MD01G1030700.v1.1

isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr01
OG0001744
Physical Location & Seq
Reverse (-)
10857942 .. 10858933
992 bp
Loading structure...
UTR
Exon/CDS
Intron
MD01G1030700.v1.1.491

Sequence Viewer

Length: 174 bp
ATGGATCTGGAGAAGGGATATATTCAAGCACCAGAGTCGAAAGAGGAAGCTGTTGAAAGTTTAAAACGCGAGGGCTTACTAGCTAGAGTGTGTCGGAGACAGGCAAGCCTAAAAGTTGGTGGGAAACTTTTGCAGCTTCTATTCAACCATGGCACTTCAAGAGAATACTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

58

Amino Acids

6.51

Weight (kDa)

8.89

Isoelectric Point (pI)

46.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 69
AclWI GGATC 1 cut(s) 12
AgsI TTSAA 4 cut(s) 26, 56, 145, 159
AluBI AGCT 3 cut(s) 50, 83, 136
AluI AGCT 3 cut(s) 50, 83, 136
Alw26I GTCTC 1 cut(s) 91
AlwI GGATC 1 cut(s) 12
ApeKI GCWGC 1 cut(s) 133
BbvI GCAGC 1 cut(s) 145
BcgI CGANNNNNNTGC 2 cut(s) 18, 52
BcoDI GTCTC 1 cut(s) 91
BfaI CTAG 2 cut(s) 80, 84
BisI GCNGC 1 cut(s) 134
BlsI GCNGC 1 cut(s) 135
BpmI CTGGAG 1 cut(s) 29
BsaJI CCNNGG 1 cut(s) 148
BseDI CCNNGG 1 cut(s) 148
BseXI GCAGC 1 cut(s) 145
Bsh1236I CGCG 1 cut(s) 69
BsmAI GTCTC 1 cut(s) 91
Bsp143I GATC 1 cut(s) 4
Bsp19I CCATGG 1 cut(s) 148
BspFNI CGCG 1 cut(s) 69
BspPI GGATC 1 cut(s) 12
BssECI CCNNGG 1 cut(s) 148
BssMI GATC 1 cut(s) 4
BssT1I CCWWGG 1 cut(s) 148
BstC8I GCNNGC 1 cut(s) 106
BstDSI CCRYGG 1 cut(s) 148
BstFNI CGCG 1 cut(s) 69
BstKTI GATC 1 cut(s) 7
BstMAI GTCTC 1 cut(s) 91
BstMBI GATC 1 cut(s) 4
BstUI CGCG 1 cut(s) 69
BstV1I GCAGC 1 cut(s) 145
BstX2I RGATCY 1 cut(s) 4
BstYI RGATCY 1 cut(s) 4
BtgI CCRYGG 1 cut(s) 148
Cac8I GCNNGC 1 cut(s) 106
CviAII CATG 1 cut(s) 149
CviJI RGCY 5 cut(s) 50, 75, 83, 108, 136
CviKI_1 RGCY 5 cut(s) 50, 75, 83, 108, 136
DpnI GATC 1 cut(s) 6
DpnII GATC 1 cut(s) 4
DraI TTTAAA 1 cut(s) 63
Eco130I CCWWGG 1 cut(s) 148
EcoT14I CCWWGG 1 cut(s) 148
ErhI CCWWGG 1 cut(s) 148
FaeI CATG 1 cut(s) 152
FaiI YATR 2 cut(s) 21, 150
FatI CATG 1 cut(s) 148
Fnu4HI GCNGC 1 cut(s) 134
Fsp4HI GCNGC 1 cut(s) 134
FspBI CTAG 2 cut(s) 80, 84
GluI GCNGC 1 cut(s) 134
GsuI CTGGAG 1 cut(s) 29
Hin1II CATG 1 cut(s) 152
HinfI GANTC 1 cut(s) 35
Hpy188I TCNGA 1 cut(s) 96
Hpy188III TCNNGA 2 cut(s) 8, 159
HpyAV CCTTC 1 cut(s) 7
HpyCH4V TGCA 1 cut(s) 133
Hsp92II CATG 1 cut(s) 152
Kzo9I GATC 1 cut(s) 4
LpnPI CCDG 2 cut(s) 45, 86
Lsp1109I GCAGC 1 cut(s) 145
MaeI CTAG 2 cut(s) 80, 84
MalI GATC 1 cut(s) 6
MboI GATC 1 cut(s) 4
MflI RGATCY 1 cut(s) 4
MlyI GAGTC 1 cut(s) 44
MmeI TCCRAC 1 cut(s) 74
MnlI CCTC 2 cut(s) 37, 64
MseI TTAA 1 cut(s) 62
MvnI CGCG 1 cut(s) 69
NcoI CCATGG 1 cut(s) 148
NdeII GATC 1 cut(s) 4
NlaIII CATG 1 cut(s) 152
PkrI GCNGC 1 cut(s) 135
PleI GAGTC 1 cut(s) 43
PpsI GAGTC 1 cut(s) 43
PsuI RGATCY 1 cut(s) 4
SaqAI TTAA 1 cut(s) 62
SatI GCNGC 1 cut(s) 134
Sau3AI GATC 1 cut(s) 4
SchI GAGTC 1 cut(s) 44
SetI ASST 3 cut(s) 52, 85, 138
SspMI CTAG 2 cut(s) 80, 84
StyI CCWWGG 1 cut(s) 148
TaqI TCGA 1 cut(s) 38
Tru1I TTAA 1 cut(s) 62
Tru9I TTAA 1 cut(s) 62
TseI GCWGC 1 cut(s) 133
XspI CTAG 2 cut(s) 80, 84
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.