Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0001744

Physical Location & Seq

Genomic Coordinates Reverse (-)

26479570 .. 26484495

Gene Structure 4926 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG255800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

ATGTCAATGCTGCCCAAGGAAGACAATAGGCCACAATGGGGTTCCCTATTGGCCTTGTTGAGCTTCCTAAAAGTTTCTAATCCATTTAAAAGTCACATGTGCATGGATGCACAATTGACTTGTCAGAACTGCGATGAATTACAACAAAACAATGGAGATGCTCATCCCCCATTCATCATGGAGATAGCTATTGAGAAGGAATATAATCAAGCACCAGAATCTGAAGAGGAAGCTGTCGAAAGTTTGAAAAGTGGTGGAGAACTTAGGGTGTTGCAGAGACAGATGAGCCCAAAAGTAGGTGGGAAACTCATGCAACTACTATTCGACCATGGCACTTCCAAAGATAACCCAGTGACTGAGAAAACTTATGAAACACCAAACAACCGGTGGAGAAGATGCAAACGCAATGCCTCATTTGATTCAAGAAAAATCGTTCTCCTATTCTCAGTCCTATCAAGTTTGGGAACATTGGTGCTGATATATCTAACATTGAGAGTTCGGCAAAGTGGTGATGGTCTCATACTTGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

176

Amino Acids

19.93

Weight (kDa)

6.83

Isoelectric Point (pI)

58.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001744)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G39900
fragaria_vesca	FvH4_1g20820 FvH4_1g20820 FvH4_1g20820 FvH4_1g20820
malus_domestica	MD01G1030700.v1.1 MD15G1323600.v1.1
prunus_persica	Prupe.6G187400_v2.0.a1 Prupe.6G187400_v2.0.a1 Prupe.6G187400_v2.0.a1 Prupe.6G187400_v2.0.a1 Prupe.6G187400_v2.0.a1 Prupe.6G187400_v2.0.a1 Prupe.6G187400_v2.0.a1 Prupe.6G187400_v2.0.a1 Prupe.6G187400_v2.0.a1 Prupe.6G187400_v2.0.a1 Prupe.6G187400_v2.0.a1 Prupe.6G187400_v2.0.a1 Prupe.6G187400_v2.0.a1 Prupe.6G187400_v2.0.a1 Prupe.6G187400_v2.0.a1 Prupe.6G187400_v2.0.a1 Prupe.6G187400_v2.0.a1 Prupe.6G187400_v2.0.a1 Prupe.6G187400_v2.0.a1 Prupe.6G187400_v2.0.a1 Prupe.6G187400_v2.0.a1 Prupe.6G187400_v2.0.a1 Prupe.6G187400_v2.0.a1 Prupe.6G187400_v2.0.a1 Prupe.6G187400_v2.0.a1
pyrus_communis	pycom01g05830 pycom15g28550
rosa_chinensis	RchiOBHm_Chr2g0113431 RchiOBHm_Chr2g0113441
rosa_laevigata	RLG00000018063
rosa_multiflora	Rmu_sc0007415.1_g000016
rosa_roxburghii	Rroxscaffold_2G00129260 Rroxscaffold_2G00129920
rosa_rugosa	Rorug02G0187400 Rorug02G0187500 Rorug02G0187600
rosa_samantha	Rh2AG242000 Rh2BG255800 Rh2CG246100 Rh2DG249900
rosa_wichuraiana	Rw2G018880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcuI	CTGAAG	1 cut(s)	243
AfiI	CCNNNNNNNGG	2 cut(s)	38, 296
AflIII	ACRYGT	1 cut(s)	96
AgeI	ACCGGT	1 cut(s)	384
AgsI	TTSAA	2 cut(s)	247, 423
AluBI	AGCT	3 cut(s)	63, 188, 233
AluI	AGCT	3 cut(s)	63, 188, 233
Alw26I	GTCTC	2 cut(s)	271, 521
AlwNI	CAGNNNCTG	2 cut(s)	221, 356
AoxI	GGCC	2 cut(s)	29, 51
ApeKI	GCWGC	1 cut(s)	10
AsiGI	ACCGGT	1 cut(s)	384
AsuHPI	GGTGA	1 cut(s)	521
BanII	GRGCYC	1 cut(s)	290
BbsI	GAAGAC	1 cut(s)	27
BccI	CCATC	1 cut(s)	506
BcoDI	GTCTC	2 cut(s)	271, 521
BisI	GCNGC	1 cut(s)	11
BlsI	GCNGC	1 cut(s)	12
BmiI	GGNNCC	1 cut(s)	43
BmrI	ACTGGG	1 cut(s)	344
BmsI	GCATC	3 cut(s)	97, 148, 386
BmuI	ACTGGG	1 cut(s)	344
BpiI	GAAGAC	1 cut(s)	27
BsaBI	GATNNNNATC	1 cut(s)	162
BsaI	GGTCTC	1 cut(s)	521
BsaJI	CCNNGG	2 cut(s)	15, 328
BsaWI	WCCGGW	1 cut(s)	384
Bsc4I	CCNNNNNNNGG	2 cut(s)	38, 296
Bse118I	RCCGGY	1 cut(s)	384
Bse1I	ACTGG	1 cut(s)	350
Bse3DI	GCAATG	1 cut(s)	412
Bse8I	GATNNNNATC	1 cut(s)	162
BseDI	CCNNGG	2 cut(s)	15, 328
BseGI	GGATG	2 cut(s)	112, 163
BseJI	GATNNNNATC	1 cut(s)	162
BseLI	CCNNNNNNNGG	2 cut(s)	38, 296
BseMI	GCAATG	1 cut(s)	412
BseMII	CTCAG	2 cut(s)	348, 459
BseNI	ACTGG	1 cut(s)	350
BshFI	GGCC	2 cut(s)	31, 53
BshTI	ACCGGT	1 cut(s)	384
BsiSI	CCGG	1 cut(s)	385
BslI	CCNNNNNNNGG	2 cut(s)	38, 296
BsmAI	GTCTC	2 cut(s)	271, 521
BsnI	GGCC	2 cut(s)	31, 53
Bso31I	GGTCTC	1 cut(s)	521
Bsp1286I	GDGCHC	1 cut(s)	290
Bsp19I	CCATGG	1 cut(s)	328
BspANI	GGCC	2 cut(s)	31, 53
BspCNI	CTCAG	2 cut(s)	349, 458
BspLI	GGNNCC	1 cut(s)	43
BspTNI	GGTCTC	1 cut(s)	521
BsrDI	GCAATG	1 cut(s)	412
BsrFI	RCCGGY	1 cut(s)	384
BsrI	ACTGG	1 cut(s)	350
BssAI	RCCGGY	1 cut(s)	384
BssECI	CCNNGG	2 cut(s)	15, 328
BssT1I	CCWWGG	2 cut(s)	15, 328
Bst6I	CTCTTC	1 cut(s)	219
BstDEI	CTNAG	3 cut(s)	263, 357, 445
BstDSI	CCRYGG	1 cut(s)	328
BstF5I	GGATG	2 cut(s)	112, 163
BstMAI	GTCTC	2 cut(s)	271, 521
BstNSI	RCATGY	1 cut(s)	100
BstV2I	GAAGAC	1 cut(s)	27
BsuRI	GGCC	2 cut(s)	31, 53
BtgI	CCRYGG	1 cut(s)	328
BtgZI	GCGATG	1 cut(s)	147
BtsCI	GGATG	2 cut(s)	112, 163
BtsIMutI	CAGTG	1 cut(s)	357
CaiI	CAGNNNCTG	2 cut(s)	221, 356
Cfr10I	RCCGGY	1 cut(s)	384
CspAI	ACCGGT	1 cut(s)	384
CviAII	CATG	5 cut(s)	97, 103, 178, 310, 329
CviJI	RGCY	6 cut(s)	31, 53, 63, 188, 233, 288
CviKI_1	RGCY	6 cut(s)	31, 53, 63, 188, 233, 288
DdeI	CTNAG	3 cut(s)	263, 357, 445
DraI	TTTAAA	1 cut(s)	88
Eam1104I	CTCTTC	1 cut(s)	219
EarI	CTCTTC	1 cut(s)	219
Eco130I	CCWWGG	2 cut(s)	15, 328
Eco24I	GRGCYC	1 cut(s)	290
Eco31I	GGTCTC	1 cut(s)	521
Eco57I	CTGAAG	1 cut(s)	243
EcoT14I	CCWWGG	2 cut(s)	15, 328
EcoT38I	GRGCYC	1 cut(s)	290
ErhI	CCWWGG	2 cut(s)	15, 328
FaeI	CATG	5 cut(s)	100, 106, 181, 313, 332
FaiI	YATR	9 cut(s)	98, 104, 179, 204, 311, 330, 369, 481, 521
FatI	CATG	5 cut(s)	96, 102, 177, 309, 328
Fnu4HI	GCNGC	1 cut(s)	11
FokI	GGATG	2 cut(s)	119, 150
FriOI	GRGCYC	1 cut(s)	290
Fsp4HI	GCNGC	1 cut(s)	11
GluI	GCNGC	1 cut(s)	11
HaeIII	GGCC	2 cut(s)	31, 53
HapII	CCGG	1 cut(s)	385
Hin1II	CATG	5 cut(s)	100, 106, 181, 313, 332
HinfI	GANTC	2 cut(s)	218, 419
HpaII	CCGG	1 cut(s)	385
HphI	GGTGA	1 cut(s)	521
Hpy188I	TCNGA	2 cut(s)	126, 223
Hpy188III	TCNNGA	1 cut(s)	423
HpyAV	CCTTC	1 cut(s)	190
HpyCH4V	TGCA	5 cut(s)	102, 110, 274, 313, 399
HpyF3I	CTNAG	3 cut(s)	263, 357, 445
Hsp92II	CATG	5 cut(s)	100, 106, 181, 313, 332
LpnPI	CCDG	3 cut(s)	228, 363, 398
LweI	GCATC	3 cut(s)	97, 148, 386
MaeIII	GTNAC	2 cut(s)	92, 352
MboII	GAAGA	3 cut(s)	32, 236, 405
MfeI	CAATTG	1 cut(s)	113
MhlI	GDGCHC	1 cut(s)	290
MluCI	AATT	2 cut(s)	113, 137
MnlI	CCTC	2 cut(s)	220, 421
MseI	TTAA	1 cut(s)	87
MslI	CAYNNNNRTG	1 cut(s)	101
MspI	CCGG	1 cut(s)	385
MunI	CAATTG	1 cut(s)	113
NcoI	CCATGG	1 cut(s)	328
NlaIII	CATG	5 cut(s)	100, 106, 181, 313, 332
NlaIV	GGNNCC	1 cut(s)	43
NmuCI	GTSAC	2 cut(s)	92, 352
NspI	RCATGY	1 cut(s)	100
PciI	ACATGT	1 cut(s)	96
PfeI	GAWTC	2 cut(s)	218, 419
PinAI	ACCGGT	1 cut(s)	384
PkrI	GCNGC	1 cut(s)	12
PscI	ACATGT	1 cut(s)	96
PspN4I	GGNNCC	1 cut(s)	43
PstNI	CAGNNNCTG	2 cut(s)	221, 356
RseI	CAYNNNNRTG	1 cut(s)	101
SaqAI	TTAA	1 cut(s)	87
SatI	GCNGC	1 cut(s)	11
SduI	GDGCHC	1 cut(s)	290
SetI	ASST	4 cut(s)	65, 190, 235, 301
SfaNI	GCATC	3 cut(s)	97, 148, 386
SmiMI	CAYNNNNRTG	1 cut(s)	101
Sse9I	AATT	2 cut(s)	113, 137
StyI	CCWWGG	2 cut(s)	15, 328
TaqI	TCGA	2 cut(s)	237, 324
TasI	AATT	2 cut(s)	113, 137
TfiI	GAWTC	2 cut(s)	218, 419
Tru1I	TTAA	1 cut(s)	87
Tru9I	TTAA	1 cut(s)	87
TscAI	CASTG	1 cut(s)	357
TseFI	GTSAC	2 cut(s)	92, 352
TseI	GCWGC	1 cut(s)	10
Tsp45I	GTSAC	2 cut(s)	92, 352
TspDTI	ATGAA	3 cut(s)	150, 163, 384
TspRI	CASTG	1 cut(s)	357
XceI	RCATGY	1 cut(s)	100
XcmI	CCANNNNNNNNNTGG	1 cut(s)	384

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.