Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0001744

Physical Location & Seq

Genomic Coordinates Reverse (-)

66017228 .. 66022143

Gene Structure 4916 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00129920.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 915 bp

ATGGGTAGCTTTGTTTTAGTGTTGGTGGACAGCTGGCATTGCTGGTCAATATCGAGTTGGGTTTCGTTGTACGTGATTCTTAGCAGGCTCTCCATATGTTTTAGGAAAGAATGTCTTAGGTTCTTGATTGCTCACGGAAAACCTTACATTCACGGAATTTCTGATGGAATACCTTCTAGCTGTCCGAGTGTTAAGTTACTAAAGTCAGCGTTTGATGAGGTCGACCAGCATTGCTCTCTAGATATTTTGCCAATTCTTTTTGAGGAGGCTCAGCTTCCAGCAAAGTTAAAATATCCCTTTCACAGATCACATGCCCCAGATGTATTTAACATGTCAATGCTGCCCAAGGAACACAATAGGCCACAATGGGGTTCCCTATTGGCCTTGTTGAGCTTCCTAAAATTTTCTAATCCATTTAAAAGTCAGATGTGCATGGATGCACAATTGACTTGTCAGAACTGCGATGAATTACAACAAAACAATGGAGATGCTCATCCCCCATTCATCATGGAGATAGCTATTGAGAAGGAATATAATCAAGCACCAGAATCCGAAGAGGAAGCTGTTGAAAGTTTGAAAAGTGGTGGAGAACTTAGGGTGTTGCAGAGACAGATGAGCCCAAAAGTAGGTGGGAAACTCATGCAACTACTATTCGACCATGGCACTTCAAAAGCAAATTATGGCAAAAAGAATGAGATATTCTACTGGCGGGCAAGCTACAACAGAGATAACCCAGTGACTGAGAAAACTTATGAAACACCAAACAACCGGTGGAGAAGATGCAAACGCAATGCCTCATTTGATTCAAGAAAAATCGTTCTCCTATTCTCAGTCCTATCAAGTTTGGGAACATTGGTGCTGATATATCTAACATTGAGAGTTCGGCAAAGTGGTGATGGTCTCGTACTTGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

304

Amino Acids

34.72

Weight (kDa)

8.51

Isoelectric Point (pI)

52.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001744)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G39900
fragaria_vesca	FvH4_1g20820 FvH4_1g20820 FvH4_1g20820 FvH4_1g20820
malus_domestica	MD01G1030700.v1.1 MD15G1323600.v1.1
prunus_persica	Prupe.6G187400_v2.0.a1 Prupe.6G187400_v2.0.a1 Prupe.6G187400_v2.0.a1 Prupe.6G187400_v2.0.a1 Prupe.6G187400_v2.0.a1 Prupe.6G187400_v2.0.a1 Prupe.6G187400_v2.0.a1 Prupe.6G187400_v2.0.a1 Prupe.6G187400_v2.0.a1 Prupe.6G187400_v2.0.a1 Prupe.6G187400_v2.0.a1 Prupe.6G187400_v2.0.a1 Prupe.6G187400_v2.0.a1 Prupe.6G187400_v2.0.a1 Prupe.6G187400_v2.0.a1 Prupe.6G187400_v2.0.a1 Prupe.6G187400_v2.0.a1 Prupe.6G187400_v2.0.a1 Prupe.6G187400_v2.0.a1 Prupe.6G187400_v2.0.a1 Prupe.6G187400_v2.0.a1 Prupe.6G187400_v2.0.a1 Prupe.6G187400_v2.0.a1 Prupe.6G187400_v2.0.a1 Prupe.6G187400_v2.0.a1
pyrus_communis	pycom01g05830 pycom15g28550
rosa_chinensis	RchiOBHm_Chr2g0113431 RchiOBHm_Chr2g0113441
rosa_laevigata	RLG00000018063
rosa_multiflora	Rmu_sc0007415.1_g000016
rosa_roxburghii	Rroxscaffold_2G00129260 Rroxscaffold_2G00129920
rosa_rugosa	Rorug02G0187400 Rorug02G0187500 Rorug02G0187600
rosa_samantha	Rh2AG242000 Rh2BG255800 Rh2CG246100 Rh2DG249900
rosa_wichuraiana	Rw2G018880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	222
AciI	CCGC	1 cut(s)	709
AcsI	RAATTY	2 cut(s)	156, 401
AfaI	GTAC	2 cut(s)	71, 906
AfiI	CCNNNNNNNGG	2 cut(s)	368, 626
AflIII	ACRYGT	1 cut(s)	330
AgeI	ACCGGT	1 cut(s)	768
AgsI	TTSAA	4 cut(s)	569, 577, 669, 807
AluBI	AGCT	8 cut(s)	9, 33, 180, 274, 393, 518, 563, 717
AluI	AGCT	8 cut(s)	9, 33, 180, 274, 393, 518, 563, 717
Alw26I	GTCTC	2 cut(s)	601, 905
AlwNI	CAGNNNCTG	1 cut(s)	740
AoxI	GGCC	2 cut(s)	359, 381
ApeKI	GCWGC	1 cut(s)	340
ApoI	RAATTY	2 cut(s)	156, 401
AsiGI	ACCGGT	1 cut(s)	768
Asp700I	GAANNNNTTC	1 cut(s)	172
AsuHPI	GGTGA	1 cut(s)	905
BanII	GRGCYC	1 cut(s)	620
BbvI	GCAGC	1 cut(s)	327
BccI	CCATC	2 cut(s)	158, 890
BcoDI	GTCTC	2 cut(s)	601, 905
BfaI	CTAG	2 cut(s)	177, 239
BisI	GCNGC	1 cut(s)	341
BlpI	GCTNAGC	1 cut(s)	270
BlsI	GCNGC	1 cut(s)	342
BmiI	GGNNCC	1 cut(s)	373
BmrI	ACTGGG	1 cut(s)	728
BmsI	GCATC	3 cut(s)	427, 478, 770
BmuI	ACTGGG	1 cut(s)	728
Bpu1102I	GCTNAGC	1 cut(s)	270
BsaAI	YACGTR	1 cut(s)	73
BsaBI	GATNNNNATC	1 cut(s)	492
BsaI	GGTCTC	1 cut(s)	905
BsaJI	CCNNGG	2 cut(s)	345, 658
BsaWI	WCCGGW	1 cut(s)	768
Bsc4I	CCNNNNNNNGG	2 cut(s)	368, 626
Bse118I	RCCGGY	1 cut(s)	768
Bse1I	ACTGG	2 cut(s)	710, 734
Bse3DI	GCAATG	3 cut(s)	37, 229, 796
Bse8I	GATNNNNATC	1 cut(s)	492
BseDI	CCNNGG	2 cut(s)	345, 658
BseGI	GGATG	2 cut(s)	442, 493
BseJI	GATNNNNATC	1 cut(s)	492
BseLI	CCNNNNNNNGG	2 cut(s)	368, 626
BseMI	GCAATG	3 cut(s)	37, 229, 796
BseMII	CTCAG	3 cut(s)	284, 732, 843
BseNI	ACTGG	2 cut(s)	710, 734
BseRI	GAGGAG	1 cut(s)	278
BseXI	GCAGC	1 cut(s)	327
BshFI	GGCC	2 cut(s)	361, 383
BshTI	ACCGGT	1 cut(s)	768
BsiSI	CCGG	1 cut(s)	769
BslI	CCNNNNNNNGG	2 cut(s)	368, 626
BsmAI	GTCTC	2 cut(s)	601, 905
BsnI	GGCC	2 cut(s)	361, 383
Bso31I	GGTCTC	1 cut(s)	905
Bsp1286I	GDGCHC	1 cut(s)	620
Bsp143I	GATC	1 cut(s)	305
Bsp1720I	GCTNAGC	1 cut(s)	270
Bsp19I	CCATGG	1 cut(s)	658
BspACI	CCGC	1 cut(s)	709
BspANI	GGCC	2 cut(s)	361, 383
BspCNI	CTCAG	3 cut(s)	283, 733, 842
BspLI	GGNNCC	1 cut(s)	373
BspTNI	GGTCTC	1 cut(s)	905
BsrDI	GCAATG	3 cut(s)	37, 229, 796
BsrFI	RCCGGY	1 cut(s)	768
BsrI	ACTGG	2 cut(s)	710, 734
BssAI	RCCGGY	1 cut(s)	768
BssECI	CCNNGG	2 cut(s)	345, 658
BssMI	GATC	1 cut(s)	305
BssT1I	CCWWGG	2 cut(s)	345, 658
Bst6I	CTCTTC	1 cut(s)	549
BstBAI	YACGTR	1 cut(s)	73
BstC8I	GCNNGC	4 cut(s)	35, 86, 711, 715
BstDEI	CTNAG	6 cut(s)	80, 116, 270, 593, 741, 829
BstDSI	CCRYGG	1 cut(s)	658
BstF5I	GGATG	2 cut(s)	442, 493
BstKTI	GATC	1 cut(s)	308
BstMAI	GTCTC	2 cut(s)	601, 905
BstMBI	GATC	1 cut(s)	305
BstMWI	GCNNNNNNNGC	1 cut(s)	39
BstNSI	RCATGY	2 cut(s)	314, 334
BstV1I	GCAGC	1 cut(s)	327
BsuRI	GGCC	2 cut(s)	361, 383
BtgI	CCRYGG	1 cut(s)	658
BtgZI	GCGATG	1 cut(s)	477
BtsCI	GGATG	2 cut(s)	442, 493
BtsIMutI	CAGTG	1 cut(s)	741
Cac8I	GCNNGC	4 cut(s)	35, 86, 711, 715
CaiI	CAGNNNCTG	1 cut(s)	740
Cfr10I	RCCGGY	1 cut(s)	768
Csp6I	GTAC	2 cut(s)	70, 905
CspAI	ACCGGT	1 cut(s)	768
CviAII	CATG	6 cut(s)	311, 331, 433, 508, 640, 659
CviQI	GTAC	2 cut(s)	70, 905
DdeI	CTNAG	6 cut(s)	80, 116, 270, 593, 741, 829
DpnI	GATC	1 cut(s)	307
DpnII	GATC	1 cut(s)	305
DraI	TTTAAA	1 cut(s)	418
Eam1104I	CTCTTC	1 cut(s)	549
EarI	CTCTTC	1 cut(s)	549
Eco130I	CCWWGG	2 cut(s)	345, 658
Eco24I	GRGCYC	1 cut(s)	620
Eco31I	GGTCTC	1 cut(s)	905
EcoT14I	CCWWGG	2 cut(s)	345, 658
EcoT38I	GRGCYC	1 cut(s)	620
ErhI	CCWWGG	2 cut(s)	345, 658
FaeI	CATG	6 cut(s)	314, 334, 436, 511, 643, 662
FalI	AAGNNNNNCTT	2 cut(s)	99, 131
FatI	CATG	6 cut(s)	310, 330, 432, 507, 639, 658
FauI	CCCGC	1 cut(s)	702
FauNDI	CATATG	1 cut(s)	95
FblI	GTMKAC	1 cut(s)	222
Fnu4HI	GCNGC	1 cut(s)	341
FokI	GGATG	2 cut(s)	449, 480
FriOI	GRGCYC	1 cut(s)	620
Fsp4HI	GCNGC	1 cut(s)	341
FspBI	CTAG	2 cut(s)	177, 239
GluI	GCNGC	1 cut(s)	341
HaeIII	GGCC	2 cut(s)	361, 383
HapII	CCGG	1 cut(s)	769
Hin1II	CATG	6 cut(s)	314, 334, 436, 511, 643, 662
HincII	GTYRAC	1 cut(s)	223
HindII	GTYRAC	1 cut(s)	223
HinfI	GANTC	3 cut(s)	76, 548, 803
HpaII	CCGG	1 cut(s)	769
HphI	GGTGA	1 cut(s)	905
Hpy166II	GTNNAC	2 cut(s)	28, 223
Hpy188I	TCNGA	5 cut(s)	163, 186, 426, 456, 553
Hpy188III	TCNNGA	3 cut(s)	124, 239, 807
Hpy8I	GTNNAC	2 cut(s)	28, 223
HpyAV	CCTTC	2 cut(s)	183, 520
HpyCH4IV	ACGT	1 cut(s)	72
HpyCH4V	TGCA	5 cut(s)	432, 440, 604, 643, 783
HpyF10VI	GCNNNNNNNGC	1 cut(s)	39
HpyF3I	CTNAG	6 cut(s)	80, 116, 270, 593, 741, 829
HpySE526I	ACGT	1 cut(s)	72
Hsp92II	CATG	6 cut(s)	314, 334, 436, 511, 643, 662
Kzo9I	GATC	1 cut(s)	305
Lsp1109I	GCAGC	1 cut(s)	327
LweI	GCATC	3 cut(s)	427, 478, 770
MaeI	CTAG	2 cut(s)	177, 239
MaeII	ACGT	1 cut(s)	72
MaeIII	GTNAC	2 cut(s)	195, 736
MalI	GATC	1 cut(s)	307
MboI	GATC	1 cut(s)	305
MboII	GAAGA	2 cut(s)	566, 789
MfeI	CAATTG	1 cut(s)	443
MhlI	GDGCHC	1 cut(s)	620
MluCI	AATT	6 cut(s)	156, 252, 401, 443, 467, 676
MnlI	CCTC	5 cut(s)	211, 256, 259, 550, 805
MroXI	GAANNNNTTC	1 cut(s)	172
MseI	TTAA	4 cut(s)	192, 287, 327, 417
MslI	CAYNNNNRTG	1 cut(s)	335
MspA1I	CMGCKG	1 cut(s)	33
MspI	CCGG	1 cut(s)	769
MunI	CAATTG	1 cut(s)	443
MwoI	GCNNNNNNNGC	1 cut(s)	39
NcoI	CCATGG	1 cut(s)	658
NdeI	CATATG	1 cut(s)	95
NdeII	GATC	1 cut(s)	305
NlaIII	CATG	6 cut(s)	314, 334, 436, 511, 643, 662
NlaIV	GGNNCC	1 cut(s)	373
NmuCI	GTSAC	1 cut(s)	736
NspI	RCATGY	2 cut(s)	314, 334
PciI	ACATGT	1 cut(s)	330
PdmI	GAANNNNTTC	1 cut(s)	172
PfeI	GAWTC	3 cut(s)	76, 548, 803
PinAI	ACCGGT	1 cut(s)	768
PkrI	GCNGC	1 cut(s)	342
Ppu21I	YACGTR	1 cut(s)	73
PscI	ACATGT	1 cut(s)	330
PspN4I	GGNNCC	1 cut(s)	373
PstNI	CAGNNNCTG	1 cut(s)	740
PvuII	CAGCTG	1 cut(s)	33
RsaI	GTAC	2 cut(s)	71, 906
RsaNI	GTAC	2 cut(s)	70, 905
RseI	CAYNNNNRTG	1 cut(s)	335
SalI	GTCGAC	1 cut(s)	221
SaqAI	TTAA	4 cut(s)	192, 287, 327, 417
SatI	GCNGC	1 cut(s)	341
Sau3AI	GATC	1 cut(s)	305
SduI	GDGCHC	1 cut(s)	620
SfaNI	GCATC	3 cut(s)	427, 478, 770
SmiMI	CAYNNNNRTG	1 cut(s)	335
Sse9I	AATT	6 cut(s)	156, 252, 401, 443, 467, 676
SsiI	CCGC	1 cut(s)	709
SspMI	CTAG	2 cut(s)	177, 239
StyI	CCWWGG	2 cut(s)	345, 658
TaiI	ACGT	1 cut(s)	75
TaqI	TCGA	3 cut(s)	53, 222, 654
TasI	AATT	6 cut(s)	156, 252, 401, 443, 467, 676
TfiI	GAWTC	3 cut(s)	76, 548, 803
Tru1I	TTAA	4 cut(s)	192, 287, 327, 417
Tru9I	TTAA	4 cut(s)	192, 287, 327, 417
TscAI	CASTG	1 cut(s)	741
TseFI	GTSAC	1 cut(s)	736
TseI	GCWGC	1 cut(s)	340
Tsp45I	GTSAC	1 cut(s)	736
TspDTI	ATGAA	3 cut(s)	480, 493, 768
TspGWI	ACGGA	2 cut(s)	150, 168
TspRI	CASTG	1 cut(s)	741
XapI	RAATTY	2 cut(s)	156, 401
XbaI	TCTAGA	1 cut(s)	238
XceI	RCATGY	2 cut(s)	314, 334
XcmI	CCANNNNNNNNNTGG	1 cut(s)	768
XmiI	GTMKAC	1 cut(s)	222
XmnI	GAANNNNTTC	1 cut(s)	172
XspI	CTAG	2 cut(s)	177, 239

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.