG 1 cut(s) 1281
BseNI ACTGG 3 cut(s) 73, 219, 430
BseSI GKGCMC 2 cut(s) 8, 1249
BseXI GCAGC 3 cut(s) 25, 1184, 1240
BsgI GTGCAG 1 cut(s) 1077
BshFI GGCC 1 cut(s) 6
BsiHKAI GWGCWC 2 cut(s) 275, 1249
BsiHKCI CYCGRG 1 cut(s) 274
BsiSI CCGG 1 cut(s) 889
BslFI GGGAC 3 cut(s) 316, 487, 1047
BslI CCNNNNNNNGG 4 cut(s) 13, 1091, 1124, 1341
BsmAI GTCTC 1 cut(s) 59
BsmFI GGGAC 3 cut(s) 316, 487, 1047
BsmI GAATGC 1 cut(s) 257
BsnI GGCC 1 cut(s) 6
BsoBI CYCGRG 1 cut(s) 274
Bsp120I GGGCCC 1 cut(s) 4
Bsp1286I GDGCHC 3 cut(s) 8, 275, 1249
Bsp143I GATC 2 cut(s) 1111, 1213
Bsp19I CCATGG 1 cut(s) 753
BspACI CCGC 2 cut(s) 524, 930
BspANI GGCC 1 cut(s) 6
BspCNI CTCAG 1 cut(s) 1280
BspHI TCATGA 2 cut(s) 636, 1069
BspLI GGNNCC 3 cut(s) 6, 751, 1035
BspMAI CTGCAG 1 cut(s) 486
BspMI ACCTGC 1 cut(s) 770
BsrDI GCAATG 1 cut(s) 48
BsrFI RCCGGY 1 cut(s) 888
BsrI ACTGG 3 cut(s) 73, 219, 430
BssAI RCCGGY 1 cut(s) 888
BssECI CCNNGG 7 cut(s) 753, 840, 1049, 1090, 1118, 1146, 1355
BssMI GATC 2 cut(s) 1111, 1213
BssT1I CCWWGG 4 cut(s) 753, 840, 1118, 1355
Bst2UI CCWGG 5 cut(s) 257, 409, 1050, 1092, 1389
Bst4CI ACNGT 4 cut(s) 295, 351, 708, 1288
Bst6I CTCTTC 3 cut(s) 87, 753, 858
BstAPI GCANNNNNTGC 1 cut(s) 155
BstDEI CTNAG 1 cut(s) 1267
BstDSI CCRYGG 1 cut(s) 753
BstF5I GGATG 3 cut(s) 243, 331, 1156
BstH2I RGCGCY 1 cut(s) 466
BstHHI GCGC 1 cut(s) 465
BstKTI GATC 2 cut(s) 1114, 1216
BstMAI GTCTC 1 cut(s) 59
BstMBI GATC 2 cut(s) 1111, 1213
BstMWI GCNNNNNNNGC 4 cut(s) 155, 164, 481, 530
BstNI CCWGG 5 cut(s) 257, 409, 1050, 1092, 1389
BstSCI CCNGG 5 cut(s) 255, 407, 1048, 1090, 1387
BstSFI CTRYAG 1 cut(s) 482
BstSLI GKGCMC 2 cut(s) 8, 1249
BstV1I GCAGC 3 cut(s) 25, 1184, 1240
BsuI GTATCC 1 cut(s) 1148
BsuRI GGCC 1 cut(s) 6
BtgI CCRYGG 1 cut(s) 753
BtsCI GGATG 3 cut(s) 243, 331, 1156
BtsIMutI CAGTG 1 cut(s) 1128
BveI ACCTGC 1 cut(s) 770
CaiI CAGNNNCTG 3 cut(s) 38, 299, 511
CciI TCATGA 2 cut(s) 636, 1069
CfoI GCGC 1 cut(s) 465
Cfr10I RCCGGY 1 cut(s) 888
Cfr13I GGNCC 3 cut(s) 4, 5, 1034
CsiI ACCWGGT 1 cut(s) 1387
Csp6I GTAC 3 cut(s) 837, 872, 1163
CviAII CATG 7 cut(s) 142, 637, 754, 794, 1030, 1070, 1193
CviQI GTAC 3 cut(s) 837, 872, 1163
DdeI CTNAG 1 cut(s) 1267
DpnI GATC 2 cut(s) 1113, 1215
DpnII GATC 2 cut(s) 1111, 1213
DrdI GACNNNNNNGTC 1 cut(s) 914
DseDI GACNNNNNNGTC 1 cut(s) 914
Eam1104I CTCTTC 3 cut(s) 87, 753, 858
EarI CTCTTC 3 cut(s) 87, 753, 858
Ecl136II GAGCTC 1 cut(s) 273
Eco130I CCWWGG 4 cut(s) 753, 840, 1118, 1355
Eco24I GRGCYC 2 cut(s) 8, 275
Eco47I GGWCC 1 cut(s) 1034
Eco53kI GAGCTC 1 cut(s) 273
Eco57I CTGAAG 1 cut(s) 600
Eco88I CYCGRG 1 cut(s) 274
EcoICRI GAGCTC 1 cut(s) 273
EcoO109I RGGNCCY 2 cut(s) 5, 1034
EcoRI GAATTC 1 cut(s) 1349
EcoRII CCWGG 5 cut(s) 255, 407, 1048, 1090, 1387
EcoT14I CCWWGG 4 cut(s) 753, 840, 1118, 1355
EcoT22I ATGCAT 2 cut(s) 400, 1006
EcoT38I GRGCYC 2 cut(s) 8, 275
ErhI CCWWGG 4 cut(s) 753, 840, 1118, 1355
FaeI CATG 7 cut(s) 145, 640, 757, 797, 1033, 1073, 1196
FalI AAGNNNNNCTT 2 cut(s) 837, 869
FaqI GGGAC 3 cut(s) 316, 487, 1047
FatI CATG 7 cut(s) 141, 636, 753, 793, 1029, 1069, 1192
FauI CCCGC 1 cut(s) 937
Fnu4HI GCNGC 3 cut(s) 39, 1173, 1229
FokI GGATG 3 cut(s) 250, 338, 1163
FriOI GRGCYC 2 cut(s) 8, 275
Fsp4HI GCNGC 3 cut(s) 39, 1173, 1229
FspBI CTAG 2 cut(s) 983, 1417
GlaI GCGC 1 cut(s) 464
GluI GCNGC 3 cut(s) 39, 1173, 1229
HaeII RGCGCY 1 cut(s) 466
HaeIII GGCC 1 cut(s) 6
HapII CCGG 1 cut(s) 889
HhaI GCGC 1 cut(s) 465
Hin1II CATG 7 cut(s) 145, 640, 757, 797, 1033, 1073, 1196
Hin6I GCGC 1 cut(s) 463
HinP1I GCGC 1 cut(s) 463
HincII GTYRAC 2 cut(s) 423, 1080
HindII GTYRAC 2 cut(s) 423, 1080
HinfI GANTC 5 cut(s) 190, 344, 977, 1331, 1405
HpaI GTTAAC 1 cut(s) 1080
HpaII CCGG 1 cut(s) 889
HphI GGTGA 2 cut(s) 344, 842
Hpy166II GTNNAC 4 cut(s) 423, 1080, 1247, 1385
Hpy188I TCNGA 5 cut(s) 34, 394, 824, 858, 1410
Hpy188III TCNNGA 5 cut(s) 194, 637, 962, 1070, 1180
Hpy8I GTNNAC 4 cut(s) 423, 1080, 1247, 1385
HpyAV CCTTC 2 cut(s) 575, 1067
HpyCH4III ACNGT 4 cut(s) 295, 351, 708, 1288
HpyCH4IV ACGT 3 cut(s) 231, 448, 692
HpyF10VI GCNNNNNNNGC 4 cut(s) 155, 164, 481, 530
HpyF3I CTNAG 1 cut(s) 1267
HpySE526I ACGT 3 cut(s) 231, 448, 692
Hsp92II CATG 7 cut(s) 145, 640, 757, 797, 1033, 1073, 1196
HspAI GCGC 1 cut(s) 463
KspAI GTTAAC 1 cut(s) 1080
Kzo9I GATC 2 cut(s) 1111, 1213
LmnI GCTCC 1 cut(s) 16
Lsp1109I GCAGC 3 cut(s) 25, 1184, 1240
LweI GCATC 3 cut(s) 158, 385, 511
MabI ACCWGGT 1 cut(s) 1387
MaeI CTAG 2 cut(s) 983, 1417
MaeII ACGT 3 cut(s) 231, 448, 692
MaeIII GTNAC 4 cut(s) 116, 227, 569, 1025
MalI GATC 2 cut(s) 1113, 1215
MboI GATC 2 cut(s) 1111, 1213
MboII GAAGA 9 cut(s) 104, 109, 424, 658, 677, 770, 845, 857, 871
MhlI GDGCHC 3 cut(s) 8, 275, 1249
MlyI GAGTC 1 cut(s) 1414
MmeI TCCRAC 2 cut(s) 303, 1388
MnlI CCTC 9 cut(s) 429, 462, 487, 560, 754, 1095, 1141, 1242, 1335
Mph1103I ATGCAT 2 cut(s) 400, 1006
MseI TTAA 4 cut(s) 138, 489, 893, 1079
MspA1I CMGCKG 3 cut(s) 56, 578, 1175
MspI CCGG 1 cut(s) 889
MspR9I CCNGG 5 cut(s) 257, 409, 1050, 1092, 1389
Mva1269I GAATGC 1 cut(s) 257
MvaI CCWGG 5 cut(s) 257, 409, 1050, 1092, 1389
MwoI GCNNNNNNNGC 4 cut(s) 155, 164, 481, 530
NcoI CCATGG 1 cut(s) 753
NdeII GATC 2 cut(s) 1111, 1213
NlaIII CATG 7 cut(s) 145, 640, 757, 797, 1033, 1073, 1196
NlaIV GGNNCC 3 cut(s) 6, 751, 1035
NmeAIII GCCGAG 1 cut(s) 1171
NmuCI GTSAC 1 cut(s) 227
NsiI ATGCAT 2 cut(s) 400, 1006
PaeR7I CTCGAG 1 cut(s) 274
PagI TCATGA 2 cut(s) 636, 1069
PcsI WCGNNNNNNNCGW 1 cut(s) 1378
PctI GAATGC 1 cut(s) 257
PfeI GAWTC 4 cut(s) 190, 344, 977, 1331
PkrI GCNGC 3 cut(s) 40, 1174, 1230
PleI GAGTC 1 cut(s) 1413
PpsI GAGTC 1 cut(s) 1413
PpuMI RGGWCCY 1 cut(s) 1034
Psp124BI GAGCTC 1 cut(s) 275
Psp5II RGGWCCY 1 cut(s) 1034
Psp6I CCWGG 5 cut(s) 255, 407, 1048, 1090, 1387
PspGI CCWGG 5 cut(s) 255, 407, 1048, 1090, 1387
PspN4I GGNNCC 3 cut(s) 6, 751, 1035
PspOMI GGGCCC 1 cut(s) 4
PspPI GGNCC 3 cut(s) 4, 5, 1034
PspPPI RGGWCCY 1 cut(s) 1034
PspXI VCTCGAGB 1 cut(s) 274
PsrI GAACNNNNNNTAC 2 cut(s) 1375, 1407
PstI CTGCAG 1 cut(s) 486
PstNI CAGNNNCTG 3 cut(s) 38, 299, 511
PvuII CAGCTG 3 cut(s) 56, 578, 1175
RsaI GTAC 3 cut(s) 838, 873, 1164
RsaNI GTAC 3 cut(s) 837, 872, 1163
SacI GAGCTC 1 cut(s) 275
SaqAI TTAA 4 cut(s) 138, 489, 893, 1079
SatI GCNGC 3 cut(s) 39, 1173, 1229
Sau3AI GATC 2 cut(s) 1111, 1213
Sau96I GGNCC 3 cut(s) 4, 5, 1034
SchI GAGTC 1 cut(s) 1414
ScrFI CCNGG 5 cut(s) 257, 409, 1050, 1092, 1389
SduI GDGCHC 3 cut(s) 8, 275, 1249
SexAI ACCWGGT 1 cut(s) 1387
SfaNI GCATC 3 cut(s) 158, 385, 511
SfcI CTRYAG 1 cut(s) 482
Sfr274I CTCGAG 1 cut(s) 274
SinI GGWCC 1 cut(s) 1034
SlaI CTCGAG 1 cut(s) 274
SmlI CTYRAG 1 cut(s) 274
SmoI CTYRAG 1 cut(s) 274
SsiI CCGC 2 cut(s) 524, 930
SspI AATATT 2 cut(s) 133, 205
SspMI CTAG 2 cut(s) 983, 1417
SstI GAGCTC 1 cut(s) 275
StyD4I CCNGG 5 cut(s) 255, 407, 1048, 1090, 1387
StyI CCWWGG 4 cut(s) 753, 840, 1118, 1355
TaaI ACNGT 4 cut(s) 295, 351, 708, 1288
TaiI ACGT 3 cut(s) 234, 451, 695
TaqI TCGA 3 cut(s) 275, 477, 1241
TfiI GAWTC 4 cut(s) 190, 344, 977, 1331
Tru1I TTAA 4 cut(s) 138, 489, 893, 1079
Tru9I TTAA 4 cut(s) 138, 489, 893, 1079
TscAI CASTG 1 cut(s) 1135
TseFI GTSAC 1 cut(s) 227
TseI GCWGC 3 cut(s) 38, 1172, 1228
Tsp45I GTSAC 1 cut(s) 227
TspDTI ATGAA 8 cut(s) 68, 264, 351, 392, 625, 653, 735, 1086
TspRI CASTG 1 cut(s) 1135
VneI GTGCAC 1 cut(s) 1245
VpaK11BI GGWCC 1 cut(s) 1034
XapI RAATTY 6 cut(s) 440, 560, 618, 632, 730, 1349
XhoI CTCGAG 1 cut(s) 274
XspI CTAG 2 cut(s) 983, 1417
Zsp2I ATGCAT 2 cut(s) 400, 1006
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.