Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0001744

Physical Location & Seq

Genomic Coordinates Reverse (-)

17488709 .. 17490031

Gene Structure 1323 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0187600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 291 bp

ATGGCGAGCAAACCAGGAGGAGGAGGAGGAGCGAGAAAGCCAGCAGCTGATCAGGGAAGCGATGCGAAGTTAGAGCAGGCAATGAAGGACAGTCCGTACGTCCAATCCGATAACTTGGAGGATTACAAGCGCCAGGGGTACGGAACCGAGGGACATCAACAGGTCCAGCCGGGTCGGGGCGCCGGATCCACCGATGGTCCGACTGTTTCCGGGGCTAATGTTTCCTCCAAGGCGGATGTTACCGCCACTGAAACTATCAACCGCCAAGGAGTAAATAAAGACGAACACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000295 GO:0003674 GO:0005215 GO:0005346 GO:0005347 GO:0005488 GO:0005509 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006811 GO:0006820 GO:0006839 GO:0006855 GO:0006862 GO:0006950 GO:0006979 GO:0008150 GO:0008509 GO:0008514 GO:0009536 GO:0009987 GO:0010035 GO:0010038 GO:0010941 GO:0015075 GO:0015215 GO:0015216 GO:0015217 GO:0015238 GO:0015605 GO:0015711 GO:0015748 GO:0015865 GO:0015866 GO:0015867 GO:0015868 GO:0015893 GO:0015931 GO:0015932 GO:0016020 GO:0016021 GO:0019866 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0033554 GO:0034220 GO:0034599 GO:0042221 GO:0042493 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051503 GO:0051592 GO:0051716 GO:0055085 GO:0065007 GO:0070887 GO:0071241 GO:0071248 GO:0071277 GO:0071702 GO:0071705 GO:0098656 GO:1901264 GO:1901505 GO:1901679

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

96

Amino Acids

9.9

Weight (kDa)

5.57

Isoelectric Point (pI)

40.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LEA_6	PF10714	15 - 89	2.7e-28	Late embryogenesis abundant protein 18

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001744)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G39900
fragaria_vesca	FvH4_1g20820 FvH4_1g20820 FvH4_1g20820 FvH4_1g20820
malus_domestica	MD01G1030700.v1.1 MD15G1323600.v1.1
prunus_persica	Prupe.6G187400_v2.0.a1 Prupe.6G187400_v2.0.a1 Prupe.6G187400_v2.0.a1 Prupe.6G187400_v2.0.a1 Prupe.6G187400_v2.0.a1 Prupe.6G187400_v2.0.a1 Prupe.6G187400_v2.0.a1 Prupe.6G187400_v2.0.a1 Prupe.6G187400_v2.0.a1 Prupe.6G187400_v2.0.a1 Prupe.6G187400_v2.0.a1 Prupe.6G187400_v2.0.a1 Prupe.6G187400_v2.0.a1 Prupe.6G187400_v2.0.a1 Prupe.6G187400_v2.0.a1 Prupe.6G187400_v2.0.a1 Prupe.6G187400_v2.0.a1 Prupe.6G187400_v2.0.a1 Prupe.6G187400_v2.0.a1 Prupe.6G187400_v2.0.a1 Prupe.6G187400_v2.0.a1 Prupe.6G187400_v2.0.a1 Prupe.6G187400_v2.0.a1 Prupe.6G187400_v2.0.a1 Prupe.6G187400_v2.0.a1
pyrus_communis	pycom01g05830 pycom15g28550
rosa_chinensis	RchiOBHm_Chr2g0113431 RchiOBHm_Chr2g0113441
rosa_laevigata	RLG00000018063
rosa_multiflora	Rmu_sc0007415.1_g000016
rosa_roxburghii	Rroxscaffold_2G00129260 Rroxscaffold_2G00129920
rosa_rugosa	Rorug02G0187400 Rorug02G0187500 Rorug02G0187600
rosa_samantha	Rh2AG242000 Rh2BG255800 Rh2CG246100 Rh2DG249900
rosa_wichuraiana	Rw2G018880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	179
AciI	CCGC	3 cut(s)	233, 243, 262
AclWI	GGATC	2 cut(s)	180, 193
AcyI	GRCGYC	1 cut(s)	180
AfaI	GTAC	2 cut(s)	98, 140
AfiI	CCNNNNNNNGG	2 cut(s)	20, 176
AjnI	CCWGG	2 cut(s)	13, 132
AluBI	AGCT	1 cut(s)	47
AluI	AGCT	1 cut(s)	47
AlwI	GGATC	2 cut(s)	180, 193
AlwNI	CAGNNNCTG	1 cut(s)	47
ApeKI	GCWGC	1 cut(s)	44
AspLEI	GCGC	2 cut(s)	132, 182
AspS9I	GGNCC	2 cut(s)	163, 197
AsuC2I	CCSGG	2 cut(s)	171, 211
AvaII	GGWCC	2 cut(s)	163, 197
BamHI	GGATCC	1 cut(s)	185
BanI	GGYRCC	1 cut(s)	179
BbvI	GCAGC	1 cut(s)	56
BccI	CCATC	1 cut(s)	188
BciT130I	CCWGG	2 cut(s)	15, 134
BclI	TGATCA	1 cut(s)	49
BcnI	CCSGG	2 cut(s)	171, 211
BfoI	RGCGCY	2 cut(s)	133, 183
BisI	GCNGC	1 cut(s)	45
BlsI	GCNGC	1 cut(s)	46
Bme1390I	CCNGG	4 cut(s)	15, 134, 171, 211
Bme18I	GGWCC	2 cut(s)	163, 197
BmgT120I	GGNCC	2 cut(s)	163, 197
BmiI	GGNNCC	3 cut(s)	145, 181, 187
BmrFI	CCNGG	4 cut(s)	15, 134, 171, 211
BmsI	GCATC	1 cut(s)	52
BpuMI	CCSGG	2 cut(s)	171, 211
BsaHI	GRCGYC	1 cut(s)	180
BsaJI	CCNNGG	5 cut(s)	133, 147, 210, 228, 265
Bsc4I	CCNNNNNNNGG	2 cut(s)	20, 176
Bse3DI	GCAATG	1 cut(s)	87
BseBI	CCWGG	2 cut(s)	15, 134
BseDI	CCNNGG	5 cut(s)	133, 147, 210, 228, 265
BseGI	GGATG	1 cut(s)	241
BseLI	CCNNNNNNNGG	2 cut(s)	20, 176
BseMI	GCAATG	1 cut(s)	87
BseRI	GAGGAG	4 cut(s)	33, 36, 39, 42
BseXI	GCAGC	1 cut(s)	56
BshNI	GGYRCC	1 cut(s)	179
BsiSI	CCGG	3 cut(s)	170, 183, 210
BsiWI	CGTACG	1 cut(s)	96
BslFI	GGGAC	1 cut(s)	165
BslI	CCNNNNNNNGG	2 cut(s)	20, 176
BsmFI	GGGAC	1 cut(s)	165
Bsp143I	GATC	2 cut(s)	49, 185
BspACI	CCGC	3 cut(s)	233, 243, 262
BspLI	GGNNCC	3 cut(s)	145, 181, 187
BspPI	GGATC	2 cut(s)	180, 193
BspT107I	GGYRCC	1 cut(s)	179
BsrDI	GCAATG	1 cut(s)	87
BssECI	CCNNGG	5 cut(s)	133, 147, 210, 228, 265
BssMI	GATC	2 cut(s)	49, 185
BssNI	GRCGYC	1 cut(s)	180
BssT1I	CCWWGG	2 cut(s)	228, 265
Bst2UI	CCWGG	2 cut(s)	15, 134
Bst4CI	ACNGT	2 cut(s)	92, 205
BstACI	GRCGYC	1 cut(s)	180
BstC8I	GCNNGC	3 cut(s)	7, 42, 78
BstF5I	GGATG	1 cut(s)	241
BstH2I	RGCGCY	2 cut(s)	133, 183
BstHHI	GCGC	2 cut(s)	132, 182
BstKTI	GATC	2 cut(s)	52, 188
BstMBI	GATC	2 cut(s)	49, 185
BstNI	CCWGG	2 cut(s)	15, 134
BstSCI	CCNGG	4 cut(s)	13, 132, 169, 209
BstV1I	GCAGC	1 cut(s)	56
BstX2I	RGATCY	1 cut(s)	185
BstYI	RGATCY	1 cut(s)	185
BtgZI	GCGATG	1 cut(s)	75
BtsCI	GGATG	1 cut(s)	241
BtsIMutI	CAGTG	2 cut(s)	246, 286
Cac8I	GCNNGC	3 cut(s)	7, 42, 78
CaiI	CAGNNNCTG	1 cut(s)	47
CfoI	GCGC	2 cut(s)	132, 182
Cfr13I	GGNCC	2 cut(s)	163, 197
Csp6I	GTAC	2 cut(s)	97, 139
CviJI	RGCY	4 cut(s)	40, 47, 169, 215
CviKI_1	RGCY	4 cut(s)	40, 47, 169, 215
CviQI	GTAC	2 cut(s)	97, 139
DinI	GGCGCC	1 cut(s)	181
DpnI	GATC	2 cut(s)	51, 187
DpnII	GATC	2 cut(s)	49, 185
EciI	GGCGGA	1 cut(s)	248
Eco130I	CCWWGG	2 cut(s)	228, 265
Eco47I	GGWCC	2 cut(s)	163, 197
EcoRII	CCWGG	2 cut(s)	13, 132
EcoT14I	CCWWGG	2 cut(s)	228, 265
EgeI	GGCGCC	1 cut(s)	181
EheI	GGCGCC	1 cut(s)	181
ErhI	CCWWGG	2 cut(s)	228, 265
FaqI	GGGAC	1 cut(s)	165
FbaI	TGATCA	1 cut(s)	49
Fnu4HI	GCNGC	1 cut(s)	45
FokI	GGATG	1 cut(s)	248
Fsp4HI	GCNGC	1 cut(s)	45
GlaI	GCGC	2 cut(s)	131, 181
GluI	GCNGC	1 cut(s)	45
HaeII	RGCGCY	2 cut(s)	133, 183
HapII	CCGG	3 cut(s)	170, 183, 210
HhaI	GCGC	2 cut(s)	132, 182
Hin1I	GRCGYC	1 cut(s)	180
Hin6I	GCGC	2 cut(s)	130, 180
HinP1I	GCGC	2 cut(s)	130, 180
HpaII	CCGG	3 cut(s)	170, 183, 210
Hpy188I	TCNGA	2 cut(s)	109, 201
HpyAV	CCTTC	1 cut(s)	79
HpyCH4III	ACNGT	2 cut(s)	92, 205
HpyCH4IV	ACGT	1 cut(s)	99
HpySE526I	ACGT	1 cut(s)	99
Hsp92I	GRCGYC	1 cut(s)	180
HspAI	GCGC	2 cut(s)	130, 180
KasI	GGCGCC	1 cut(s)	179
Ksp22I	TGATCA	1 cut(s)	49
Kzo9I	GATC	2 cut(s)	49, 185
LmnI	GCTCC	1 cut(s)	29
Lsp1109I	GCAGC	1 cut(s)	56
LweI	GCATC	1 cut(s)	52
MaeII	ACGT	1 cut(s)	99
MaeIII	GTNAC	1 cut(s)	238
MalI	GATC	2 cut(s)	51, 187
MboI	GATC	2 cut(s)	49, 185
MflI	RGATCY	1 cut(s)	185
Mly113I	GGCGCC	1 cut(s)	180
MmeI	TCCRAC	1 cut(s)	224
MnlI	CCTC	7 cut(s)	11, 14, 17, 20, 112, 142, 235
MspA1I	CMGCKG	1 cut(s)	47
MspI	CCGG	3 cut(s)	170, 183, 210
MspR9I	CCNGG	4 cut(s)	15, 134, 171, 211
MvaI	CCWGG	2 cut(s)	15, 134
NarI	GGCGCC	1 cut(s)	180
NciI	CCSGG	2 cut(s)	171, 211
NdeII	GATC	2 cut(s)	49, 185
NlaIV	GGNNCC	3 cut(s)	145, 181, 187
PcsI	WCGNNNNNNNCGW	1 cut(s)	105
Pfl23II	CGTACG	1 cut(s)	96
PkrI	GCNGC	1 cut(s)	46
PluTI	GGCGCC	1 cut(s)	183
Psp6I	CCWGG	2 cut(s)	13, 132
PspGI	CCWGG	2 cut(s)	13, 132
PspLI	CGTACG	1 cut(s)	96
PspN4I	GGNNCC	3 cut(s)	145, 181, 187
PspPI	GGNCC	2 cut(s)	163, 197
PstNI	CAGNNNCTG	1 cut(s)	47
PsuI	RGATCY	1 cut(s)	185
PvuII	CAGCTG	1 cut(s)	47
RsaI	GTAC	2 cut(s)	98, 140
RsaNI	GTAC	2 cut(s)	97, 139
SatI	GCNGC	1 cut(s)	45
Sau3AI	GATC	2 cut(s)	49, 185
Sau96I	GGNCC	2 cut(s)	163, 197
ScrFI	CCNGG	4 cut(s)	15, 134, 171, 211
SetI	ASST	3 cut(s)	49, 102, 165
SfaNI	GCATC	1 cut(s)	52
SfoI	GGCGCC	1 cut(s)	181
SinI	GGWCC	2 cut(s)	163, 197
SsiI	CCGC	3 cut(s)	233, 243, 262
SspDI	GGCGCC	1 cut(s)	179
StyD4I	CCNGG	4 cut(s)	13, 132, 169, 209
StyI	CCWWGG	2 cut(s)	228, 265
TaaI	ACNGT	2 cut(s)	92, 205
TaiI	ACGT	1 cut(s)	102
TscAI	CASTG	1 cut(s)	253
TseI	GCWGC	1 cut(s)	44
TspDTI	ATGAA	1 cut(s)	98
TspGWI	ACGGA	2 cut(s)	84, 156
TspRI	CASTG	1 cut(s)	253
VpaK11BI	GGWCC	2 cut(s)	163, 197

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.