RchiOBHm_Chr2g0113441

isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0001744
Physical Location & Seq
Reverse (-)
25584005 .. 25588997
4993 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ48679

Sequence Viewer

Length: 771 bp
ATGGAACCCAATCTCTCTGCAATGGCTGCTAATCCCTCCGATGAGGGAAAACCTTACATTCACGGAATTTCTGATGGAATACCTGCTAGCTGTCCAAGTGTTAAGTTACTAAAGTCAGCGTTTGATGAGGTCGACCAGCATTGCTCTCTAGATATTTTGCCAATTCTTTTTGAGGAGGCTCAGCTTCCAGCAAAGTTAAAATATCCCTTTCACAGATCACATGCCCCAGATGTATTTAACATGTCAATGCTGCCCAAGGAAGACAATAGGCCACAATGGGGTTCCCTATTGGCCTTGTTGAGCTTCCTAAAAGTTTCTAATCCATTTAAAAGTCAGATGTGCATGGATGCACAATTGACTTGTCAGAACTGCGATGAATTACAACAAAACAATGGAGATGCTCATCCCCCATTCATCATGGAGATAGCTATTGAGAAGGAATATAATCAAGCACCAGAATCTGAAGAGGAAGCTGTCGAAAGTTTGAAAAGTGGTGGAGAACTTAGGGTGTTGCAGAGACAGATGAGCCCAAAAGTAGGTGGGAAACTCATGCAACTACTATTCGACCATGGCACTTCCAAAGATAACCCAGTGACTGAGAAAACTTATGAAACACCAAACAATCGGTGGAGAAGATGCAAACGCAATGCCTCATTTGATTCAAGAAAAATCGTTCTCCTATTCTCAGTCCTATCAAGTTTGGGAACATTGGTGCTGATATATCTAACATTGAGAGTTCGGCAAAGTGGTGATGGTCTCGTACTTGTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

256

Amino Acids

28.65

Weight (kDa)

5.73

Isoelectric Point (pI)

54.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 91
AccI GTMKAC 1 cut(s) 132
AcsI RAATTY 1 cut(s) 66
AcuI CTGAAG 1 cut(s) 483
AfaI GTAC 1 cut(s) 762
AfiI CCNNNNNNNGG 2 cut(s) 278, 536
AflIII ACRYGT 1 cut(s) 240
AgsI TTSAA 2 cut(s) 487, 663
AluBI AGCT 5 cut(s) 90, 184, 303, 428, 473
AluI AGCT 5 cut(s) 90, 184, 303, 428, 473
Alw26I GTCTC 2 cut(s) 511, 761
AlwNI CAGNNNCTG 2 cut(s) 461, 596
AoxI GGCC 2 cut(s) 269, 291
ApeKI GCWGC 2 cut(s) 26, 250
ApoI RAATTY 1 cut(s) 66
AsuHPI GGTGA 1 cut(s) 761
AsuNHI GCTAGC 1 cut(s) 86
BanII GRGCYC 1 cut(s) 530
BbsI GAAGAC 1 cut(s) 267
BbvI GCAGC 2 cut(s) 13, 237
BccI CCATC 2 cut(s) 68, 746
BcoDI GTCTC 2 cut(s) 511, 761
BfaI CTAG 2 cut(s) 87, 149
BfuAI ACCTGC 1 cut(s) 91
BisI GCNGC 2 cut(s) 27, 251
BlpI GCTNAGC 1 cut(s) 180
BlsI GCNGC 2 cut(s) 28, 252
BmiI GGNNCC 2 cut(s) 6, 283
BmrI ACTGGG 1 cut(s) 584
BmsI GCATC 3 cut(s) 337, 388, 626
BmtI GCTAGC 1 cut(s) 90
BmuI ACTGGG 1 cut(s) 584
BpiI GAAGAC 1 cut(s) 267
Bpu1102I GCTNAGC 1 cut(s) 180
BsaBI GATNNNNATC 1 cut(s) 402
BsaI GGTCTC 1 cut(s) 761
BsaJI CCNNGG 2 cut(s) 255, 568
Bsc4I CCNNNNNNNGG 2 cut(s) 278, 536
Bse1I ACTGG 1 cut(s) 590
Bse3DI GCAATG 3 cut(s) 27, 139, 652
Bse8I GATNNNNATC 1 cut(s) 402
BseDI CCNNGG 2 cut(s) 255, 568
BseGI GGATG 2 cut(s) 352, 403
BseJI GATNNNNATC 1 cut(s) 402
BseLI CCNNNNNNNGG 2 cut(s) 278, 536
BseMI GCAATG 3 cut(s) 27, 139, 652
BseMII CTCAG 3 cut(s) 194, 588, 699
BseNI ACTGG 1 cut(s) 590
BseRI GAGGAG 1 cut(s) 188
BseXI GCAGC 2 cut(s) 13, 237
BshFI GGCC 2 cut(s) 271, 293
BslI CCNNNNNNNGG 2 cut(s) 278, 536
BsmAI GTCTC 2 cut(s) 511, 761
BsnI GGCC 2 cut(s) 271, 293
Bso31I GGTCTC 1 cut(s) 761
Bsp1286I GDGCHC 1 cut(s) 530
Bsp143I GATC 1 cut(s) 215
Bsp1720I GCTNAGC 1 cut(s) 180
Bsp19I CCATGG 1 cut(s) 568
BspANI GGCC 2 cut(s) 271, 293
BspCNI CTCAG 3 cut(s) 193, 589, 698
BspLI GGNNCC 2 cut(s) 6, 283
BspMI ACCTGC 1 cut(s) 91
BspOI GCTAGC 1 cut(s) 90
BspTNI GGTCTC 1 cut(s) 761
BsrDI GCAATG 3 cut(s) 27, 139, 652
BsrI ACTGG 1 cut(s) 590
BssECI CCNNGG 2 cut(s) 255, 568
BssMI GATC 1 cut(s) 215
BssT1I CCWWGG 2 cut(s) 255, 568
Bst6I CTCTTC 1 cut(s) 459
BstAPI GCANNNNNTGC 1 cut(s) 26
BstC8I GCNNGC 1 cut(s) 88
BstDEI CTNAG 4 cut(s) 180, 503, 597, 685
BstDSI CCRYGG 1 cut(s) 568
BstF5I GGATG 2 cut(s) 352, 403
BstKTI GATC 1 cut(s) 218
BstMAI GTCTC 2 cut(s) 511, 761
BstMBI GATC 1 cut(s) 215
BstMWI GCNNNNNNNGC 1 cut(s) 26
BstNSI RCATGY 2 cut(s) 224, 244
BstV1I GCAGC 2 cut(s) 13, 237
BstV2I GAAGAC 1 cut(s) 267
BsuRI GGCC 2 cut(s) 271, 293
BtgI CCRYGG 1 cut(s) 568
BtgZI GCGATG 1 cut(s) 387
BtsCI GGATG 2 cut(s) 352, 403
BtsIMutI CAGTG 1 cut(s) 597
BveI ACCTGC 1 cut(s) 91
Cac8I GCNNGC 1 cut(s) 88
CaiI CAGNNNCTG 2 cut(s) 461, 596
Csp6I GTAC 1 cut(s) 761
CviAII CATG 6 cut(s) 221, 241, 343, 418, 550, 569
CviQI GTAC 1 cut(s) 761
DdeI CTNAG 4 cut(s) 180, 503, 597, 685
DpnI GATC 1 cut(s) 217
DpnII GATC 1 cut(s) 215
DraI TTTAAA 1 cut(s) 328
Eam1104I CTCTTC 1 cut(s) 459
EarI CTCTTC 1 cut(s) 459
Eco130I CCWWGG 2 cut(s) 255, 568
Eco24I GRGCYC 1 cut(s) 530
Eco31I GGTCTC 1 cut(s) 761
Eco57I CTGAAG 1 cut(s) 483
EcoT14I CCWWGG 2 cut(s) 255, 568
EcoT38I GRGCYC 1 cut(s) 530
ErhI CCWWGG 2 cut(s) 255, 568
FaeI CATG 6 cut(s) 224, 244, 346, 421, 553, 572
FaiI YATR 9 cut(s) 222, 242, 344, 419, 444, 551, 570, 609, 721
FatI CATG 6 cut(s) 220, 240, 342, 417, 549, 568
FblI GTMKAC 1 cut(s) 132
Fnu4HI GCNGC 2 cut(s) 27, 251
FokI GGATG 2 cut(s) 359, 390
FriOI GRGCYC 1 cut(s) 530
Fsp4HI GCNGC 2 cut(s) 27, 251
FspBI CTAG 2 cut(s) 87, 149
GluI GCNGC 2 cut(s) 27, 251
HaeIII GGCC 2 cut(s) 271, 293
Hin1II CATG 6 cut(s) 224, 244, 346, 421, 553, 572
HincII GTYRAC 1 cut(s) 133
HindII GTYRAC 1 cut(s) 133
HinfI GANTC 2 cut(s) 458, 659
HphI GGTGA 1 cut(s) 761
Hpy166II GTNNAC 1 cut(s) 133
Hpy188I TCNGA 5 cut(s) 40, 73, 336, 366, 463
Hpy188III TCNNGA 2 cut(s) 149, 663
Hpy8I GTNNAC 1 cut(s) 133
HpyAV CCTTC 1 cut(s) 430
HpyCH4V TGCA 6 cut(s) 20, 342, 350, 514, 553, 639
HpyF10VI GCNNNNNNNGC 1 cut(s) 26
HpyF3I CTNAG 4 cut(s) 180, 503, 597, 685
Hsp92II CATG 6 cut(s) 224, 244, 346, 421, 553, 572
Kzo9I GATC 1 cut(s) 215
LpnPI CCDG 6 cut(s) 96, 149, 201, 240, 468, 603
Lsp1109I GCAGC 2 cut(s) 13, 237
LweI GCATC 3 cut(s) 337, 388, 626
MaeI CTAG 2 cut(s) 87, 149
MaeIII GTNAC 2 cut(s) 105, 592
MalI GATC 1 cut(s) 217
MboI GATC 1 cut(s) 215
MboII GAAGA 3 cut(s) 272, 476, 645
MfeI CAATTG 1 cut(s) 353
MhlI GDGCHC 1 cut(s) 530
MluCI AATT 4 cut(s) 66, 162, 353, 377
MnlI CCTC 7 cut(s) 37, 46, 121, 166, 169, 460, 661
MseI TTAA 4 cut(s) 102, 197, 237, 327
MslI CAYNNNNRTG 1 cut(s) 245
MunI CAATTG 1 cut(s) 353
MwoI GCNNNNNNNGC 1 cut(s) 26
NcoI CCATGG 1 cut(s) 568
NdeII GATC 1 cut(s) 215
NheI GCTAGC 1 cut(s) 86
NlaIII CATG 6 cut(s) 224, 244, 346, 421, 553, 572
NlaIV GGNNCC 2 cut(s) 6, 283
NmuCI GTSAC 1 cut(s) 592
NspI RCATGY 2 cut(s) 224, 244
PciI ACATGT 1 cut(s) 240
PfeI GAWTC 2 cut(s) 458, 659
PkrI GCNGC 2 cut(s) 28, 252
PscI ACATGT 1 cut(s) 240
PspN4I GGNNCC 2 cut(s) 6, 283
PstNI CAGNNNCTG 2 cut(s) 461, 596
RsaI GTAC 1 cut(s) 762
RsaNI GTAC 1 cut(s) 761
RseI CAYNNNNRTG 1 cut(s) 245
SalI GTCGAC 1 cut(s) 131
SaqAI TTAA 4 cut(s) 102, 197, 237, 327
SatI GCNGC 2 cut(s) 27, 251
Sau3AI GATC 1 cut(s) 215
SduI GDGCHC 1 cut(s) 530
SetI ASST 9 cut(s) 55, 85, 92, 132, 186, 305, 430, 475, 541
SfaNI GCATC 3 cut(s) 337, 388, 626
SmiMI CAYNNNNRTG 1 cut(s) 245
Sse9I AATT 4 cut(s) 66, 162, 353, 377
SspMI CTAG 2 cut(s) 87, 149
StyI CCWWGG 2 cut(s) 255, 568
TaqI TCGA 3 cut(s) 132, 477, 564
TasI AATT 4 cut(s) 66, 162, 353, 377
TfiI GAWTC 2 cut(s) 458, 659
Tru1I TTAA 4 cut(s) 102, 197, 237, 327
Tru9I TTAA 4 cut(s) 102, 197, 237, 327
TscAI CASTG 1 cut(s) 597
TseFI GTSAC 1 cut(s) 592
TseI GCWGC 2 cut(s) 26, 250
Tsp45I GTSAC 1 cut(s) 592
TspDTI ATGAA 3 cut(s) 390, 403, 624
TspGWI ACGGA 1 cut(s) 78
TspRI CASTG 1 cut(s) 597
XapI RAATTY 1 cut(s) 66
XbaI TCTAGA 1 cut(s) 148
XceI RCATGY 2 cut(s) 224, 244
XcmI CCANNNNNNNNNTGG 1 cut(s) 624
XmiI GTMKAC 1 cut(s) 132
XspI CTAG 2 cut(s) 87, 149
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.