Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001744

Physical Location & Seq

Genomic Coordinates Reverse (-)

18508254 .. 18510555

Gene Structure 2302 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G39900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 738 bp

ATGAGTGATTTCTTCGATGAGGGGAAGCAGCAATTCGCAAGTGTTGCTGATGGGAATGCACCACTTAAGTATCCAAGCTTCAAGCTACCTAAGTCGACTTTCGGAGATACTGGCAAACATAGCGCCATTGATGTTTTCCCACTTCTTGTCAAGGAGGCTGCATTTCCTTTAAAAGAAGACCGTGACATCGATACTTCACTGGTCCAAGACGTGTGTACTATCTCAGTCTTACCTGATGAAGGAAATACAATCCCACAATGTACCTCGCACTTTACTCTCCTGAGCTTCGTCAAGGCTCTGCTTCCATCTAAAAATCAGATGTTGATCGATGCGCAACTGAATTGTCAGAAAACGCAGAACCGCATCAATGTGCTACTGGGAGGCACTGATTCCTATCAATCATGCGTTGTGGACATAAACGTCGAGAAAGGGAATGGTGGTGAGACTGTGACATCTCATGACGAAGTTGTTGCAAGTATGAAATCCGAGAGTGTACATATGCAAAAGGTATTACAGAGACAAGCAAGTTTGAGCACTGATAAAGCTCTCTCCGAACGATGCCACGATGCACCAACAAACAGGTGGAGAAGATACAAGCGTGCCGCTTCATTTGATTCAAGGAAAATCGTCATCCTATTCTCCATCTTATCAAGTGTGGGAACATTGATATTGATCTACCTGACACTGAGAGTGAAGCAAAACGGAGACAACAACAACAACAGCTTCAATCACATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

245

Amino Acids

27.17

Weight (kDa)

7.0

Isoelectric Point (pI)

34.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001744)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G39900
fragaria_vesca	FvH4_1g20820 FvH4_1g20820 FvH4_1g20820 FvH4_1g20820
malus_domestica	MD01G1030700.v1.1 MD15G1323600.v1.1
prunus_persica	Prupe.6G187400_v2.0.a1 Prupe.6G187400_v2.0.a1 Prupe.6G187400_v2.0.a1 Prupe.6G187400_v2.0.a1 Prupe.6G187400_v2.0.a1 Prupe.6G187400_v2.0.a1 Prupe.6G187400_v2.0.a1 Prupe.6G187400_v2.0.a1 Prupe.6G187400_v2.0.a1 Prupe.6G187400_v2.0.a1 Prupe.6G187400_v2.0.a1 Prupe.6G187400_v2.0.a1 Prupe.6G187400_v2.0.a1 Prupe.6G187400_v2.0.a1 Prupe.6G187400_v2.0.a1 Prupe.6G187400_v2.0.a1 Prupe.6G187400_v2.0.a1 Prupe.6G187400_v2.0.a1 Prupe.6G187400_v2.0.a1 Prupe.6G187400_v2.0.a1 Prupe.6G187400_v2.0.a1 Prupe.6G187400_v2.0.a1 Prupe.6G187400_v2.0.a1 Prupe.6G187400_v2.0.a1 Prupe.6G187400_v2.0.a1
pyrus_communis	pycom01g05830 pycom15g28550
rosa_chinensis	RchiOBHm_Chr2g0113431 RchiOBHm_Chr2g0113441
rosa_laevigata	RLG00000018063
rosa_multiflora	Rmu_sc0007415.1_g000016
rosa_roxburghii	Rroxscaffold_2G00129260 Rroxscaffold_2G00129920
rosa_rugosa	Rorug02G0187400 Rorug02G0187500 Rorug02G0187600
rosa_samantha	Rh2AG242000 Rh2BG255800 Rh2CG246100 Rh2DG249900
rosa_wichuraiana	Rw2G018880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	419
Acc16I	TGCGCA	1 cut(s)	333
AccI	GTMKAC	1 cut(s)	95
AciI	CCGC	2 cut(s)	361, 603
AfaI	GTAC	3 cut(s)	217, 262, 495
AfiI	CCNNNNNNNGG	1 cut(s)	239
AflII	CTTAAG	1 cut(s)	65
AflIII	ACRYGT	2 cut(s)	210, 732
AgsI	TTSAA	3 cut(s)	82, 618, 727
AjiI	CACGTC	1 cut(s)	211
AluBI	AGCT	5 cut(s)	78, 85, 285, 545, 723
AluI	AGCT	5 cut(s)	78, 85, 285, 545, 723
Alw21I	GWGCWC	1 cut(s)	536
Alw26I	GTCTC	3 cut(s)	437, 511, 699
ApeKI	GCWGC	2 cut(s)	28, 158
AspLEI	GCGC	2 cut(s)	125, 334
AspS9I	GGNCC	1 cut(s)	202
AsuHPI	GGTGA	1 cut(s)	452
AvaII	GGWCC	1 cut(s)	202
BaeI	ACNNNNGTAYC	4 cut(s)	53, 86, 583, 616
BarI	GAAGNNNNNNTAC	2 cut(s)	62, 94
BbsI	GAAGAC	1 cut(s)	183
Bbv12I	GWGCWC	1 cut(s)	536
BbvI	GCAGC	2 cut(s)	40, 145
BccI	CCATC	3 cut(s)	44, 313, 650
BcgI	CGANNNNNNTGC	2 cut(s)	452, 486
BciVI	GTATCC	1 cut(s)	81
BcoDI	GTCTC	3 cut(s)	437, 511, 699
BfoI	RGCGCY	1 cut(s)	126
BfrI	CTTAAG	1 cut(s)	65
BfuI	GTATCC	1 cut(s)	81
BisI	GCNGC	3 cut(s)	29, 159, 603
BlsI	GCNGC	3 cut(s)	30, 160, 604
Bme18I	GGWCC	1 cut(s)	202
BmgBI	CACGTC	1 cut(s)	211
BmgT120I	GGNCC	1 cut(s)	202
BmrI	ACTGGG	1 cut(s)	386
BmsI	GCATC	4 cut(s)	319, 372, 548, 556
BmuI	ACTGGG	1 cut(s)	386
BpiI	GAAGAC	1 cut(s)	183
Bpu10I	CCTNAGC	1 cut(s)	281
Bsa29I	ATCGAT	2 cut(s)	189, 327
BsaBI	GATNNNNATC	3 cut(s)	323, 393, 671
Bsc4I	CCNNNNNNNGG	1 cut(s)	239
Bse1I	ACTGG	3 cut(s)	115, 204, 381
Bse8I	GATNNNNATC	3 cut(s)	323, 393, 671
BseCI	ATCGAT	2 cut(s)	189, 327
BseGI	GGATG	1 cut(s)	630
BseJI	GATNNNNATC	3 cut(s)	323, 393, 671
BseLI	CCNNNNNNNGG	1 cut(s)	239
BseMII	CTCAG	3 cut(s)	237, 272, 677
BseNI	ACTGG	3 cut(s)	115, 204, 381
BseXI	GCAGC	2 cut(s)	40, 145
BshVI	ATCGAT	2 cut(s)	189, 327
BsiHKAI	GWGCWC	1 cut(s)	536
BslI	CCNNNNNNNGG	1 cut(s)	239
BsmAI	GTCTC	3 cut(s)	437, 511, 699
BsmI	GAATGC	1 cut(s)	61
Bsp1286I	GDGCHC	1 cut(s)	536
Bsp1407I	TGTACA	1 cut(s)	493
Bsp143I	GATC	2 cut(s)	324, 672
BspACI	CCGC	2 cut(s)	361, 603
BspCNI	CTCAG	3 cut(s)	236, 273, 678
BspDI	ATCGAT	2 cut(s)	189, 327
BspHI	TCATGA	1 cut(s)	457
BspTI	CTTAAG	1 cut(s)	65
BsrGI	TGTACA	1 cut(s)	493
BsrI	ACTGG	3 cut(s)	115, 204, 381
BssMI	GATC	2 cut(s)	324, 672
Bst4CI	ACNGT	2 cut(s)	182, 448
BstAFI	CTTAAG	1 cut(s)	65
BstAPI	GCANNNNNTGC	1 cut(s)	44
BstAUI	TGTACA	1 cut(s)	493
BstC8I	GCNNGC	1 cut(s)	600
BstDEI	CTNAG	4 cut(s)	90, 223, 281, 686
BstENI	CCTNNNNNAGG	1 cut(s)	237
BstF5I	GGATG	1 cut(s)	630
BstH2I	RGCGCY	1 cut(s)	126
BstHHI	GCGC	2 cut(s)	125, 334
BstKTI	GATC	2 cut(s)	327, 675
BstMAI	GTCTC	3 cut(s)	437, 511, 699
BstMBI	GATC	2 cut(s)	324, 672
BstMWI	GCNNNNNNNGC	2 cut(s)	44, 120
BstNSI	RCATGY	1 cut(s)	736
BstV1I	GCAGC	2 cut(s)	40, 145
BstV2I	GAAGAC	1 cut(s)	183
Bsu15I	ATCGAT	2 cut(s)	189, 327
BsuI	GTATCC	1 cut(s)	81
BsuTUI	ATCGAT	2 cut(s)	189, 327
BtrI	CACGTC	1 cut(s)	211
BtsCI	GGATG	1 cut(s)	630
BtsIMutI	CAGTG	4 cut(s)	197, 384, 534, 683
Cac8I	GCNNGC	1 cut(s)	600
CciI	TCATGA	1 cut(s)	457
CfoI	GCGC	2 cut(s)	125, 334
Cfr13I	GGNCC	1 cut(s)	202
ClaI	ATCGAT	2 cut(s)	189, 327
Csp6I	GTAC	3 cut(s)	216, 261, 494
CviAII	CATG	3 cut(s)	402, 458, 733
CviJI	RGCY	7 cut(s)	78, 85, 158, 285, 296, 545, 723
CviKI_1	RGCY	7 cut(s)	78, 85, 158, 285, 296, 545, 723
CviQI	GTAC	3 cut(s)	216, 261, 494
DdeI	CTNAG	4 cut(s)	90, 223, 281, 686
DpnI	GATC	2 cut(s)	326, 674
DpnII	GATC	2 cut(s)	324, 672
DraI	TTTAAA	1 cut(s)	171
DrdI	GACNNNNNNGTC	1 cut(s)	419
DseDI	GACNNNNNNGTC	1 cut(s)	419
Eco47I	GGWCC	1 cut(s)	202
EcoNI	CCTNNNNNAGG	1 cut(s)	237
FaeI	CATG	3 cut(s)	405, 461, 736
FaiI	YATR	8 cut(s)	120, 403, 416, 459, 479, 498, 500, 734
FatI	CATG	3 cut(s)	401, 457, 732
FauNDI	CATATG	1 cut(s)	498
FblI	GTMKAC	1 cut(s)	95
Fnu4HI	GCNGC	3 cut(s)	29, 159, 603
FokI	GGATG	1 cut(s)	617
Fsp4HI	GCNGC	3 cut(s)	29, 159, 603
FspI	TGCGCA	1 cut(s)	333
GlaI	GCGC	2 cut(s)	124, 333
GluI	GCNGC	3 cut(s)	29, 159, 603
HaeII	RGCGCY	1 cut(s)	126
HhaI	GCGC	2 cut(s)	125, 334
Hin1II	CATG	3 cut(s)	405, 461, 736
Hin6I	GCGC	2 cut(s)	123, 332
HinP1I	GCGC	2 cut(s)	123, 332
HincII	GTYRAC	1 cut(s)	96
HindII	GTYRAC	1 cut(s)	96
HindIII	AAGCTT	1 cut(s)	76
HinfI	GANTC	2 cut(s)	389, 614
HphI	GGTGA	1 cut(s)	452
Hpy166II	GTNNAC	4 cut(s)	96, 216, 412, 494
Hpy188I	TCNGA	5 cut(s)	104, 318, 348, 487, 553
Hpy188III	TCNNGA	3 cut(s)	280, 424, 458
Hpy8I	GTNNAC	4 cut(s)	96, 216, 412, 494
Hpy99I	CGWCG	1 cut(s)	425
HpyAV	CCTTC	1 cut(s)	233
HpyCH4III	ACNGT	2 cut(s)	182, 448
HpyCH4IV	ACGT	2 cut(s)	210, 420
HpyCH4V	TGCA	5 cut(s)	59, 161, 473, 502, 569
HpyF10VI	GCNNNNNNNGC	2 cut(s)	44, 120
HpyF3I	CTNAG	4 cut(s)	90, 223, 281, 686
HpySE526I	ACGT	2 cut(s)	210, 420
Hsp92II	CATG	3 cut(s)	405, 461, 736
HspAI	GCGC	2 cut(s)	123, 332
Kzo9I	GATC	2 cut(s)	324, 672
LpnPI	CCDG	7 cut(s)	96, 185, 246, 293, 362, 565, 692
Lsp1109I	GCAGC	2 cut(s)	40, 145
LweI	GCATC	4 cut(s)	319, 372, 548, 556
MaeII	ACGT	2 cut(s)	210, 420
MaeIII	GTNAC	2 cut(s)	182, 448
MalI	GATC	2 cut(s)	326, 674
MboI	GATC	2 cut(s)	324, 672
MboII	GAAGA	3 cut(s)	4, 188, 600
MhlI	GDGCHC	1 cut(s)	536
MluCI	AATT	2 cut(s)	32, 340
MnlI	CCTC	4 cut(s)	13, 148, 274, 374
MseI	TTAA	2 cut(s)	66, 170
MslI	CAYNNNNRTG	1 cut(s)	368
MspCI	CTTAAG	1 cut(s)	65
Mva1269I	GAATGC	1 cut(s)	61
MwoI	GCNNNNNNNGC	2 cut(s)	44, 120
NdeI	CATATG	1 cut(s)	498
NdeII	GATC	2 cut(s)	324, 672
NlaIII	CATG	3 cut(s)	405, 461, 736
NmuCI	GTSAC	2 cut(s)	182, 448
NsbI	TGCGCA	1 cut(s)	333
NspI	RCATGY	1 cut(s)	736
PagI	TCATGA	1 cut(s)	457
PciI	ACATGT	1 cut(s)	732
PctI	GAATGC	1 cut(s)	61
PfeI	GAWTC	2 cut(s)	389, 614
PkrI	GCNGC	3 cut(s)	30, 160, 604
PscI	ACATGT	1 cut(s)	732
PspPI	GGNCC	1 cut(s)	202
RsaI	GTAC	3 cut(s)	217, 262, 495
RsaNI	GTAC	3 cut(s)	216, 261, 494
RseI	CAYNNNNRTG	1 cut(s)	368
SalI	GTCGAC	1 cut(s)	94
SaqAI	TTAA	2 cut(s)	66, 170
SatI	GCNGC	3 cut(s)	29, 159, 603
Sau3AI	GATC	2 cut(s)	324, 672
Sau96I	GGNCC	1 cut(s)	202
SduI	GDGCHC	1 cut(s)	536
SfaNI	GCATC	4 cut(s)	319, 372, 548, 556
SinI	GGWCC	1 cut(s)	202
SmiMI	CAYNNNNRTG	1 cut(s)	368
SmlI	CTYRAG	1 cut(s)	65
SmoI	CTYRAG	1 cut(s)	65
Sse9I	AATT	2 cut(s)	32, 340
SsiI	CCGC	2 cut(s)	361, 603
TaaI	ACNGT	2 cut(s)	182, 448
TaiI	ACGT	2 cut(s)	213, 423
TaqI	TCGA	5 cut(s)	15, 95, 189, 327, 423
TasI	AATT	2 cut(s)	32, 340
TatI	WGTACW	2 cut(s)	215, 493
TauI	GCSGC	1 cut(s)	605
TfiI	GAWTC	2 cut(s)	389, 614
Tru1I	TTAA	2 cut(s)	66, 170
Tru9I	TTAA	2 cut(s)	66, 170
TscAI	CASTG	4 cut(s)	204, 391, 541, 690
TseFI	GTSAC	2 cut(s)	182, 448
TseI	GCWGC	2 cut(s)	28, 158
Tsp45I	GTSAC	2 cut(s)	182, 448
TspDTI	ATGAA	3 cut(s)	252, 494, 597
TspGWI	ACGGA	1 cut(s)	717
TspRI	CASTG	4 cut(s)	204, 391, 541, 690
Vha464I	CTTAAG	1 cut(s)	65
VpaK11BI	GGWCC	1 cut(s)	202
XagI	CCTNNNNNAGG	1 cut(s)	237
XceI	RCATGY	1 cut(s)	736
XcmI	CCANNNNNNNNNTGG	1 cut(s)	579
XmiI	GTMKAC	1 cut(s)	95

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.