Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0001744

Physical Location & Seq

Genomic Coordinates Reverse (-)

12971754 .. 12976553

Gene Structure 4800 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g20820.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 774 bp

ATGGAACCCAATCTCCCTGCAATGTCTGCTACTCCCTCAAATGATGAGGAAAAATCTTACATTCATGGAATGTCTGATGGAATACCTGCTAGCTGTCCAAGTGTTAAGTTTCTAAAGTCAGCTTTTGATGAGGTCGACCAGCATTGCTCTCTAGATATATTGCCTATACTTTTTGAGGAGGCTCAGGTTCCAACAAAGTTAAAATATCCCTTCCACAGATCACATGTCCCAGAAATATTTAACATGTCAATGCTGCCCAAGGAAGGCAATAGTCCACAATGTGGTTTCCAATTGGCCTTGTTGAGCTTCCTAAAAGTTTATAATCCATTTAAAAGTCAGATGTGCATGGATGCACAGTTGACTTGCCACAACTGCAATGATTCACAACAGAACATTGGAGATGCTCATCCCCCATTGATCATGGAGATAGATATTGAGAAGGAATATAATCAAGCACGGGACTCTGAAGAGGAAGCTGTTGAAAATTTGAAAAGTGGTGGTGTACTTAGGGTGTTGCAGAGACAGACAAGCCCAAAAGTAGGTGGGAAACTCATGCAAATACTATTCGACCATGGCACTTCAAAAGACAACCCAGTGACTGAAAAAACTTATGAAACACCAAATAACCGGTCGAGAAGATGCAAACGCAGTGCCTCATTTGATTCAAGAAAAGTCGTCCTCCTATTCTCAGTCCTATCAAGTTTGGGAACATTGGTGCTGATATGTCTAACACTGAGAGTTCGGCTAAGTGGTGATGGTCTCGTTCTTGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

258

Amino Acids

28.68

Weight (kDa)

5.99

Isoelectric Point (pI)

62.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001744)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G39900
fragaria_vesca	FvH4_1g20820 FvH4_1g20820 FvH4_1g20820 FvH4_1g20820
malus_domestica	MD01G1030700.v1.1 MD15G1323600.v1.1
prunus_persica	Prupe.6G187400_v2.0.a1 Prupe.6G187400_v2.0.a1 Prupe.6G187400_v2.0.a1 Prupe.6G187400_v2.0.a1 Prupe.6G187400_v2.0.a1 Prupe.6G187400_v2.0.a1 Prupe.6G187400_v2.0.a1 Prupe.6G187400_v2.0.a1 Prupe.6G187400_v2.0.a1 Prupe.6G187400_v2.0.a1 Prupe.6G187400_v2.0.a1 Prupe.6G187400_v2.0.a1 Prupe.6G187400_v2.0.a1 Prupe.6G187400_v2.0.a1 Prupe.6G187400_v2.0.a1 Prupe.6G187400_v2.0.a1 Prupe.6G187400_v2.0.a1 Prupe.6G187400_v2.0.a1 Prupe.6G187400_v2.0.a1 Prupe.6G187400_v2.0.a1 Prupe.6G187400_v2.0.a1 Prupe.6G187400_v2.0.a1 Prupe.6G187400_v2.0.a1 Prupe.6G187400_v2.0.a1 Prupe.6G187400_v2.0.a1
pyrus_communis	pycom01g05830 pycom15g28550
rosa_chinensis	RchiOBHm_Chr2g0113431 RchiOBHm_Chr2g0113441
rosa_laevigata	RLG00000018063
rosa_multiflora	Rmu_sc0007415.1_g000016
rosa_roxburghii	Rroxscaffold_2G00129260 Rroxscaffold_2G00129920
rosa_rugosa	Rorug02G0187400 Rorug02G0187500 Rorug02G0187600
rosa_samantha	Rh2AG242000 Rh2BG255800 Rh2CG246100 Rh2DG249900
rosa_wichuraiana	Rw2G018880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	321
Acc36I	ACCTGC	1 cut(s)	94
AccB7I	CCANNNNNTGG	1 cut(s)	281
AccI	GTMKAC	1 cut(s)	135
AcsI	RAATTY	1 cut(s)	484
AcuI	CTGAAG	1 cut(s)	486
AdeI	CACNNNGTG	1 cut(s)	281
AfaI	GTAC	1 cut(s)	504
AfiI	CCNNNNNNNGG	3 cut(s)	263, 281, 539
AflIII	ACRYGT	2 cut(s)	223, 243
AgeI	ACCGGT	1 cut(s)	627
AgsI	TTSAA	4 cut(s)	482, 490, 582, 666
AloI	GAACNNNNNNTCC	1 cut(s)	29
AluBI	AGCT	4 cut(s)	93, 122, 306, 476
AluI	AGCT	4 cut(s)	93, 122, 306, 476
Alw26I	GTCTC	2 cut(s)	514, 764
AlwNI	CAGNNNCTG	1 cut(s)	599
AoxI	GGCC	1 cut(s)	294
ApeKI	GCWGC	1 cut(s)	253
ApoI	RAATTY	1 cut(s)	484
ArsI	GACNNNNNNTTYG	2 cut(s)	614, 646
AsiGI	ACCGGT	1 cut(s)	627
AsuHPI	GGTGA	1 cut(s)	764
AsuNHI	GCTAGC	1 cut(s)	89
BbvI	GCAGC	1 cut(s)	240
BccI	CCATC	2 cut(s)	71, 749
BclI	TGATCA	1 cut(s)	417
BcoDI	GTCTC	2 cut(s)	514, 764
BfaI	CTAG	2 cut(s)	90, 152
BfuAI	ACCTGC	1 cut(s)	94
BisI	GCNGC	1 cut(s)	254
BlsI	GCNGC	1 cut(s)	255
BmiI	GGNNCC	2 cut(s)	6, 189
BmrI	ACTGGG	1 cut(s)	587
BmsI	GCATC	3 cut(s)	340, 391, 629
BmtI	GCTAGC	1 cut(s)	93
BmuI	ACTGGG	1 cut(s)	587
Bpu10I	CCTNAGC	1 cut(s)	183
BsaBI	GATNNNNATC	1 cut(s)	405
BsaI	GGTCTC	1 cut(s)	764
BsaJI	CCNNGG	2 cut(s)	258, 571
BsaWI	WCCGGW	1 cut(s)	627
BsaXI	ACNNNNNCTCC	1 cut(s)	27
Bsc4I	CCNNNNNNNGG	3 cut(s)	263, 281, 539
Bse118I	RCCGGY	1 cut(s)	627
Bse1I	ACTGG	1 cut(s)	593
Bse3DI	GCAATG	3 cut(s)	27, 142, 382
Bse8I	GATNNNNATC	1 cut(s)	405
BseDI	CCNNGG	2 cut(s)	258, 571
BseGI	GGATG	2 cut(s)	355, 406
BseJI	GATNNNNATC	1 cut(s)	405
BseLI	CCNNNNNNNGG	3 cut(s)	263, 281, 539
BseMI	GCAATG	3 cut(s)	27, 142, 382
BseMII	CTCAG	3 cut(s)	197, 702, 725
BseNI	ACTGG	1 cut(s)	593
BseRI	GAGGAG	1 cut(s)	191
BseXI	GCAGC	1 cut(s)	240
Bsh1285I	CGRYCG	1 cut(s)	632
BshFI	GGCC	1 cut(s)	296
BshTI	ACCGGT	1 cut(s)	627
BsiEI	CGRYCG	1 cut(s)	632
BsiSI	CCGG	1 cut(s)	628
BslFI	GGGAC	2 cut(s)	212, 473
BslI	CCNNNNNNNGG	3 cut(s)	263, 281, 539
BsmAI	GTCTC	2 cut(s)	514, 764
BsmFI	GGGAC	2 cut(s)	212, 473
BsnI	GGCC	1 cut(s)	296
Bso31I	GGTCTC	1 cut(s)	764
Bsp143I	GATC	2 cut(s)	218, 417
Bsp19I	CCATGG	1 cut(s)	571
BspANI	GGCC	1 cut(s)	296
BspCNI	CTCAG	3 cut(s)	196, 701, 726
BspLI	GGNNCC	2 cut(s)	6, 189
BspMI	ACCTGC	1 cut(s)	94
BspOI	GCTAGC	1 cut(s)	93
BspTNI	GGTCTC	1 cut(s)	764
BsrDI	GCAATG	3 cut(s)	27, 142, 382
BsrFI	RCCGGY	1 cut(s)	627
BsrI	ACTGG	1 cut(s)	593
BssAI	RCCGGY	1 cut(s)	627
BssECI	CCNNGG	2 cut(s)	258, 571
BssMI	GATC	2 cut(s)	218, 417
BssT1I	CCWWGG	2 cut(s)	258, 571
Bst4CI	ACNGT	1 cut(s)	357
Bst6I	CTCTTC	1 cut(s)	462
BstAPI	GCANNNNNTGC	1 cut(s)	26
BstC8I	GCNNGC	1 cut(s)	91
BstDEI	CTNAG	5 cut(s)	183, 506, 688, 734, 746
BstDSI	CCRYGG	1 cut(s)	571
BstF5I	GGATG	2 cut(s)	355, 406
BstKTI	GATC	2 cut(s)	221, 420
BstMAI	GTCTC	2 cut(s)	514, 764
BstMBI	GATC	2 cut(s)	218, 417
BstMCI	CGRYCG	1 cut(s)	632
BstMWI	GCNNNNNNNGC	2 cut(s)	26, 372
BstNSI	RCATGY	2 cut(s)	227, 247
BstV1I	GCAGC	1 cut(s)	240
BsuRI	GGCC	1 cut(s)	296
BtgI	CCRYGG	1 cut(s)	571
BtsCI	GGATG	2 cut(s)	355, 406
BtsI	GCAGTG	1 cut(s)	655
BtsIMutI	CAGTG	3 cut(s)	600, 655, 731
BveI	ACCTGC	1 cut(s)	94
Cac8I	GCNNGC	1 cut(s)	91
CaiI	CAGNNNCTG	1 cut(s)	599
Cfr10I	RCCGGY	1 cut(s)	627
Csp6I	GTAC	1 cut(s)	503
CspAI	ACCGGT	1 cut(s)	627
CviAII	CATG	7 cut(s)	65, 224, 244, 346, 421, 553, 572
CviJI	RGCY	8 cut(s)	93, 122, 182, 296, 306, 476, 531, 745
CviKI_1	RGCY	8 cut(s)	93, 122, 182, 296, 306, 476, 531, 745
CviQI	GTAC	1 cut(s)	503
DdeI	CTNAG	5 cut(s)	183, 506, 688, 734, 746
DpnI	GATC	2 cut(s)	220, 419
DpnII	GATC	2 cut(s)	218, 417
DraI	TTTAAA	1 cut(s)	331
DraIII	CACNNNGTG	1 cut(s)	281
Eam1104I	CTCTTC	1 cut(s)	462
EarI	CTCTTC	1 cut(s)	462
Eco130I	CCWWGG	2 cut(s)	258, 571
Eco31I	GGTCTC	1 cut(s)	764
Eco57I	CTGAAG	1 cut(s)	486
EcoT14I	CCWWGG	2 cut(s)	258, 571
ErhI	CCWWGG	2 cut(s)	258, 571
FaeI	CATG	7 cut(s)	68, 227, 247, 349, 424, 556, 575
FaqI	GGGAC	2 cut(s)	212, 473
FatI	CATG	7 cut(s)	64, 223, 243, 345, 420, 552, 571
FbaI	TGATCA	1 cut(s)	417
FblI	GTMKAC	1 cut(s)	135
Fnu4HI	GCNGC	1 cut(s)	254
FokI	GGATG	2 cut(s)	362, 393
Fsp4HI	GCNGC	1 cut(s)	254
FspBI	CTAG	2 cut(s)	90, 152
GluI	GCNGC	1 cut(s)	254
HaeIII	GGCC	1 cut(s)	296
HapII	CCGG	1 cut(s)	628
Hin1II	CATG	7 cut(s)	68, 227, 247, 349, 424, 556, 575
HincII	GTYRAC	2 cut(s)	136, 360
HindII	GTYRAC	2 cut(s)	136, 360
HinfI	GANTC	3 cut(s)	380, 461, 662
HpaII	CCGG	1 cut(s)	628
HphI	GGTGA	1 cut(s)	764
Hpy166II	GTNNAC	4 cut(s)	136, 275, 360, 503
Hpy188I	TCNGA	3 cut(s)	76, 339, 466
Hpy188III	TCNNGA	3 cut(s)	152, 633, 666
Hpy8I	GTNNAC	4 cut(s)	136, 275, 360, 503
HpyAV	CCTTC	3 cut(s)	220, 257, 433
HpyCH4III	ACNGT	1 cut(s)	357
HpyCH4V	TGCA	7 cut(s)	20, 345, 353, 375, 517, 556, 642
HpyF10VI	GCNNNNNNNGC	2 cut(s)	26, 372
HpyF3I	CTNAG	5 cut(s)	183, 506, 688, 734, 746
Hsp92II	CATG	7 cut(s)	68, 227, 247, 349, 424, 556, 575
Ksp22I	TGATCA	1 cut(s)	417
Kzo9I	GATC	2 cut(s)	218, 417
LpnPI	CCDG	7 cut(s)	30, 99, 152, 170, 243, 606, 641
Lsp1109I	GCAGC	1 cut(s)	240
LweI	GCATC	3 cut(s)	340, 391, 629
MaeI	CTAG	2 cut(s)	90, 152
MaeIII	GTNAC	1 cut(s)	595
MalI	GATC	2 cut(s)	220, 419
MboI	GATC	2 cut(s)	218, 417
MboII	GAAGA	2 cut(s)	479, 648
MfeI	CAATTG	1 cut(s)	290
MluCI	AATT	2 cut(s)	290, 484
MlyI	GAGTC	1 cut(s)	455
MmeI	TCCRAC	1 cut(s)	215
MnlI	CCTC	8 cut(s)	40, 46, 124, 169, 172, 463, 664, 689
MseI	TTAA	4 cut(s)	105, 200, 240, 330
MslI	CAYNNNNRTG	1 cut(s)	248
MspI	CCGG	1 cut(s)	628
MunI	CAATTG	1 cut(s)	290
MwoI	GCNNNNNNNGC	2 cut(s)	26, 372
NcoI	CCATGG	1 cut(s)	571
NdeII	GATC	2 cut(s)	218, 417
NheI	GCTAGC	1 cut(s)	89
NlaIII	CATG	7 cut(s)	68, 227, 247, 349, 424, 556, 575
NlaIV	GGNNCC	2 cut(s)	6, 189
NmuCI	GTSAC	1 cut(s)	595
NspI	RCATGY	2 cut(s)	227, 247
PciI	ACATGT	2 cut(s)	223, 243
PfeI	GAWTC	2 cut(s)	380, 662
PflMI	CCANNNNNTGG	1 cut(s)	281
PinAI	ACCGGT	1 cut(s)	627
PkrI	GCNGC	1 cut(s)	255
PleI	GAGTC	1 cut(s)	455
PpsI	GAGTC	1 cut(s)	455
PscI	ACATGT	2 cut(s)	223, 243
PsiI	TTATAA	1 cut(s)	321
PspN4I	GGNNCC	2 cut(s)	6, 189
PstNI	CAGNNNCTG	1 cut(s)	599
RsaI	GTAC	1 cut(s)	504
RsaNI	GTAC	1 cut(s)	503
RseI	CAYNNNNRTG	1 cut(s)	248
SalI	GTCGAC	1 cut(s)	134
SaqAI	TTAA	4 cut(s)	105, 200, 240, 330
SatI	GCNGC	1 cut(s)	254
Sau3AI	GATC	2 cut(s)	218, 417
SchI	GAGTC	1 cut(s)	455
SetI	ASST	8 cut(s)	88, 95, 124, 135, 189, 308, 478, 544
SfaNI	GCATC	3 cut(s)	340, 391, 629
SmiMI	CAYNNNNRTG	1 cut(s)	248
Sse9I	AATT	2 cut(s)	290, 484
SspI	AATATT	1 cut(s)	237
SspMI	CTAG	2 cut(s)	90, 152
StyI	CCWWGG	2 cut(s)	258, 571
TaaI	ACNGT	1 cut(s)	357
TaqI	TCGA	3 cut(s)	135, 567, 632
TasI	AATT	2 cut(s)	290, 484
TatI	WGTACW	1 cut(s)	502
TfiI	GAWTC	2 cut(s)	380, 662
Tru1I	TTAA	4 cut(s)	105, 200, 240, 330
Tru9I	TTAA	4 cut(s)	105, 200, 240, 330
TscAI	CASTG	3 cut(s)	600, 655, 738
TseFI	GTSAC	1 cut(s)	595
TseI	GCWGC	1 cut(s)	253
Tsp45I	GTSAC	1 cut(s)	595
TspDTI	ATGAA	2 cut(s)	53, 627
TspRI	CASTG	3 cut(s)	600, 655, 738
Van91I	CCANNNNNTGG	1 cut(s)	281
XapI	RAATTY	1 cut(s)	484
XbaI	TCTAGA	1 cut(s)	151
XceI	RCATGY	2 cut(s)	227, 247
XmiI	GTMKAC	1 cut(s)	135
XspI	CTAG	2 cut(s)	90, 152

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.