Prupe.6G187400_v2.0.a1

isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0001744
Physical Location & Seq
Reverse (-)
19582253 .. 19589877
7625 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G187400.24

Sequence Viewer

Length: 759 bp
ATGGCTGTAAATGCCTCCGACGAGGGAAGTGTGGATCAAAGTTGCAGCATACCTGTTAGCTGTTCAAATTTTAAATTGCTAAAGCAAACTATTAATGAAGTCGACCAGCATTGCTCTCTTGATATTTTGCCTCTTCTTTTAGAGAAGGCTCCACTTCCAGCAAAGCTGAAATGTCCCTTTCACAGCTCACATTCTTCTGTTGTGCAGGCCCCAGATGTCTATAGCATTTCAATGTTGCCCGAAGAAGGCAACAGTTTACGATGTGCTTCAGTATTGGGCTATTTGAACTTTTTAAAAGTTTATAATTCATCTAAAAGTCAGATGTGCATGGATGCTCAGTCGAGTTGCCAGAACGGCATTGATTCACAAGCAAACATGGCAGATTCTCATCCCCCATGCATCATTGAGATAGATCTTGAGAAGGGATGTATTCAAGCACCAGAATCTGAAGAGGAAGCTATCGAAAGTTTGAAACGTGAGGGTTTACTCACTAGGGTGTTTCGCAGACAGGCAAGCCTAAAAGTAGGTGGGAAACTTATGCATCTTCTATTCAACCATGGCACTTCAAGAGATAACCCAGTGCCTGAGAAAGTTCATGAAACACCAAACAACCGGTGGAGAAGATGCAAACGCACTGCCTCATTTGATTCCAGAAAAGTCGTTTTCCTGTTTTCAATCTTGTCAAGTTTGGGGACATTGGTTTTGATATATCTGACATTGAGAGTTCGGCAGAGTGCCGATGGTTTCATTCATGTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

253

Amino Acids

27.93

Weight (kDa)

7.06

Isoelectric Point (pI)

58.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 303
AccI GTMKAC 1 cut(s) 102
AclWI GGATC 1 cut(s) 42
AcsI RAATTY 1 cut(s) 67
AcuI CTGAAG 2 cut(s) 252, 468
AfiI CCNNNNNNNGG 1 cut(s) 245
AgeI ACCGGT 1 cut(s) 612
AgsI TTSAA 8 cut(s) 66, 231, 286, 434, 472, 553, 567, 675
AleI CACNNNNGTG 1 cut(s) 494
AluBI AGCT 4 cut(s) 60, 166, 186, 458
AluI AGCT 4 cut(s) 60, 166, 186, 458
AlwI GGATC 1 cut(s) 42
AlwNI CAGNNNCTG 2 cut(s) 446, 584
AoxI GGCC 1 cut(s) 207
ApeKI GCWGC 1 cut(s) 45
ApoI RAATTY 1 cut(s) 67
ArsI GACNNNNNNTTYG 2 cut(s) 685, 717
AseI ATTAAT 1 cut(s) 93
AsiGI ACCGGT 1 cut(s) 612
AspS9I GGNCC 1 cut(s) 208
BbvI GCAGC 1 cut(s) 57
BccI CCATC 1 cut(s) 734
BceAI ACGGC 1 cut(s) 370
BfaI CTAG 1 cut(s) 492
BfmI CTRYAG 1 cut(s) 220
BglI GCCNNNNNGGC 1 cut(s) 354
BglII AGATCT 1 cut(s) 412
BisI GCNGC 1 cut(s) 46
BlsI GCNGC 1 cut(s) 47
BmgT120I GGNCC 1 cut(s) 208
BmiI GGNNCC 2 cut(s) 150, 210
BmrI ACTGGG 1 cut(s) 572
BmsI GCATC 4 cut(s) 322, 408, 550, 614
BmuI ACTGGG 1 cut(s) 572
BpuEI CTTGAG 1 cut(s) 437
BsaBI GATNNNNATC 1 cut(s) 387
BsaJI CCNNGG 1 cut(s) 556
BsaWI WCCGGW 1 cut(s) 612
Bsc4I CCNNNNNNNGG 1 cut(s) 245
Bse118I RCCGGY 1 cut(s) 612
Bse1I ACTGG 1 cut(s) 578
Bse3DI GCAATG 1 cut(s) 109
Bse8I GATNNNNATC 1 cut(s) 387
BseDI CCNNGG 1 cut(s) 556
BseGI GGATG 3 cut(s) 337, 388, 431
BseJI GATNNNNATC 1 cut(s) 387
BseLI CCNNNNNNNGG 1 cut(s) 245
BseMI GCAATG 1 cut(s) 109
BseMII CTCAG 2 cut(s) 350, 576
BseNI ACTGG 1 cut(s) 578
BseXI GCAGC 1 cut(s) 57
BsgI GTGCAG 1 cut(s) 224
BshFI GGCC 1 cut(s) 209
BshTI ACCGGT 1 cut(s) 612
BsiSI CCGG 1 cut(s) 613
BslFI GGGAC 2 cut(s) 159, 706
BslI CCNNNNNNNGG 1 cut(s) 245
BsmFI GGGAC 2 cut(s) 159, 706
BsnI GGCC 1 cut(s) 209
Bsp143I GATC 2 cut(s) 34, 412
Bsp19I CCATGG 1 cut(s) 556
BspANI GGCC 1 cut(s) 209
BspCNI CTCAG 2 cut(s) 349, 577
BspHI TCATGA 1 cut(s) 595
BspLI GGNNCC 2 cut(s) 150, 210
BspPI GGATC 1 cut(s) 42
BsrDI GCAATG 1 cut(s) 109
BsrFI RCCGGY 1 cut(s) 612
BsrI ACTGG 1 cut(s) 578
BssAI RCCGGY 1 cut(s) 612
BssECI CCNNGG 1 cut(s) 556
BssMI GATC 2 cut(s) 34, 412
BssT1I CCWWGG 1 cut(s) 556
Bst4CI ACNGT 1 cut(s) 254
Bst6I CTCTTC 2 cut(s) 138, 444
BstC8I GCNNGC 2 cut(s) 207, 514
BstDEI CTNAG 2 cut(s) 336, 585
BstDSI CCRYGG 1 cut(s) 556
BstF5I GGATG 3 cut(s) 337, 388, 431
BstKTI GATC 2 cut(s) 37, 415
BstMBI GATC 2 cut(s) 34, 412
BstMWI GCNNNNNNNGC 3 cut(s) 11, 354, 377
BstSFI CTRYAG 1 cut(s) 220
BstV1I GCAGC 1 cut(s) 57
BstX2I RGATCY 1 cut(s) 412
BstYI RGATCY 1 cut(s) 412
BsuRI GGCC 1 cut(s) 209
BtgI CCRYGG 1 cut(s) 556
BtsCI GGATG 3 cut(s) 337, 388, 431
BtsI GCAGTG 1 cut(s) 633
BtsIMutI CAGTG 2 cut(s) 585, 633
Cac8I GCNNGC 2 cut(s) 207, 514
CaiI CAGNNNCTG 2 cut(s) 446, 584
CciI TCATGA 1 cut(s) 595
Cfr10I RCCGGY 1 cut(s) 612
Cfr13I GGNCC 1 cut(s) 208
CspAI ACCGGT 1 cut(s) 612
CviAII CATG 6 cut(s) 328, 376, 396, 557, 596, 752
CviJI RGCY 9 cut(s) 5, 60, 149, 166, 186, 209, 279, 458, 516
CviKI_1 RGCY 9 cut(s) 5, 60, 149, 166, 186, 209, 279, 458, 516
DdeI CTNAG 2 cut(s) 336, 585
DpnI GATC 2 cut(s) 36, 414
DpnII GATC 2 cut(s) 34, 412
DraI TTTAAA 2 cut(s) 73, 294
Eam1104I CTCTTC 2 cut(s) 138, 444
EarI CTCTTC 2 cut(s) 138, 444
Eco130I CCWWGG 1 cut(s) 556
Eco57I CTGAAG 2 cut(s) 252, 468
EcoO109I RGGNCCY 1 cut(s) 208
EcoT14I CCWWGG 1 cut(s) 556
EcoT22I ATGCAT 2 cut(s) 401, 543
ErhI CCWWGG 1 cut(s) 556
FaeI CATG 6 cut(s) 331, 379, 399, 560, 599, 755
FaqI GGGAC 2 cut(s) 159, 706
FatI CATG 6 cut(s) 327, 375, 395, 556, 595, 751
FblI GTMKAC 1 cut(s) 102
Fnu4HI GCNGC 1 cut(s) 46
FokI GGATG 3 cut(s) 344, 375, 438
Fsp4HI GCNGC 1 cut(s) 46
FspBI CTAG 1 cut(s) 492
GluI GCNGC 1 cut(s) 46
HaeIII GGCC 1 cut(s) 209
HapII CCGG 1 cut(s) 613
Hin1II CATG 6 cut(s) 331, 379, 399, 560, 599, 755
HincII GTYRAC 1 cut(s) 103
HindII GTYRAC 1 cut(s) 103
HinfI GANTC 4 cut(s) 362, 383, 443, 647
HpaII CCGG 1 cut(s) 613
Hpy166II GTNNAC 3 cut(s) 103, 257, 485
Hpy188I TCNGA 4 cut(s) 19, 321, 448, 714
Hpy188III TCNNGA 5 cut(s) 119, 416, 567, 596, 651
Hpy8I GTNNAC 3 cut(s) 103, 257, 485
Hpy99I CGWCG 1 cut(s) 23
HpyAV CCTTC 3 cut(s) 139, 239, 415
HpyCH4III ACNGT 1 cut(s) 254
HpyCH4IV ACGT 1 cut(s) 475
HpyCH4V TGCA 6 cut(s) 45, 205, 327, 399, 541, 627
HpyF10VI GCNNNNNNNGC 3 cut(s) 11, 354, 377
HpyF3I CTNAG 2 cut(s) 336, 585
HpySE526I ACGT 1 cut(s) 475
Hsp92II CATG 6 cut(s) 331, 379, 399, 560, 599, 755
Kzo9I GATC 2 cut(s) 34, 412
LmnI GCTCC 1 cut(s) 154
Lsp1109I GCAGC 1 cut(s) 57
LweI GCATC 4 cut(s) 322, 408, 550, 614
MaeI CTAG 1 cut(s) 492
MaeII ACGT 1 cut(s) 475
MalI GATC 2 cut(s) 36, 414
MboI GATC 2 cut(s) 34, 412
MboII GAAGA 6 cut(s) 125, 186, 254, 461, 536, 633
MflI RGATCY 1 cut(s) 412
MluCI AATT 3 cut(s) 67, 74, 304
MmeI TCCRAC 1 cut(s) 42
MnlI CCTC 6 cut(s) 16, 25, 141, 445, 472, 649
Mph1103I ATGCAT 2 cut(s) 401, 543
MseI TTAA 3 cut(s) 72, 93, 293
MslI CAYNNNNRTG 2 cut(s) 230, 494
MspI CCGG 1 cut(s) 613
MwoI GCNNNNNNNGC 3 cut(s) 11, 354, 377
NcoI CCATGG 1 cut(s) 556
NdeII GATC 2 cut(s) 34, 412
NlaIII CATG 6 cut(s) 331, 379, 399, 560, 599, 755
NlaIV GGNNCC 2 cut(s) 150, 210
NsiI ATGCAT 2 cut(s) 401, 543
OliI CACNNNNGTG 1 cut(s) 494
PagI TCATGA 1 cut(s) 595
PfeI GAWTC 4 cut(s) 362, 383, 443, 647
PinAI ACCGGT 1 cut(s) 612
PkrI GCNGC 1 cut(s) 47
PshBI ATTAAT 1 cut(s) 93
PsiI TTATAA 1 cut(s) 303
PspN4I GGNNCC 2 cut(s) 150, 210
PspPI GGNCC 1 cut(s) 208
PstNI CAGNNNCTG 2 cut(s) 446, 584
PsuI RGATCY 1 cut(s) 412
RseI CAYNNNNRTG 2 cut(s) 230, 494
SalI GTCGAC 1 cut(s) 101
SaqAI TTAA 3 cut(s) 72, 93, 293
SatI GCNGC 1 cut(s) 46
Sau3AI GATC 2 cut(s) 34, 412
Sau96I GGNCC 1 cut(s) 208
SetI ASST 7 cut(s) 55, 62, 168, 188, 460, 478, 529
SfaNI GCATC 4 cut(s) 322, 408, 550, 614
SfcI CTRYAG 1 cut(s) 220
SmiMI CAYNNNNRTG 2 cut(s) 230, 494
SmlI CTYRAG 1 cut(s) 416
SmoI CTYRAG 1 cut(s) 416
Sse9I AATT 3 cut(s) 67, 74, 304
SspMI CTAG 1 cut(s) 492
StyI CCWWGG 1 cut(s) 556
TaaI ACNGT 1 cut(s) 254
TaiI ACGT 1 cut(s) 478
TaqI TCGA 3 cut(s) 102, 341, 462
TasI AATT 3 cut(s) 67, 74, 304
TfiI GAWTC 4 cut(s) 362, 383, 443, 647
Tru1I TTAA 3 cut(s) 72, 93, 293
Tru9I TTAA 3 cut(s) 72, 93, 293
TscAI CASTG 2 cut(s) 585, 640
TseI GCWGC 1 cut(s) 45
TspDTI ATGAA 6 cut(s) 111, 297, 584, 612, 736, 740
TspRI CASTG 2 cut(s) 585, 640
VspI ATTAAT 1 cut(s) 93
XapI RAATTY 1 cut(s) 67
XcmI CCANNNNNNNNNTGG 1 cut(s) 612
XmiI GTMKAC 1 cut(s) 102
XspI CTAG 1 cut(s) 492
Zsp2I ATGCAT 2 cut(s) 401, 543
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.