Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0001744

Physical Location & Seq

Genomic Coordinates Forward (+)

24612920 .. 24620191

Gene Structure 7272 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g28550.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 771 bp

ATGCCGGCTGTTAATACCTCCGATTCCAATGAGGGGAAACCATACATCCAAGGAACTGTGGATAGAGGTTGCAGCTTACCTGCTAGCTGTTCAAGTTTTAAGTTGCTAAAGCAAACTATTGATGAGGTCGACCGTCATTGTTCTCTAGATATTCAGCCTATTCTGTTGGAGAAGGCTCACCTTCCAGCAAAGCCAAAATATCCCTTTCACGGTTCAGATGCTACAGATGTGTATAGCATTTCAATGTTAGCCACAGAAGGCAACAGTCCACAATGCCCTTCAGTATTGGGATTTTTGAACTTTTCAGAAGTTTGTAATTCATGTAAAAGTCAGATGTGCATGGATGCTCAGTTGAGTTGCCAGAACTGCAATGATTTACAAGCAAATGGGGAAGATTCTCATCCCCCATGCATCATTGAGATAGATCTGGAGAAGGGATATATTCAAGCACCAGAATCCAAAGAGGAAGCAATTGAAAGTTTAAAACGCAAGGGCGTACTAGCTAGAGTGTTTCGGAGACAGCCTAGCCTAAACATTGGTGGGAAACTTTTGCAGCTTCTATTCAACCATGGCATTTCAAGAGATAACCCAGTGACAGAGAAAATTCATGAAGCACCAAATAACCGGTGGAAAAGATGCAAACGCAGTGCCTCATTTGATTCCAGAAAAGTCGTCTTCTTGTTCTCAATCTTGTCAAGTTTGGGGACAATGATTTTGATATACCTAACATTGAGAGTTAGGCAGAGTGCAGACGGTTTCATTCGTGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

257

Amino Acids

28.43

Weight (kDa)

7.98

Isoelectric Point (pI)

57.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001744)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G39900
fragaria_vesca	FvH4_1g20820 FvH4_1g20820 FvH4_1g20820 FvH4_1g20820
malus_domestica	MD01G1030700.v1.1 MD15G1323600.v1.1
prunus_persica	Prupe.6G187400_v2.0.a1 Prupe.6G187400_v2.0.a1 Prupe.6G187400_v2.0.a1 Prupe.6G187400_v2.0.a1 Prupe.6G187400_v2.0.a1 Prupe.6G187400_v2.0.a1 Prupe.6G187400_v2.0.a1 Prupe.6G187400_v2.0.a1 Prupe.6G187400_v2.0.a1 Prupe.6G187400_v2.0.a1 Prupe.6G187400_v2.0.a1 Prupe.6G187400_v2.0.a1 Prupe.6G187400_v2.0.a1 Prupe.6G187400_v2.0.a1 Prupe.6G187400_v2.0.a1 Prupe.6G187400_v2.0.a1 Prupe.6G187400_v2.0.a1 Prupe.6G187400_v2.0.a1 Prupe.6G187400_v2.0.a1 Prupe.6G187400_v2.0.a1 Prupe.6G187400_v2.0.a1 Prupe.6G187400_v2.0.a1 Prupe.6G187400_v2.0.a1 Prupe.6G187400_v2.0.a1 Prupe.6G187400_v2.0.a1
pyrus_communis	pycom01g05830 pycom15g28550
rosa_chinensis	RchiOBHm_Chr2g0113431 RchiOBHm_Chr2g0113441
rosa_laevigata	RLG00000018063
rosa_multiflora	Rmu_sc0007415.1_g000016
rosa_roxburghii	Rroxscaffold_2G00129260 Rroxscaffold_2G00129920
rosa_rugosa	Rorug02G0187400 Rorug02G0187500 Rorug02G0187600
rosa_samantha	Rh2AG242000 Rh2BG255800 Rh2CG246100 Rh2DG249900
rosa_wichuraiana	Rw2G018880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	88
AccI	GTMKAC	1 cut(s)	129
AcsI	RAATTY	1 cut(s)	603
AcuI	CTGAAG	1 cut(s)	264
AfaI	GTAC	1 cut(s)	498
AfiI	CCNNNNNNNGG	2 cut(s)	33, 209
AgeI	ACCGGT	1 cut(s)	624
AgsI	TTSAA	7 cut(s)	93, 243, 298, 446, 476, 565, 579
AluBI	AGCT	4 cut(s)	75, 87, 503, 556
AluI	AGCT	4 cut(s)	75, 87, 503, 556
Alw26I	GTCTC	1 cut(s)	511
ApeKI	GCWGC	2 cut(s)	72, 553
ApoI	RAATTY	1 cut(s)	603
ArsI	GACNNNNNNTTYG	2 cut(s)	697, 729
AsiGI	ACCGGT	1 cut(s)	624
AsuHPI	GGTGA	1 cut(s)	170
AsuNHI	GCTAGC	1 cut(s)	83
BbsI	GAAGAC	1 cut(s)	667
BbvI	GCAGC	2 cut(s)	84, 565
BcoDI	GTCTC	1 cut(s)	511
BfaI	CTAG	5 cut(s)	84, 146, 500, 504, 525
BfmI	CTRYAG	1 cut(s)	222
BfuAI	ACCTGC	1 cut(s)	88
BglII	AGATCT	1 cut(s)	424
BisI	GCNGC	2 cut(s)	73, 554
BlsI	GCNGC	2 cut(s)	74, 555
BmrI	ACTGGG	1 cut(s)	584
BmsI	GCATC	4 cut(s)	208, 334, 420, 626
BmtI	GCTAGC	1 cut(s)	87
BmuI	ACTGGG	1 cut(s)	584
BpiI	GAAGAC	1 cut(s)	667
BpmI	CTGGAG	1 cut(s)	449
BsaBI	GATNNNNATC	1 cut(s)	399
BsaJI	CCNNGG	2 cut(s)	49, 568
BsaWI	WCCGGW	1 cut(s)	624
Bsc4I	CCNNNNNNNGG	2 cut(s)	33, 209
Bse118I	RCCGGY	2 cut(s)	4, 624
Bse1I	ACTGG	1 cut(s)	590
Bse3DI	GCAATG	1 cut(s)	376
Bse8I	GATNNNNATC	1 cut(s)	399
BseDI	CCNNGG	2 cut(s)	49, 568
BseGI	GGATG	3 cut(s)	45, 349, 400
BseJI	GATNNNNATC	1 cut(s)	399
BseLI	CCNNNNNNNGG	2 cut(s)	33, 209
BseMI	GCAATG	1 cut(s)	376
BseMII	CTCAG	1 cut(s)	362
BseNI	ACTGG	1 cut(s)	590
BseXI	GCAGC	2 cut(s)	84, 565
BsgI	GTGCAG	1 cut(s)	768
Bsh1285I	CGRYCG	1 cut(s)	133
BshTI	ACCGGT	1 cut(s)	624
BsiEI	CGRYCG	1 cut(s)	133
BsiSI	CCGG	2 cut(s)	5, 625
BslFI	GGGAC	1 cut(s)	718
BslI	CCNNNNNNNGG	2 cut(s)	33, 209
BsmAI	GTCTC	1 cut(s)	511
BsmFI	GGGAC	1 cut(s)	718
Bsp143I	GATC	1 cut(s)	424
Bsp19I	CCATGG	1 cut(s)	568
BspCNI	CTCAG	1 cut(s)	361
BspHI	TCATGA	1 cut(s)	607
BspMI	ACCTGC	1 cut(s)	88
BspOI	GCTAGC	1 cut(s)	87
BsrDI	GCAATG	1 cut(s)	376
BsrFI	RCCGGY	2 cut(s)	4, 624
BsrI	ACTGG	1 cut(s)	590
BssAI	RCCGGY	2 cut(s)	4, 624
BssECI	CCNNGG	2 cut(s)	49, 568
BssMI	GATC	1 cut(s)	424
BssT1I	CCWWGG	2 cut(s)	49, 568
Bst4CI	ACNGT	5 cut(s)	58, 134, 212, 266, 755
BstC8I	GCNNGC	2 cut(s)	6, 85
BstDEI	CTNAG	1 cut(s)	348
BstDSI	CCRYGG	1 cut(s)	568
BstF5I	GGATG	3 cut(s)	45, 349, 400
BstKTI	GATC	1 cut(s)	427
BstMAI	GTCTC	1 cut(s)	511
BstMBI	GATC	1 cut(s)	424
BstMCI	CGRYCG	1 cut(s)	133
BstMWI	GCNNNNNNNGC	1 cut(s)	366
BstSFI	CTRYAG	1 cut(s)	222
BstV1I	GCAGC	2 cut(s)	84, 565
BstV2I	GAAGAC	1 cut(s)	667
BstX2I	RGATCY	1 cut(s)	424
BstYI	RGATCY	1 cut(s)	424
BtgI	CCRYGG	1 cut(s)	568
BtsCI	GGATG	3 cut(s)	45, 349, 400
BtsI	GCAGTG	1 cut(s)	652
BtsIMutI	CAGTG	2 cut(s)	597, 652
BveI	ACCTGC	1 cut(s)	88
Cac8I	GCNNGC	2 cut(s)	6, 85
CciI	TCATGA	1 cut(s)	607
Cfr10I	RCCGGY	2 cut(s)	4, 624
Csp6I	GTAC	1 cut(s)	497
CspAI	ACCGGT	1 cut(s)	624
CviAII	CATG	5 cut(s)	321, 340, 408, 569, 608
CviQI	GTAC	1 cut(s)	497
DdeI	CTNAG	1 cut(s)	348
DpnI	GATC	1 cut(s)	426
DpnII	GATC	1 cut(s)	424
DraI	TTTAAA	1 cut(s)	483
Eco130I	CCWWGG	2 cut(s)	49, 568
Eco57I	CTGAAG	1 cut(s)	264
EcoT14I	CCWWGG	2 cut(s)	49, 568
EcoT22I	ATGCAT	1 cut(s)	413
ErhI	CCWWGG	2 cut(s)	49, 568
FaeI	CATG	5 cut(s)	324, 343, 411, 572, 611
FaiI	YATR	9 cut(s)	43, 234, 322, 341, 409, 441, 570, 609, 721
FaqI	GGGAC	1 cut(s)	718
FatI	CATG	5 cut(s)	320, 339, 407, 568, 607
FblI	GTMKAC	1 cut(s)	129
Fnu4HI	GCNGC	2 cut(s)	73, 554
FokI	GGATG	3 cut(s)	32, 356, 387
Fsp4HI	GCNGC	2 cut(s)	73, 554
FspBI	CTAG	5 cut(s)	84, 146, 500, 504, 525
GluI	GCNGC	2 cut(s)	73, 554
GsuI	CTGGAG	1 cut(s)	449
HapII	CCGG	2 cut(s)	5, 625
Hin1II	CATG	5 cut(s)	324, 343, 411, 572, 611
HincII	GTYRAC	1 cut(s)	130
HindII	GTYRAC	1 cut(s)	130
HinfI	GANTC	4 cut(s)	23, 395, 455, 659
HpaII	CCGG	2 cut(s)	5, 625
HphI	GGTGA	1 cut(s)	170
Hpy166II	GTNNAC	2 cut(s)	130, 269
Hpy188I	TCNGA	5 cut(s)	22, 217, 307, 333, 516
Hpy188III	TCNNGA	5 cut(s)	146, 428, 579, 608, 663
Hpy8I	GTNNAC	2 cut(s)	130, 269
HpyAV	CCTTC	5 cut(s)	166, 191, 251, 288, 427
HpyCH4III	ACNGT	5 cut(s)	58, 134, 212, 266, 755
HpyCH4V	TGCA	7 cut(s)	72, 339, 369, 411, 553, 639, 749
HpyF10VI	GCNNNNNNNGC	1 cut(s)	366
HpyF3I	CTNAG	1 cut(s)	348
Hsp92II	CATG	5 cut(s)	324, 343, 411, 572, 611
KroI	GCCGGC	1 cut(s)	4
KroNI	GCCGGC	1 cut(s)	6
Kzo9I	GATC	1 cut(s)	424
LpnPI	CCDG	9 cut(s)	18, 93, 198, 374, 413, 465, 603, 638, 676
Lsp1109I	GCAGC	2 cut(s)	84, 565
LweI	GCATC	4 cut(s)	208, 334, 420, 626
MaeI	CTAG	5 cut(s)	84, 146, 500, 504, 525
MaeIII	GTNAC	1 cut(s)	592
MalI	GATC	1 cut(s)	426
MboI	GATC	1 cut(s)	424
MboII	GAAGA	2 cut(s)	404, 667
MfeI	CAATTG	1 cut(s)	471
MflI	RGATCY	1 cut(s)	424
MluCI	AATT	3 cut(s)	316, 471, 603
MmeI	TCCRAC	1 cut(s)	147
MnlI	CCTC	6 cut(s)	25, 28, 59, 118, 457, 661
Mph1103I	ATGCAT	1 cut(s)	413
MroNI	GCCGGC	1 cut(s)	4
MseI	TTAA	4 cut(s)	12, 99, 482, 769
MslI	CAYNNNNRTG	1 cut(s)	242
MspI	CCGG	2 cut(s)	5, 625
MunI	CAATTG	1 cut(s)	471
MwoI	GCNNNNNNNGC	1 cut(s)	366
NaeI	GCCGGC	1 cut(s)	6
NcoI	CCATGG	1 cut(s)	568
NdeII	GATC	1 cut(s)	424
NgoMIV	GCCGGC	1 cut(s)	4
NheI	GCTAGC	1 cut(s)	83
NlaIII	CATG	5 cut(s)	324, 343, 411, 572, 611
NmuCI	GTSAC	1 cut(s)	592
NsiI	ATGCAT	1 cut(s)	413
PagI	TCATGA	1 cut(s)	607
PdiI	GCCGGC	1 cut(s)	6
PfeI	GAWTC	4 cut(s)	23, 395, 455, 659
PinAI	ACCGGT	1 cut(s)	624
PkrI	GCNGC	2 cut(s)	74, 555
PsuI	RGATCY	1 cut(s)	424
RsaI	GTAC	1 cut(s)	498
RsaNI	GTAC	1 cut(s)	497
RseI	CAYNNNNRTG	1 cut(s)	242
SalI	GTCGAC	1 cut(s)	128
SaqAI	TTAA	4 cut(s)	12, 99, 482, 769
SatI	GCNGC	2 cut(s)	73, 554
Sau3AI	GATC	1 cut(s)	424
SfaNI	GCATC	4 cut(s)	208, 334, 420, 626
SfcI	CTRYAG	1 cut(s)	222
SmiMI	CAYNNNNRTG	1 cut(s)	242
Sse9I	AATT	3 cut(s)	316, 471, 603
SspMI	CTAG	5 cut(s)	84, 146, 500, 504, 525
StyI	CCWWGG	2 cut(s)	49, 568
TaaI	ACNGT	5 cut(s)	58, 134, 212, 266, 755
TaqI	TCGA	1 cut(s)	129
TasI	AATT	3 cut(s)	316, 471, 603
TfiI	GAWTC	4 cut(s)	23, 395, 455, 659
Tru1I	TTAA	4 cut(s)	12, 99, 482, 769
Tru9I	TTAA	4 cut(s)	12, 99, 482, 769
TscAI	CASTG	2 cut(s)	597, 652
TseFI	GTSAC	1 cut(s)	592
TseI	GCWGC	2 cut(s)	72, 553
Tsp45I	GTSAC	1 cut(s)	592
TspDTI	ATGAA	4 cut(s)	309, 596, 624, 748
TspRI	CASTG	2 cut(s)	597, 652
XapI	RAATTY	1 cut(s)	603
XbaI	TCTAGA	1 cut(s)	145
XcmI	CCANNNNNNNNNTGG	1 cut(s)	624
XmiI	GTMKAC	1 cut(s)	129
XspI	CTAG	5 cut(s)	84, 146, 500, 504, 525
Zsp2I	ATGCAT	1 cut(s)	413

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.