Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007415.1

Orthogroup ID

OG0001744

Physical Location & Seq

Genomic Coordinates Reverse (-)

85407 .. 88250

Gene Structure 2844 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007415.1_g000016.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

atggaacccaatctctctgcaatggctgctaatccctgcgatgagggaaaaccttacattcatggaatttctgatggaatacctgctggctgtccaagtgtgaagttactaaagtcagcgtttgatgaggttgaccagcattgctctctagatattttgccaattctttttgaggaggctcagcttccagcaaagttaaaatatccctttaacagatcacatatgtgcatggatgcacaattgacttgtcagaactgtgatgaattacaacaaaacaatggagatgctcatcccccgttcatcatggagatagctattgagaaggaatataatcaagcaccagaatctgaagaggaagctgtcgaaagtttgaaaagtggtggagaacttagggtgttgcagagacagatgagcccaaaagtaggtgggaaactcatgcaactactattcgaccatggcacttcaaaaggtatttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

158

Amino Acids

17.4

Weight (kDa)

4.78

Isoelectric Point (pI)

51.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001744)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G39900
fragaria_vesca	FvH4_1g20820 FvH4_1g20820 FvH4_1g20820 FvH4_1g20820
malus_domestica	MD01G1030700.v1.1 MD15G1323600.v1.1
prunus_persica	Prupe.6G187400_v2.0.a1 Prupe.6G187400_v2.0.a1 Prupe.6G187400_v2.0.a1 Prupe.6G187400_v2.0.a1 Prupe.6G187400_v2.0.a1 Prupe.6G187400_v2.0.a1 Prupe.6G187400_v2.0.a1 Prupe.6G187400_v2.0.a1 Prupe.6G187400_v2.0.a1 Prupe.6G187400_v2.0.a1 Prupe.6G187400_v2.0.a1 Prupe.6G187400_v2.0.a1 Prupe.6G187400_v2.0.a1 Prupe.6G187400_v2.0.a1 Prupe.6G187400_v2.0.a1 Prupe.6G187400_v2.0.a1 Prupe.6G187400_v2.0.a1 Prupe.6G187400_v2.0.a1 Prupe.6G187400_v2.0.a1 Prupe.6G187400_v2.0.a1 Prupe.6G187400_v2.0.a1 Prupe.6G187400_v2.0.a1 Prupe.6G187400_v2.0.a1 Prupe.6G187400_v2.0.a1 Prupe.6G187400_v2.0.a1
pyrus_communis	pycom01g05830 pycom15g28550
rosa_chinensis	RchiOBHm_Chr2g0113431 RchiOBHm_Chr2g0113441
rosa_laevigata	RLG00000018063
rosa_multiflora	Rmu_sc0007415.1_g000016
rosa_roxburghii	Rroxscaffold_2G00129260 Rroxscaffold_2G00129920
rosa_rugosa	Rorug02G0187400 Rorug02G0187500 Rorug02G0187600
rosa_samantha	Rh2AG242000 Rh2BG255800 Rh2CG246100 Rh2DG249900
rosa_wichuraiana	Rw2G018880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	91
AcsI	RAATTY	1 cut(s)	66
AcuI	CTGAAG	1 cut(s)	369
AfiI	CCNNNNNNNGG	1 cut(s)	422
AgsI	TTSAA	2 cut(s)	373, 465
AleI	CACNNNNGTG	1 cut(s)	223
AluBI	AGCT	3 cut(s)	184, 314, 359
AluI	AGCT	3 cut(s)	184, 314, 359
Alw26I	GTCTC	1 cut(s)	397
AlwNI	CAGNNNCTG	1 cut(s)	347
ApeKI	GCWGC	1 cut(s)	26
ApoI	RAATTY	1 cut(s)	66
BanII	GRGCYC	1 cut(s)	416
BbvI	GCAGC	1 cut(s)	13
BccI	CCATC	1 cut(s)	68
BcoDI	GTCTC	1 cut(s)	397
BfaI	CTAG	1 cut(s)	149
BfuAI	ACCTGC	1 cut(s)	91
BisI	GCNGC	1 cut(s)	27
BlpI	GCTNAGC	1 cut(s)	180
BlsI	GCNGC	1 cut(s)	28
BmiI	GGNNCC	1 cut(s)	6
BmsI	GCATC	2 cut(s)	223, 274
Bpu1102I	GCTNAGC	1 cut(s)	180
BsaBI	GATNNNNATC	1 cut(s)	288
BsaJI	CCNNGG	1 cut(s)	454
Bsc4I	CCNNNNNNNGG	1 cut(s)	422
Bse3DI	GCAATG	2 cut(s)	27, 139
Bse8I	GATNNNNATC	1 cut(s)	288
BseDI	CCNNGG	1 cut(s)	454
BseGI	GGATG	2 cut(s)	238, 289
BseJI	GATNNNNATC	1 cut(s)	288
BseLI	CCNNNNNNNGG	1 cut(s)	422
BseMI	GCAATG	2 cut(s)	27, 139
BseMII	CTCAG	1 cut(s)	194
BseRI	GAGGAG	1 cut(s)	188
BseXI	GCAGC	1 cut(s)	13
BslI	CCNNNNNNNGG	1 cut(s)	422
BsmAI	GTCTC	1 cut(s)	397
Bsp1286I	GDGCHC	1 cut(s)	416
Bsp143I	GATC	1 cut(s)	215
Bsp1720I	GCTNAGC	1 cut(s)	180
Bsp19I	CCATGG	1 cut(s)	454
BspCNI	CTCAG	1 cut(s)	193
BspLI	GGNNCC	1 cut(s)	6
BspMI	ACCTGC	1 cut(s)	91
BsrDI	GCAATG	2 cut(s)	27, 139
BssECI	CCNNGG	1 cut(s)	454
BssMI	GATC	1 cut(s)	215
BssT1I	CCWWGG	1 cut(s)	454
Bst4CI	ACNGT	1 cut(s)	257
Bst6I	CTCTTC	1 cut(s)	345
BstAPI	GCANNNNNTGC	1 cut(s)	26
BstC8I	GCNNGC	1 cut(s)	88
BstDEI	CTNAG	2 cut(s)	180, 389
BstDSI	CCRYGG	1 cut(s)	454
BstF5I	GGATG	2 cut(s)	238, 289
BstKTI	GATC	1 cut(s)	218
BstMAI	GTCTC	1 cut(s)	397
BstMBI	GATC	1 cut(s)	215
BstMWI	GCNNNNNNNGC	1 cut(s)	26
BstV1I	GCAGC	1 cut(s)	13
BtgI	CCRYGG	1 cut(s)	454
BtgZI	GCGATG	1 cut(s)	54
BtsCI	GGATG	2 cut(s)	238, 289
BveI	ACCTGC	1 cut(s)	91
Cac8I	GCNNGC	1 cut(s)	88
CaiI	CAGNNNCTG	1 cut(s)	347
CviAII	CATG	5 cut(s)	62, 229, 304, 436, 455
CviJI	RGCY	7 cut(s)	26, 90, 179, 184, 314, 359, 414
CviKI_1	RGCY	7 cut(s)	26, 90, 179, 184, 314, 359, 414
DdeI	CTNAG	2 cut(s)	180, 389
DpnI	GATC	1 cut(s)	217
DpnII	GATC	1 cut(s)	215
Eam1104I	CTCTTC	1 cut(s)	345
EarI	CTCTTC	1 cut(s)	345
Eco130I	CCWWGG	1 cut(s)	454
Eco24I	GRGCYC	1 cut(s)	416
Eco57I	CTGAAG	1 cut(s)	369
EcoT14I	CCWWGG	1 cut(s)	454
EcoT38I	GRGCYC	1 cut(s)	416
ErhI	CCWWGG	1 cut(s)	454
FaeI	CATG	5 cut(s)	65, 232, 307, 439, 458
FaiI	YATR	8 cut(s)	63, 222, 224, 230, 305, 330, 437, 456
FatI	CATG	5 cut(s)	61, 228, 303, 435, 454
FauNDI	CATATG	1 cut(s)	222
Fnu4HI	GCNGC	1 cut(s)	27
FokI	GGATG	2 cut(s)	245, 276
FriOI	GRGCYC	1 cut(s)	416
Fsp4HI	GCNGC	1 cut(s)	27
FspBI	CTAG	1 cut(s)	149
GluI	GCNGC	1 cut(s)	27
Hin1II	CATG	5 cut(s)	65, 232, 307, 439, 458
HincII	GTYRAC	1 cut(s)	133
HindII	GTYRAC	1 cut(s)	133
HinfI	GANTC	1 cut(s)	344
Hpy166II	GTNNAC	1 cut(s)	133
Hpy188I	TCNGA	3 cut(s)	73, 252, 349
Hpy188III	TCNNGA	1 cut(s)	149
Hpy8I	GTNNAC	1 cut(s)	133
HpyAV	CCTTC	1 cut(s)	316
HpyCH4III	ACNGT	1 cut(s)	257
HpyCH4V	TGCA	5 cut(s)	20, 228, 236, 400, 439
HpyF10VI	GCNNNNNNNGC	1 cut(s)	26
HpyF3I	CTNAG	2 cut(s)	180, 389
Hsp92II	CATG	5 cut(s)	65, 232, 307, 439, 458
Kzo9I	GATC	1 cut(s)	215
LpnPI	CCDG	6 cut(s)	49, 72, 96, 149, 201, 354
Lsp1109I	GCAGC	1 cut(s)	13
LweI	GCATC	2 cut(s)	223, 274
MaeI	CTAG	1 cut(s)	149
MaeIII	GTNAC	1 cut(s)	105
MalI	GATC	1 cut(s)	217
MboI	GATC	1 cut(s)	215
MboII	GAAGA	1 cut(s)	362
MfeI	CAATTG	1 cut(s)	239
MhlI	GDGCHC	1 cut(s)	416
MluCI	AATT	4 cut(s)	66, 162, 239, 263
MnlI	CCTC	5 cut(s)	37, 121, 166, 169, 346
MseI	TTAA	3 cut(s)	197, 210, 475
MslI	CAYNNNNRTG	1 cut(s)	223
MunI	CAATTG	1 cut(s)	239
MwoI	GCNNNNNNNGC	1 cut(s)	26
NcoI	CCATGG	1 cut(s)	454
NdeI	CATATG	1 cut(s)	222
NdeII	GATC	1 cut(s)	215
NlaIII	CATG	5 cut(s)	65, 232, 307, 439, 458
NlaIV	GGNNCC	1 cut(s)	6
OliI	CACNNNNGTG	1 cut(s)	223
PfeI	GAWTC	1 cut(s)	344
PkrI	GCNGC	1 cut(s)	28
PspN4I	GGNNCC	1 cut(s)	6
PstNI	CAGNNNCTG	1 cut(s)	347
RseI	CAYNNNNRTG	1 cut(s)	223
SaqAI	TTAA	3 cut(s)	197, 210, 475
SatI	GCNGC	1 cut(s)	27
Sau3AI	GATC	1 cut(s)	215
SduI	GDGCHC	1 cut(s)	416
SetI	ASST	8 cut(s)	55, 85, 132, 186, 316, 361, 427, 472
SfaNI	GCATC	2 cut(s)	223, 274
SmiMI	CAYNNNNRTG	1 cut(s)	223
Sse9I	AATT	4 cut(s)	66, 162, 239, 263
SspMI	CTAG	1 cut(s)	149
StyI	CCWWGG	1 cut(s)	454
TaaI	ACNGT	1 cut(s)	257
TaqI	TCGA	2 cut(s)	363, 450
TasI	AATT	4 cut(s)	66, 162, 239, 263
TfiI	GAWTC	1 cut(s)	344
Tru1I	TTAA	3 cut(s)	197, 210, 475
Tru9I	TTAA	3 cut(s)	197, 210, 475
TseI	GCWGC	1 cut(s)	26
TspDTI	ATGAA	3 cut(s)	50, 276, 289
XapI	RAATTY	1 cut(s)	66
XbaI	TCTAGA	1 cut(s)	148
XspI	CTAG	1 cut(s)	149

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.