Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0001744

Physical Location & Seq

Genomic Coordinates Reverse (-)

24996824 .. 25003126

Gene Structure 6303 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000018063

Sequence Viewer

CDS Protein Promoter (2k)

Length: 990 bp

ATGGAACACAATCTCTCTGCAATGGCTGCTAATCCCTCCGATGAGGGAAAACCTTACATTCATGGAATTTCTGATGGAATACCTGCTAGCTGTCCAAGTGTTAAGTTACTAAAGTCAGCGTTTGATGAGGTCGACCAGCATTGCTCTCTAGATATTTTGCCAATTCTTTTTGAGGAGGCTCAGCTTCCAGCAAAGTTAAAATATCCCTTTCACAGATCACATGCCCCAGATGTATTTAACATGTCAATGCTGCCCAAGGAAGACAATAGGCCACAATGGGGTTCCCTATTGGCCTTGTTGAGCTTCCTAAAAGTTTCTAACCCATTTAAAAGTCAGATGTGCATGGATGCACAATTGACTTGTCAGAACTGCGATGAATTACAACAAAACAATGGAGATGCTCATCCCCCATTCATCATGGAGATAGCTATTGAGAAGGAATATAATCAAGCACCAGAATCTGAAGAGGAAGCTGTCGAAAGTTTGAAAAGTGGTGGAGAACTTAGGGTGTTGCAGAGACAGATGAGCCCAAAAGTAGGTGGGAAACTCATGCAACTACTATTCGACCATGGCACTTCCAAAGATAACCCAGTGACTGAGAAAACTTATGAAACACCAAACAACCGGTGGAGAAGATGCAAACGCAATGCCTCATTTGATTCAAGAAAAATCGTTCTCCTATTCTCAGTCCTATCAAGTTTGGGAACATTGGTGCTGATATATCTAACATTGAGAGTTCGGCAAAGTGCTTCCTTTGAACGCTTCATAGAAACAACAGCTGATGATGAGAGACTTGGTCACATGGCCATAGGTGGAATATACAACCATCCGATCCAAGATTCTCCCCCTACTAGCTCCAAGGTGGAGGAGACCTTGGAGGGGGATCTTGATGACAGCGAGAAGCACCTCGAGAACACGAAAGAGTCCTCCTTCCCTTCTTCAGTGTTTTTGGTGCTTCCCAAAGCTCCACGCTTGCTCCAGCGCCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

330

Amino Acids

36.96

Weight (kDa)

5.44

Isoelectric Point (pI)

56.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001744)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G39900
fragaria_vesca	FvH4_1g20820 FvH4_1g20820 FvH4_1g20820 FvH4_1g20820
malus_domestica	MD01G1030700.v1.1 MD15G1323600.v1.1
prunus_persica	Prupe.6G187400_v2.0.a1 Prupe.6G187400_v2.0.a1 Prupe.6G187400_v2.0.a1 Prupe.6G187400_v2.0.a1 Prupe.6G187400_v2.0.a1 Prupe.6G187400_v2.0.a1 Prupe.6G187400_v2.0.a1 Prupe.6G187400_v2.0.a1 Prupe.6G187400_v2.0.a1 Prupe.6G187400_v2.0.a1 Prupe.6G187400_v2.0.a1 Prupe.6G187400_v2.0.a1 Prupe.6G187400_v2.0.a1 Prupe.6G187400_v2.0.a1 Prupe.6G187400_v2.0.a1 Prupe.6G187400_v2.0.a1 Prupe.6G187400_v2.0.a1 Prupe.6G187400_v2.0.a1 Prupe.6G187400_v2.0.a1 Prupe.6G187400_v2.0.a1 Prupe.6G187400_v2.0.a1 Prupe.6G187400_v2.0.a1 Prupe.6G187400_v2.0.a1 Prupe.6G187400_v2.0.a1 Prupe.6G187400_v2.0.a1
pyrus_communis	pycom01g05830 pycom15g28550
rosa_chinensis	RchiOBHm_Chr2g0113431 RchiOBHm_Chr2g0113441
rosa_laevigata	RLG00000018063
rosa_multiflora	Rmu_sc0007415.1_g000016
rosa_roxburghii	Rroxscaffold_2G00129260 Rroxscaffold_2G00129920
rosa_rugosa	Rorug02G0187400 Rorug02G0187500 Rorug02G0187600
rosa_samantha	Rh2AG242000 Rh2BG255800 Rh2CG246100 Rh2DG249900
rosa_wichuraiana	Rw2G018880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	91
AccI	GTMKAC	1 cut(s)	132
AclWI	GGATC	2 cut(s)	826, 891
AcoI	YGGCCR	1 cut(s)	804
AcsI	RAATTY	1 cut(s)	66
AcuI	CTGAAG	2 cut(s)	483, 924
AfiI	CCNNNNNNNGG	3 cut(s)	278, 536, 879
AflIII	ACRYGT	1 cut(s)	240
AgeI	ACCGGT	1 cut(s)	624
AgsI	TTSAA	3 cut(s)	487, 663, 758
AluBI	AGCT	8 cut(s)	90, 184, 303, 428, 473, 779, 855, 965
AluI	AGCT	8 cut(s)	90, 184, 303, 428, 473, 779, 855, 965
Alw26I	GTCTC	3 cut(s)	511, 784, 863
AlwI	GGATC	2 cut(s)	826, 891
AlwNI	CAGNNNCTG	2 cut(s)	461, 596
Ama87I	CYCGRG	1 cut(s)	908
AoxI	GGCC	3 cut(s)	269, 291, 804
ApeKI	GCWGC	2 cut(s)	26, 250
ApoI	RAATTY	1 cut(s)	66
AsiGI	ACCGGT	1 cut(s)	624
AspLEI	GCGC	1 cut(s)	984
AsuNHI	GCTAGC	1 cut(s)	86
AvaI	CYCGRG	1 cut(s)	908
BalI	TGGCCA	1 cut(s)	806
BanII	GRGCYC	1 cut(s)	530
BbsI	GAAGAC	1 cut(s)	267
BbvI	GCAGC	2 cut(s)	13, 237
BccI	CCATC	2 cut(s)	68, 834
BcoDI	GTCTC	3 cut(s)	511, 784, 863
BfaI	CTAG	3 cut(s)	87, 149, 852
BfoI	RGCGCY	1 cut(s)	985
BfuAI	ACCTGC	1 cut(s)	91
BisI	GCNGC	2 cut(s)	27, 251
BlpI	GCTNAGC	1 cut(s)	180
BlsI	GCNGC	2 cut(s)	28, 252
BmeT110I	CYCGRG	1 cut(s)	908
BmiI	GGNNCC	1 cut(s)	283
BmrI	ACTGGG	1 cut(s)	584
BmsI	GCATC	3 cut(s)	337, 388, 626
BmtI	GCTAGC	1 cut(s)	90
BmuI	ACTGGG	1 cut(s)	584
BpiI	GAAGAC	1 cut(s)	267
BpmI	CTGGAG	1 cut(s)	962
Bpu1102I	GCTNAGC	1 cut(s)	180
BsaBI	GATNNNNATC	1 cut(s)	402
BsaI	GGTCTC	1 cut(s)	863
BsaJI	CCNNGG	4 cut(s)	255, 568, 858, 873
BsaWI	WCCGGW	1 cut(s)	624
BsaXI	ACNNNNNCTCC	2 cut(s)	960, 990
Bsc4I	CCNNNNNNNGG	3 cut(s)	278, 536, 879
Bse118I	RCCGGY	1 cut(s)	624
Bse1I	ACTGG	1 cut(s)	590
Bse3DI	GCAATG	3 cut(s)	27, 139, 652
Bse8I	GATNNNNATC	1 cut(s)	402
BseDI	CCNNGG	4 cut(s)	255, 568, 858, 873
BseGI	GGATG	3 cut(s)	352, 403, 826
BseJI	GATNNNNATC	1 cut(s)	402
BseLI	CCNNNNNNNGG	3 cut(s)	278, 536, 879
BseMI	GCAATG	3 cut(s)	27, 139, 652
BseMII	CTCAG	3 cut(s)	194, 588, 699
BseNI	ACTGG	1 cut(s)	590
BseRI	GAGGAG	2 cut(s)	188, 881
BseXI	GCAGC	2 cut(s)	13, 237
BshFI	GGCC	3 cut(s)	271, 293, 806
BshTI	ACCGGT	1 cut(s)	624
BsiHKCI	CYCGRG	1 cut(s)	908
BsiSI	CCGG	1 cut(s)	625
BslI	CCNNNNNNNGG	3 cut(s)	278, 536, 879
BsmAI	GTCTC	3 cut(s)	511, 784, 863
BsnI	GGCC	3 cut(s)	271, 293, 806
Bso31I	GGTCTC	1 cut(s)	863
BsoBI	CYCGRG	1 cut(s)	908
Bsp1286I	GDGCHC	1 cut(s)	530
Bsp143I	GATC	3 cut(s)	215, 831, 883
Bsp1720I	GCTNAGC	1 cut(s)	180
Bsp19I	CCATGG	1 cut(s)	568
BspANI	GGCC	3 cut(s)	271, 293, 806
BspCNI	CTCAG	3 cut(s)	193, 589, 698
BspLI	GGNNCC	1 cut(s)	283
BspMI	ACCTGC	1 cut(s)	91
BspOI	GCTAGC	1 cut(s)	90
BspPI	GGATC	2 cut(s)	826, 891
BspTNI	GGTCTC	1 cut(s)	863
BsrDI	GCAATG	3 cut(s)	27, 139, 652
BsrFI	RCCGGY	1 cut(s)	624
BsrI	ACTGG	1 cut(s)	590
BssAI	RCCGGY	1 cut(s)	624
BssECI	CCNNGG	4 cut(s)	255, 568, 858, 873
BssMI	GATC	3 cut(s)	215, 831, 883
BssT1I	CCWWGG	4 cut(s)	255, 568, 858, 873
Bst6I	CTCTTC	1 cut(s)	459
BstAPI	GCANNNNNTGC	1 cut(s)	26
BstC8I	GCNNGC	2 cut(s)	88, 974
BstDEI	CTNAG	4 cut(s)	180, 503, 597, 685
BstDSI	CCRYGG	1 cut(s)	568
BstF5I	GGATG	3 cut(s)	352, 403, 826
BstH2I	RGCGCY	1 cut(s)	985
BstHHI	GCGC	1 cut(s)	984
BstKTI	GATC	3 cut(s)	218, 834, 886
BstMAI	GTCTC	3 cut(s)	511, 784, 863
BstMBI	GATC	3 cut(s)	215, 831, 883
BstMWI	GCNNNNNNNGC	1 cut(s)	26
BstNSI	RCATGY	2 cut(s)	224, 244
BstV1I	GCAGC	2 cut(s)	13, 237
BstV2I	GAAGAC	1 cut(s)	267
BstX2I	RGATCY	1 cut(s)	883
BstYI	RGATCY	1 cut(s)	883
BsuRI	GGCC	3 cut(s)	271, 293, 806
BtgI	CCRYGG	1 cut(s)	568
BtgZI	GCGATG	1 cut(s)	387
BtsCI	GGATG	3 cut(s)	352, 403, 826
BtsIMutI	CAGTG	2 cut(s)	597, 948
BveI	ACCTGC	1 cut(s)	91
Cac8I	GCNNGC	2 cut(s)	88, 974
CaiI	CAGNNNCTG	2 cut(s)	461, 596
CfoI	GCGC	1 cut(s)	984
Cfr10I	RCCGGY	1 cut(s)	624
CspAI	ACCGGT	1 cut(s)	624
CviAII	CATG	8 cut(s)	62, 221, 241, 343, 418, 550, 569, 802
DdeI	CTNAG	4 cut(s)	180, 503, 597, 685
DpnI	GATC	3 cut(s)	217, 833, 885
DpnII	GATC	3 cut(s)	215, 831, 883
DraI	TTTAAA	1 cut(s)	328
EaeI	YGGCCR	1 cut(s)	804
Eam1104I	CTCTTC	1 cut(s)	459
EarI	CTCTTC	1 cut(s)	459
Eco130I	CCWWGG	4 cut(s)	255, 568, 858, 873
Eco24I	GRGCYC	1 cut(s)	530
Eco31I	GGTCTC	1 cut(s)	863
Eco57I	CTGAAG	2 cut(s)	483, 924
Eco88I	CYCGRG	1 cut(s)	908
EcoT14I	CCWWGG	4 cut(s)	255, 568, 858, 873
EcoT38I	GRGCYC	1 cut(s)	530
ErhI	CCWWGG	4 cut(s)	255, 568, 858, 873
FaeI	CATG	8 cut(s)	65, 224, 244, 346, 421, 553, 572, 805
FatI	CATG	8 cut(s)	61, 220, 240, 342, 417, 549, 568, 801
FblI	GTMKAC	1 cut(s)	132
Fnu4HI	GCNGC	2 cut(s)	27, 251
FokI	GGATG	3 cut(s)	359, 390, 813
FriOI	GRGCYC	1 cut(s)	530
Fsp4HI	GCNGC	2 cut(s)	27, 251
FspBI	CTAG	3 cut(s)	87, 149, 852
GlaI	GCGC	1 cut(s)	983
GluI	GCNGC	2 cut(s)	27, 251
GsuI	CTGGAG	1 cut(s)	962
HaeII	RGCGCY	1 cut(s)	985
HaeIII	GGCC	3 cut(s)	271, 293, 806
HapII	CCGG	1 cut(s)	625
HhaI	GCGC	1 cut(s)	984
Hin1II	CATG	8 cut(s)	65, 224, 244, 346, 421, 553, 572, 805
Hin6I	GCGC	1 cut(s)	982
HinP1I	GCGC	1 cut(s)	982
HincII	GTYRAC	1 cut(s)	133
HindII	GTYRAC	1 cut(s)	133
HinfI	GANTC	4 cut(s)	458, 659, 839, 923
HpaII	CCGG	1 cut(s)	625
Hpy166II	GTNNAC	1 cut(s)	133
Hpy188I	TCNGA	7 cut(s)	40, 73, 336, 366, 463, 831, 989
Hpy188III	TCNNGA	4 cut(s)	149, 663, 887, 910
Hpy8I	GTNNAC	1 cut(s)	133
HpyAV	CCTTC	3 cut(s)	430, 940, 945
HpyCH4V	TGCA	6 cut(s)	20, 342, 350, 514, 553, 639
HpyF10VI	GCNNNNNNNGC	1 cut(s)	26
HpyF3I	CTNAG	4 cut(s)	180, 503, 597, 685
Hsp92II	CATG	8 cut(s)	65, 224, 244, 346, 421, 553, 572, 805
HspAI	GCGC	1 cut(s)	982
Kzo9I	GATC	3 cut(s)	215, 831, 883
LmnI	GCTCC	3 cut(s)	860, 970, 981
LpnPI	CCDG	7 cut(s)	96, 149, 201, 240, 468, 603, 638
Lsp1109I	GCAGC	2 cut(s)	13, 237
LweI	GCATC	3 cut(s)	337, 388, 626
MaeI	CTAG	3 cut(s)	87, 149, 852
MaeIII	GTNAC	3 cut(s)	105, 592, 797
MalI	GATC	3 cut(s)	217, 833, 885
MboI	GATC	3 cut(s)	215, 831, 883
MboII	GAAGA	4 cut(s)	272, 476, 645, 930
MfeI	CAATTG	1 cut(s)	353
MflI	RGATCY	1 cut(s)	883
MhlI	GDGCHC	1 cut(s)	530
MlsI	TGGCCA	1 cut(s)	806
MluCI	AATT	4 cut(s)	66, 162, 353, 377
MluNI	TGGCCA	1 cut(s)	806
MlyI	GAGTC	1 cut(s)	932
Mox20I	TGGCCA	1 cut(s)	806
MscI	TGGCCA	1 cut(s)	806
MseI	TTAA	4 cut(s)	102, 197, 237, 327
MslI	CAYNNNNRTG	1 cut(s)	245
Msp20I	TGGCCA	1 cut(s)	806
MspA1I	CMGCKG	1 cut(s)	779
MspI	CCGG	1 cut(s)	625
MunI	CAATTG	1 cut(s)	353
MwoI	GCNNNNNNNGC	1 cut(s)	26
NcoI	CCATGG	1 cut(s)	568
NdeII	GATC	3 cut(s)	215, 831, 883
NheI	GCTAGC	1 cut(s)	86
NlaIII	CATG	8 cut(s)	65, 224, 244, 346, 421, 553, 572, 805
NlaIV	GGNNCC	1 cut(s)	283
NmuCI	GTSAC	2 cut(s)	592, 797
NspI	RCATGY	2 cut(s)	224, 244
PaeR7I	CTCGAG	1 cut(s)	908
PciI	ACATGT	1 cut(s)	240
PfeI	GAWTC	3 cut(s)	458, 659, 839
PflFI	GACNNNGTC	1 cut(s)	795
PinAI	ACCGGT	1 cut(s)	624
PkrI	GCNGC	2 cut(s)	28, 252
PleI	GAGTC	1 cut(s)	931
PpsI	GAGTC	1 cut(s)	931
PscI	ACATGT	1 cut(s)	240
PspN4I	GGNNCC	1 cut(s)	283
PstNI	CAGNNNCTG	2 cut(s)	461, 596
PsuI	RGATCY	1 cut(s)	883
PsyI	GACNNNGTC	1 cut(s)	795
PvuII	CAGCTG	1 cut(s)	779
RseI	CAYNNNNRTG	1 cut(s)	245
SalI	GTCGAC	1 cut(s)	131
SaqAI	TTAA	4 cut(s)	102, 197, 237, 327
SatI	GCNGC	2 cut(s)	27, 251
Sau3AI	GATC	3 cut(s)	215, 831, 883
SchI	GAGTC	1 cut(s)	932
SduI	GDGCHC	1 cut(s)	530
SfaNI	GCATC	3 cut(s)	337, 388, 626
Sfr274I	CTCGAG	1 cut(s)	908
SlaI	CTCGAG	1 cut(s)	908
SmiMI	CAYNNNNRTG	1 cut(s)	245
SmlI	CTYRAG	1 cut(s)	908
SmoI	CTYRAG	1 cut(s)	908
Sse9I	AATT	4 cut(s)	66, 162, 353, 377
SspMI	CTAG	3 cut(s)	87, 149, 852
StyI	CCWWGG	4 cut(s)	255, 568, 858, 873
TaqI	TCGA	4 cut(s)	132, 477, 564, 909
TasI	AATT	4 cut(s)	66, 162, 353, 377
TfiI	GAWTC	3 cut(s)	458, 659, 839
Tru1I	TTAA	4 cut(s)	102, 197, 237, 327
Tru9I	TTAA	4 cut(s)	102, 197, 237, 327
TscAI	CASTG	2 cut(s)	597, 948
TseFI	GTSAC	2 cut(s)	592, 797
TseI	GCWGC	2 cut(s)	26, 250
Tsp45I	GTSAC	2 cut(s)	592, 797
TspDTI	ATGAA	5 cut(s)	50, 390, 403, 624, 754
TspRI	CASTG	2 cut(s)	597, 948
Tth111I	GACNNNGTC	1 cut(s)	795
XapI	RAATTY	1 cut(s)	66
XbaI	TCTAGA	1 cut(s)	148
XceI	RCATGY	2 cut(s)	224, 244
XcmI	CCANNNNNNNNNTGG	1 cut(s)	624
XhoI	CTCGAG	1 cut(s)	908
XmiI	GTMKAC	1 cut(s)	132
XspI	CTAG	3 cut(s)	87, 149, 852

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.