Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0001744

Physical Location & Seq

Genomic Coordinates Reverse (-)

17480294 .. 17481773

Gene Structure 1480 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0187400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1101 bp

ATGGCAACAGATTCATCATCCTCCGAGCAATTGGAGGAAGATCTATCACTATCCGATCTTCCCCACAATTTCACCAAATCAGATCGAAACCACTCAACTAGTACTAAACCTGATAGTGGTAAGGTCATCGAAGCCGAAGAAGAATTCGACTTTGGCTCTTCCATGCGCAGCAGCTCTTTCTTGGCAGATACAACAATGTGCACCGCCGATGAACTCTTTTTCAAGGGACAGATTCTGCCTCTGCGTCTCTCCGTCAGCTCCGACAGCGGCTTAACCAAGCTGAACCCGGCACAGGGGTTATCTGTGTTGGGTTCCGAGTCCATGGACCGACATGTTCCATGTTACATGTCAGGTTTCAAAAGCATTAGCCACGGCAGAAGCAGTAGCTGCAGCAGTACTAGAATTAGTCCCAACTCGTCAAGAAGCAACAGCAACAGTAGCAGCTCCACCGCCACAACAAACACTAGCATTGCGAATTCGAAGCCAAGAGTAGTACCTGTCCGAAACCAGTTTTACACGCAGCCGAGCCCGAAACCTCAGATTCATGTTTCAAATGGGGGACGGCTAGAAAAAGTAGGCAGCCGATCGAGCAAGAAATCGTCGTCGATATGGGACTTTTTCCGGTTGGGATTGGTACGAACACCTGAACAGAACCTTAATAAGGTACTTCGTAGTAACAGTGCTCGTGTTAAAAGCACAAGAATTAGTGTCAGTCGCAATAGCAGCGTTAATAGCAACAATAGTACTTCTTTTAGCACCACCAACAACAAGACTACTAGTACGGTTGCCAATGGTACTATTAGTGATGGTGAAAAGAACGTCACTAATACTACTGCAGCATTGAACTCGGAGAAGAGTCCACAGAGATTTTTCAACGGGTGTAAGTGCTCGTTCGAAGCGGTGGCATCCAATGCTGTCGTCCCGAAAAGTAGCTTGGCTATCTTTAGCGAAGCTACGCATGAGAAGAAAGCCGATAAAGTAGCGGCAGACTTGAAGATGAAGAAGAAGAAGAAGAAGAAGAAGAAGAACGGTAGTAAGCAAAAGCAGCTAAAGCAAGACATGTCGCATCACAGAACGTATGAATGGCTAAAGGGGCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

366

Amino Acids

39.89

Weight (kDa)

9.88

Isoelectric Point (pI)

49.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001744)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G39900
fragaria_vesca	FvH4_1g20820 FvH4_1g20820 FvH4_1g20820 FvH4_1g20820
malus_domestica	MD01G1030700.v1.1 MD15G1323600.v1.1
prunus_persica	Prupe.6G187400_v2.0.a1 Prupe.6G187400_v2.0.a1 Prupe.6G187400_v2.0.a1 Prupe.6G187400_v2.0.a1 Prupe.6G187400_v2.0.a1 Prupe.6G187400_v2.0.a1 Prupe.6G187400_v2.0.a1 Prupe.6G187400_v2.0.a1 Prupe.6G187400_v2.0.a1 Prupe.6G187400_v2.0.a1 Prupe.6G187400_v2.0.a1 Prupe.6G187400_v2.0.a1 Prupe.6G187400_v2.0.a1 Prupe.6G187400_v2.0.a1 Prupe.6G187400_v2.0.a1 Prupe.6G187400_v2.0.a1 Prupe.6G187400_v2.0.a1 Prupe.6G187400_v2.0.a1 Prupe.6G187400_v2.0.a1 Prupe.6G187400_v2.0.a1 Prupe.6G187400_v2.0.a1 Prupe.6G187400_v2.0.a1 Prupe.6G187400_v2.0.a1 Prupe.6G187400_v2.0.a1 Prupe.6G187400_v2.0.a1
pyrus_communis	pycom01g05830 pycom15g28550
rosa_chinensis	RchiOBHm_Chr2g0113431 RchiOBHm_Chr2g0113441
rosa_laevigata	RLG00000018063
rosa_multiflora	Rmu_sc0007415.1_g000016
rosa_roxburghii	Rroxscaffold_2G00129260 Rroxscaffold_2G00129920
rosa_rugosa	Rorug02G0187400 Rorug02G0187500 Rorug02G0187600
rosa_samantha	Rh2AG242000 Rh2BG255800 Rh2CG246100 Rh2DG249900
rosa_wichuraiana	Rw2G018880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	167
AciI	CCGC	5 cut(s)	204, 267, 450, 899, 983
AcsI	RAATTY	2 cut(s)	143, 475
AfaI	GTAC	8 cut(s)	103, 397, 495, 636, 666, 745, 781, 796
AfiI	CCNNNNNNNGG	4 cut(s)	116, 292, 293, 661
AflIII	ACRYGT	3 cut(s)	331, 345, 1059
AgsI	TTSAA	6 cut(s)	223, 358, 552, 844, 874, 994
AhlI	ACTAGT	2 cut(s)	98, 776
AjuI	GAANNNNNNNTTGG	4 cut(s)	135, 167, 917, 949
AluBI	AGCT	8 cut(s)	174, 258, 280, 387, 444, 933, 953, 1048
AluI	AGCT	8 cut(s)	174, 258, 280, 387, 444, 933, 953, 1048
Alw21I	GWGCWC	3 cut(s)	203, 685, 890
Alw26I	GTCTC	1 cut(s)	251
Alw44I	GTGCAC	1 cut(s)	199
AlwNI	CAGNNNCTG	2 cut(s)	235, 387
ApaLI	GTGCAC	1 cut(s)	199
ApoI	RAATTY	2 cut(s)	143, 475
AspLEI	GCGC	1 cut(s)	168
AspS9I	GGNCC	1 cut(s)	325
AsuC2I	CCSGG	1 cut(s)	287
AsuHPI	GGTGA	2 cut(s)	64, 821
AsuII	TTCGAA	2 cut(s)	479, 894
AvaII	GGWCC	1 cut(s)	325
BaeGI	GKGCMC	1 cut(s)	203
BanII	GRGCYC	1 cut(s)	530
BauI	CACGAG	1 cut(s)	684
Bbv12I	GWGCWC	3 cut(s)	203, 685, 890
BccI	CCATC	1 cut(s)	800
BceAI	ACGGC	2 cut(s)	388, 578
BcgI	CGANNNNNNTGC	2 cut(s)	828, 862
BcnI	CCSGG	1 cut(s)	287
BcoDI	GTCTC	1 cut(s)	251
BcuI	ACTAGT	2 cut(s)	98, 776
BfaI	CTAG	5 cut(s)	99, 399, 465, 566, 777
BfmI	CTRYAG	2 cut(s)	388, 834
BglII	AGATCT	1 cut(s)	40
BmcAI	AGTACT	3 cut(s)	103, 397, 745
Bme1390I	CCNGG	1 cut(s)	287
Bme18I	GGWCC	1 cut(s)	325
BmgT120I	GGNCC	1 cut(s)	325
BmiI	GGNNCC	1 cut(s)	313
BmrFI	CCNGG	1 cut(s)	287
BmsI	GCATC	2 cut(s)	914, 1075
Bpu14I	TTCGAA	2 cut(s)	479, 894
BpuMI	CCSGG	1 cut(s)	287
BsaJI	CCNNGG	2 cut(s)	321, 370
BsaWI	WCCGGW	1 cut(s)	621
Bsc4I	CCNNNNNNNGG	4 cut(s)	116, 292, 293, 661
Bse1I	ACTGG	1 cut(s)	508
Bse3DI	GCAATG	1 cut(s)	468
BseDI	CCNNGG	2 cut(s)	321, 370
BseGI	GGATG	2 cut(s)	17, 905
BseLI	CCNNNNNNNGG	4 cut(s)	116, 292, 293, 661
BseMI	GCAATG	1 cut(s)	468
BseMII	CTCAG	1 cut(s)	551
BseNI	ACTGG	1 cut(s)	508
BseSI	GKGCMC	1 cut(s)	203
Bsh1285I	CGRYCG	1 cut(s)	587
BsiEI	CGRYCG	1 cut(s)	587
BsiHKAI	GWGCWC	3 cut(s)	203, 685, 890
BsiSI	CCGG	2 cut(s)	287, 622
BslFI	GGGAC	5 cut(s)	240, 393, 573, 626, 905
BslI	CCNNNNNNNGG	4 cut(s)	116, 292, 293, 661
BsmAI	GTCTC	1 cut(s)	251
BsmBI	CGTCTC	1 cut(s)	251
BsmFI	GGGAC	5 cut(s)	240, 393, 573, 626, 905
Bsp119I	TTCGAA	2 cut(s)	479, 894
Bsp1286I	GDGCHC	4 cut(s)	203, 530, 685, 890
Bsp143I	GATC	4 cut(s)	40, 55, 82, 584
Bsp19I	CCATGG	1 cut(s)	321
BspACI	CCGC	5 cut(s)	204, 267, 450, 899, 983
BspCNI	CTCAG	1 cut(s)	550
BspLI	GGNNCC	1 cut(s)	313
BspMAI	CTGCAG	2 cut(s)	392, 838
BspQI	GCTCTTC	1 cut(s)	163
BspT104I	TTCGAA	2 cut(s)	479, 894
BsrDI	GCAATG	1 cut(s)	468
BsrI	ACTGG	1 cut(s)	508
BssECI	CCNNGG	2 cut(s)	321, 370
BssMI	GATC	4 cut(s)	40, 55, 82, 584
BssSI	CACGAG	1 cut(s)	684
BssT1I	CCWWGG	1 cut(s)	321
Bst2BI	CACGAG	1 cut(s)	684
Bst4CI	ACNGT	4 cut(s)	437, 680, 784, 1031
Bst6I	CTCTTC	2 cut(s)	163, 848
BstAPI	GCANNNNNTGC	2 cut(s)	387, 911
BstBI	TTCGAA	2 cut(s)	479, 894
BstDEI	CTNAG	1 cut(s)	537
BstDSI	CCRYGG	2 cut(s)	321, 370
BstENI	CCTNNNNNAGG	1 cut(s)	659
BstF5I	GGATG	2 cut(s)	17, 905
BstHHI	GCGC	1 cut(s)	168
BstKTI	GATC	4 cut(s)	43, 58, 85, 587
BstMAI	GTCTC	1 cut(s)	251
BstMBI	GATC	4 cut(s)	40, 55, 82, 584
BstMCI	CGRYCG	1 cut(s)	587
BstNSI	RCATGY	3 cut(s)	335, 349, 1063
BstSCI	CCNGG	1 cut(s)	285
BstSFI	CTRYAG	2 cut(s)	388, 834
BstSLI	GKGCMC	1 cut(s)	203
BstX2I	RGATCY	1 cut(s)	40
BstYI	RGATCY	1 cut(s)	40
BtgI	CCRYGG	2 cut(s)	321, 370
BtsCI	GGATG	2 cut(s)	17, 905
BtsIMutI	CAGTG	1 cut(s)	685
CaiI	CAGNNNCTG	2 cut(s)	235, 387
CfoI	GCGC	1 cut(s)	168
Cfr13I	GGNCC	1 cut(s)	325
CseI	GACGC	1 cut(s)	233
Csp6I	GTAC	8 cut(s)	102, 396, 494, 635, 665, 744, 780, 795
CviAII	CATG	8 cut(s)	163, 322, 332, 339, 346, 545, 959, 1060
CviQI	GTAC	8 cut(s)	102, 396, 494, 635, 665, 744, 780, 795
DdeI	CTNAG	1 cut(s)	537
DpnI	GATC	4 cut(s)	42, 57, 84, 586
DpnII	GATC	4 cut(s)	40, 55, 82, 584
Eam1104I	CTCTTC	2 cut(s)	163, 848
EarI	CTCTTC	2 cut(s)	163, 848
Eco130I	CCWWGG	1 cut(s)	321
Eco24I	GRGCYC	1 cut(s)	530
Eco47I	GGWCC	1 cut(s)	325
EcoNI	CCTNNNNNAGG	1 cut(s)	659
EcoRI	GAATTC	2 cut(s)	143, 475
EcoT14I	CCWWGG	1 cut(s)	321
EcoT38I	GRGCYC	1 cut(s)	530
ErhI	CCWWGG	1 cut(s)	321
Esp3I	CGTCTC	1 cut(s)	251
FaeI	CATG	8 cut(s)	166, 325, 335, 342, 349, 548, 962, 1063
FaqI	GGGAC	5 cut(s)	240, 393, 573, 626, 905
FatI	CATG	8 cut(s)	162, 321, 331, 338, 345, 544, 958, 1059
FokI	GGATG	2 cut(s)	4, 892
FriOI	GRGCYC	1 cut(s)	530
FspBI	CTAG	5 cut(s)	99, 399, 465, 566, 777
FspI	TGCGCA	1 cut(s)	167
GlaI	GCGC	1 cut(s)	167
HapII	CCGG	2 cut(s)	287, 622
HgaI	GACGC	1 cut(s)	233
HhaI	GCGC	1 cut(s)	168
Hin1II	CATG	8 cut(s)	166, 325, 335, 342, 349, 548, 962, 1063
Hin6I	GCGC	1 cut(s)	166
HinP1I	GCGC	1 cut(s)	166
HinfI	GANTC	5 cut(s)	11, 232, 317, 541, 856
HpaII	CCGG	2 cut(s)	287, 622
HphI	GGTGA	2 cut(s)	64, 821
Hpy166II	GTNNAC	2 cut(s)	201, 860
Hpy188I	TCNGA	8 cut(s)	25, 55, 82, 262, 316, 503, 540, 850
Hpy188III	TCNNGA	2 cut(s)	420, 922
Hpy8I	GTNNAC	2 cut(s)	201, 860
Hpy99I	CGWCG	2 cut(s)	604, 607
HpyCH4III	ACNGT	4 cut(s)	437, 680, 784, 1031
HpyCH4IV	ACGT	2 cut(s)	819, 1076
HpyCH4V	TGCA	3 cut(s)	201, 390, 836
HpyF3I	CTNAG	1 cut(s)	537
HpySE526I	ACGT	2 cut(s)	819, 1076
Hsp92II	CATG	8 cut(s)	166, 325, 335, 342, 349, 548, 962, 1063
HspAI	GCGC	1 cut(s)	166
Kzo9I	GATC	4 cut(s)	40, 55, 82, 584
LguI	GCTCTTC	1 cut(s)	163
LmnI	GCTCC	2 cut(s)	263, 449
LpnPI	CCDG	8 cut(s)	123, 278, 300, 336, 510, 521, 635, 657
LweI	GCATC	2 cut(s)	914, 1075
MaeI	CTAG	5 cut(s)	99, 399, 465, 566, 777
MaeII	ACGT	2 cut(s)	819, 1076
MaeIII	GTNAC	3 cut(s)	341, 674, 820
MalI	GATC	4 cut(s)	42, 57, 84, 586
MboI	GATC	4 cut(s)	40, 55, 82, 584
MfeI	CAATTG	1 cut(s)	29
MflI	RGATCY	1 cut(s)	40
MhlI	GDGCHC	4 cut(s)	203, 530, 685, 890
MluCI	AATT	6 cut(s)	29, 67, 143, 402, 475, 702
MlyI	GAGTC	2 cut(s)	326, 865
MmeI	TCCRAC	1 cut(s)	285
MnlI	CCTC	4 cut(s)	28, 31, 249, 546
MseI	TTAA	5 cut(s)	272, 657, 690, 729, 1099
MspA1I	CMGCKG	1 cut(s)	267
MspI	CCGG	2 cut(s)	287, 622
MspR9I	CCNGG	1 cut(s)	287
MunI	CAATTG	1 cut(s)	29
NciI	CCSGG	1 cut(s)	287
NcoI	CCATGG	1 cut(s)	321
NdeII	GATC	4 cut(s)	40, 55, 82, 584
NlaIII	CATG	8 cut(s)	166, 325, 335, 342, 349, 548, 962, 1063
NlaIV	GGNNCC	1 cut(s)	313
NmeAIII	GCCGAG	1 cut(s)	549
NmuCI	GTSAC	1 cut(s)	820
NsbI	TGCGCA	1 cut(s)	167
NspI	RCATGY	3 cut(s)	335, 349, 1063
NspV	TTCGAA	2 cut(s)	479, 894
PciI	ACATGT	3 cut(s)	331, 345, 1059
PciSI	GCTCTTC	1 cut(s)	163
PfeI	GAWTC	3 cut(s)	11, 232, 541
Ple19I	CGATCG	1 cut(s)	587
PleI	GAGTC	2 cut(s)	325, 864
PpsI	GAGTC	2 cut(s)	325, 864
PscI	ACATGT	3 cut(s)	331, 345, 1059
PspN4I	GGNNCC	1 cut(s)	313
PspPI	GGNCC	1 cut(s)	325
PstI	CTGCAG	2 cut(s)	392, 838
PstNI	CAGNNNCTG	2 cut(s)	235, 387
PsuI	RGATCY	1 cut(s)	40
PvuI	CGATCG	1 cut(s)	587
RsaI	GTAC	8 cut(s)	103, 397, 495, 636, 666, 745, 781, 796
RsaNI	GTAC	8 cut(s)	102, 396, 494, 635, 665, 744, 780, 795
SapI	GCTCTTC	1 cut(s)	163
SaqAI	TTAA	5 cut(s)	272, 657, 690, 729, 1099
Sau3AI	GATC	4 cut(s)	40, 55, 82, 584
Sau96I	GGNCC	1 cut(s)	325
ScaI	AGTACT	3 cut(s)	103, 397, 745
SchI	GAGTC	2 cut(s)	326, 865
ScrFI	CCNGG	1 cut(s)	287
SduI	GDGCHC	4 cut(s)	203, 530, 685, 890
SfaNI	GCATC	2 cut(s)	914, 1075
SfcI	CTRYAG	2 cut(s)	388, 834
SfuI	TTCGAA	2 cut(s)	479, 894
SinI	GGWCC	1 cut(s)	325
SpeI	ACTAGT	2 cut(s)	98, 776
Sse9I	AATT	6 cut(s)	29, 67, 143, 402, 475, 702
SsiI	CCGC	5 cut(s)	204, 267, 450, 899, 983
SspMI	CTAG	5 cut(s)	99, 399, 465, 566, 777
StyD4I	CCNGG	1 cut(s)	285
StyI	CCWWGG	1 cut(s)	321
TaaI	ACNGT	4 cut(s)	437, 680, 784, 1031
TaiI	ACGT	2 cut(s)	822, 1079
TaqI	TCGA	7 cut(s)	85, 129, 147, 479, 587, 605, 894
TaqII	GACCGA	1 cut(s)	342
TasI	AATT	6 cut(s)	29, 67, 143, 402, 475, 702
TatI	WGTACW	3 cut(s)	101, 395, 743
TauI	GCSGC	2 cut(s)	270, 986
TfiI	GAWTC	3 cut(s)	11, 232, 541
Tru1I	TTAA	5 cut(s)	272, 657, 690, 729, 1099
Tru9I	TTAA	5 cut(s)	272, 657, 690, 729, 1099
TscAI	CASTG	1 cut(s)	685
TseFI	GTSAC	1 cut(s)	820
Tsp45I	GTSAC	1 cut(s)	820
TspDTI	ATGAA	4 cut(s)	225, 533, 1013, 1095
TspGWI	ACGGA	1 cut(s)	241
TspRI	CASTG	1 cut(s)	685
VneI	GTGCAC	1 cut(s)	199
VpaK11BI	GGWCC	1 cut(s)	325
XagI	CCTNNNNNAGG	1 cut(s)	659
XapI	RAATTY	2 cut(s)	143, 475
XceI	RCATGY	3 cut(s)	335, 349, 1063
XspI	CTAG	5 cut(s)	99, 399, 465, 566, 777
ZrmI	AGTACT	3 cut(s)	103, 397, 745

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.