Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0001744

Physical Location & Seq

Genomic Coordinates Reverse (-)

24824082 .. 24828083

Gene Structure 4002 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G018880.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 696 bp

ATGGAACCCAATCTCTCTGCAATGGCTGCTAATCCCTGCGATGAGGGAAAACCTTACATTCATGGAATTTCTGATGGAATACCTGCTGGCTGTCCAAGTGTGAAGTTACTAAAGTCAGCGTTTGATGAGGTTGACCAGCATTGCTCTCTAGATATTTTGCCAATTCTTTTTGAGGAGGCTCAGCTTCCAGCAAAGTTAAAATATCCCTTTAACAGATCACATGCGCCAGATGTATTTAACATGTCAATGCTGCCCAAGGAAGACAATAGGCCACAATGGGGTTCCCTATTGGCCTTGTTGAGCTTCCTAAAAGTTTCTAATCCATTTAAAAGTCAGATGTGCATGGATGCACAATTGACTTGTCAGAACTGTGATGAATTACAACAAAACAATGGAGATGCTCATCCCCCGTTCATCATGGAGATAGCTATTGAGAAGGAATATAATCAAGCACCAGAATCTGAAGAGGAAGCTGTCGAAAGTTTGAAAAGTGGTGGAGAACTTAGGGTGTTGCAGAGACAGATGAGCCCAAAAGTAGGTGGGAAACTCATGCAACTACTATTCGACCATGGCACTTCAAAAGATAACCCAGTGACTGAGAAAACTTATGAAACACCAAACAACCGGTGGAGAAGATGCAAACGCAATGCCTCATTTGATTCAAGAAAAATCGTTCTCCTATTCTCAGTCCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

231

Amino Acids

25.96

Weight (kDa)

5.45

Isoelectric Point (pI)

53.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001744)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G39900
fragaria_vesca	FvH4_1g20820 FvH4_1g20820 FvH4_1g20820 FvH4_1g20820
malus_domestica	MD01G1030700.v1.1 MD15G1323600.v1.1
prunus_persica	Prupe.6G187400_v2.0.a1 Prupe.6G187400_v2.0.a1 Prupe.6G187400_v2.0.a1 Prupe.6G187400_v2.0.a1 Prupe.6G187400_v2.0.a1 Prupe.6G187400_v2.0.a1 Prupe.6G187400_v2.0.a1 Prupe.6G187400_v2.0.a1 Prupe.6G187400_v2.0.a1 Prupe.6G187400_v2.0.a1 Prupe.6G187400_v2.0.a1 Prupe.6G187400_v2.0.a1 Prupe.6G187400_v2.0.a1 Prupe.6G187400_v2.0.a1 Prupe.6G187400_v2.0.a1 Prupe.6G187400_v2.0.a1 Prupe.6G187400_v2.0.a1 Prupe.6G187400_v2.0.a1 Prupe.6G187400_v2.0.a1 Prupe.6G187400_v2.0.a1 Prupe.6G187400_v2.0.a1 Prupe.6G187400_v2.0.a1 Prupe.6G187400_v2.0.a1 Prupe.6G187400_v2.0.a1 Prupe.6G187400_v2.0.a1
pyrus_communis	pycom01g05830 pycom15g28550
rosa_chinensis	RchiOBHm_Chr2g0113431 RchiOBHm_Chr2g0113441
rosa_laevigata	RLG00000018063
rosa_multiflora	Rmu_sc0007415.1_g000016
rosa_roxburghii	Rroxscaffold_2G00129260 Rroxscaffold_2G00129920
rosa_rugosa	Rorug02G0187400 Rorug02G0187500 Rorug02G0187600
rosa_samantha	Rh2AG242000 Rh2BG255800 Rh2CG246100 Rh2DG249900
rosa_wichuraiana	Rw2G018880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	91
AcsI	RAATTY	1 cut(s)	66
AcuI	CTGAAG	1 cut(s)	483
AfiI	CCNNNNNNNGG	2 cut(s)	278, 536
AflIII	ACRYGT	1 cut(s)	240
AgeI	ACCGGT	1 cut(s)	624
AgsI	TTSAA	3 cut(s)	487, 579, 663
AluBI	AGCT	4 cut(s)	184, 303, 428, 473
AluI	AGCT	4 cut(s)	184, 303, 428, 473
Alw26I	GTCTC	1 cut(s)	511
AlwNI	CAGNNNCTG	2 cut(s)	461, 596
AoxI	GGCC	2 cut(s)	269, 291
ApeKI	GCWGC	2 cut(s)	26, 250
ApoI	RAATTY	1 cut(s)	66
AsiGI	ACCGGT	1 cut(s)	624
AspLEI	GCGC	1 cut(s)	226
BanII	GRGCYC	1 cut(s)	530
BbsI	GAAGAC	1 cut(s)	267
BbvI	GCAGC	2 cut(s)	13, 237
BccI	CCATC	1 cut(s)	68
BcoDI	GTCTC	1 cut(s)	511
BfaI	CTAG	1 cut(s)	149
BfuAI	ACCTGC	1 cut(s)	91
BisI	GCNGC	2 cut(s)	27, 251
BlpI	GCTNAGC	1 cut(s)	180
BlsI	GCNGC	2 cut(s)	28, 252
BmiI	GGNNCC	2 cut(s)	6, 283
BmrI	ACTGGG	1 cut(s)	584
BmsI	GCATC	3 cut(s)	337, 388, 626
BmuI	ACTGGG	1 cut(s)	584
BpiI	GAAGAC	1 cut(s)	267
Bpu1102I	GCTNAGC	1 cut(s)	180
BsaBI	GATNNNNATC	1 cut(s)	402
BsaJI	CCNNGG	2 cut(s)	255, 568
BsaWI	WCCGGW	1 cut(s)	624
Bsc4I	CCNNNNNNNGG	2 cut(s)	278, 536
Bse118I	RCCGGY	1 cut(s)	624
Bse1I	ACTGG	1 cut(s)	590
Bse3DI	GCAATG	3 cut(s)	27, 139, 652
Bse8I	GATNNNNATC	1 cut(s)	402
BseDI	CCNNGG	2 cut(s)	255, 568
BseGI	GGATG	2 cut(s)	352, 403
BseJI	GATNNNNATC	1 cut(s)	402
BseLI	CCNNNNNNNGG	2 cut(s)	278, 536
BseMI	GCAATG	3 cut(s)	27, 139, 652
BseMII	CTCAG	2 cut(s)	194, 588
BseNI	ACTGG	1 cut(s)	590
BseRI	GAGGAG	1 cut(s)	188
BseXI	GCAGC	2 cut(s)	13, 237
BshFI	GGCC	2 cut(s)	271, 293
BshTI	ACCGGT	1 cut(s)	624
BsiSI	CCGG	1 cut(s)	625
BslI	CCNNNNNNNGG	2 cut(s)	278, 536
BsmAI	GTCTC	1 cut(s)	511
BsnI	GGCC	2 cut(s)	271, 293
Bsp1286I	GDGCHC	1 cut(s)	530
Bsp143I	GATC	1 cut(s)	215
Bsp1720I	GCTNAGC	1 cut(s)	180
Bsp19I	CCATGG	1 cut(s)	568
BspANI	GGCC	2 cut(s)	271, 293
BspCNI	CTCAG	2 cut(s)	193, 589
BspLI	GGNNCC	2 cut(s)	6, 283
BspMI	ACCTGC	1 cut(s)	91
BsrDI	GCAATG	3 cut(s)	27, 139, 652
BsrFI	RCCGGY	1 cut(s)	624
BsrI	ACTGG	1 cut(s)	590
BssAI	RCCGGY	1 cut(s)	624
BssECI	CCNNGG	2 cut(s)	255, 568
BssMI	GATC	1 cut(s)	215
BssT1I	CCWWGG	2 cut(s)	255, 568
Bst4CI	ACNGT	1 cut(s)	371
Bst6I	CTCTTC	1 cut(s)	459
BstAPI	GCANNNNNTGC	1 cut(s)	26
BstC8I	GCNNGC	1 cut(s)	88
BstDEI	CTNAG	4 cut(s)	180, 503, 597, 685
BstDSI	CCRYGG	1 cut(s)	568
BstF5I	GGATG	2 cut(s)	352, 403
BstHHI	GCGC	1 cut(s)	226
BstKTI	GATC	1 cut(s)	218
BstMAI	GTCTC	1 cut(s)	511
BstMBI	GATC	1 cut(s)	215
BstMWI	GCNNNNNNNGC	1 cut(s)	26
BstNSI	RCATGY	2 cut(s)	224, 244
BstV1I	GCAGC	2 cut(s)	13, 237
BstV2I	GAAGAC	1 cut(s)	267
BsuRI	GGCC	2 cut(s)	271, 293
BtgI	CCRYGG	1 cut(s)	568
BtgZI	GCGATG	1 cut(s)	54
BtsCI	GGATG	2 cut(s)	352, 403
BtsIMutI	CAGTG	1 cut(s)	597
BveI	ACCTGC	1 cut(s)	91
Cac8I	GCNNGC	1 cut(s)	88
CaiI	CAGNNNCTG	2 cut(s)	461, 596
CfoI	GCGC	1 cut(s)	226
Cfr10I	RCCGGY	1 cut(s)	624
CspAI	ACCGGT	1 cut(s)	624
CviAII	CATG	7 cut(s)	62, 221, 241, 343, 418, 550, 569
DdeI	CTNAG	4 cut(s)	180, 503, 597, 685
DpnI	GATC	1 cut(s)	217
DpnII	GATC	1 cut(s)	215
DraI	TTTAAA	1 cut(s)	328
Eam1104I	CTCTTC	1 cut(s)	459
EarI	CTCTTC	1 cut(s)	459
Eco130I	CCWWGG	2 cut(s)	255, 568
Eco24I	GRGCYC	1 cut(s)	530
Eco57I	CTGAAG	1 cut(s)	483
EcoT14I	CCWWGG	2 cut(s)	255, 568
EcoT38I	GRGCYC	1 cut(s)	530
ErhI	CCWWGG	2 cut(s)	255, 568
FaeI	CATG	7 cut(s)	65, 224, 244, 346, 421, 553, 572
FaiI	YATR	9 cut(s)	63, 222, 242, 344, 419, 444, 551, 570, 609
FatI	CATG	7 cut(s)	61, 220, 240, 342, 417, 549, 568
Fnu4HI	GCNGC	2 cut(s)	27, 251
FokI	GGATG	2 cut(s)	359, 390
FriOI	GRGCYC	1 cut(s)	530
Fsp4HI	GCNGC	2 cut(s)	27, 251
FspBI	CTAG	1 cut(s)	149
GlaI	GCGC	1 cut(s)	225
GluI	GCNGC	2 cut(s)	27, 251
HaeIII	GGCC	2 cut(s)	271, 293
HapII	CCGG	1 cut(s)	625
HhaI	GCGC	1 cut(s)	226
Hin1II	CATG	7 cut(s)	65, 224, 244, 346, 421, 553, 572
Hin6I	GCGC	1 cut(s)	224
HinP1I	GCGC	1 cut(s)	224
HincII	GTYRAC	1 cut(s)	133
HindII	GTYRAC	1 cut(s)	133
HinfI	GANTC	2 cut(s)	458, 659
HpaII	CCGG	1 cut(s)	625
Hpy166II	GTNNAC	1 cut(s)	133
Hpy188I	TCNGA	4 cut(s)	73, 336, 366, 463
Hpy188III	TCNNGA	2 cut(s)	149, 663
Hpy8I	GTNNAC	1 cut(s)	133
HpyAV	CCTTC	1 cut(s)	430
HpyCH4III	ACNGT	1 cut(s)	371
HpyCH4V	TGCA	6 cut(s)	20, 342, 350, 514, 553, 639
HpyF10VI	GCNNNNNNNGC	1 cut(s)	26
HpyF3I	CTNAG	4 cut(s)	180, 503, 597, 685
Hsp92II	CATG	7 cut(s)	65, 224, 244, 346, 421, 553, 572
HspAI	GCGC	1 cut(s)	224
Kzo9I	GATC	1 cut(s)	215
LpnPI	CCDG	9 cut(s)	49, 72, 96, 149, 201, 240, 468, 603, 638
Lsp1109I	GCAGC	2 cut(s)	13, 237
LweI	GCATC	3 cut(s)	337, 388, 626
MaeI	CTAG	1 cut(s)	149
MaeIII	GTNAC	2 cut(s)	105, 592
MalI	GATC	1 cut(s)	217
MboI	GATC	1 cut(s)	215
MboII	GAAGA	3 cut(s)	272, 476, 645
MfeI	CAATTG	1 cut(s)	353
MhlI	GDGCHC	1 cut(s)	530
MluCI	AATT	4 cut(s)	66, 162, 353, 377
MnlI	CCTC	6 cut(s)	37, 121, 166, 169, 460, 661
MseI	TTAA	4 cut(s)	197, 210, 237, 327
MslI	CAYNNNNRTG	1 cut(s)	245
MspI	CCGG	1 cut(s)	625
MunI	CAATTG	1 cut(s)	353
MwoI	GCNNNNNNNGC	1 cut(s)	26
NcoI	CCATGG	1 cut(s)	568
NdeII	GATC	1 cut(s)	215
NlaIII	CATG	7 cut(s)	65, 224, 244, 346, 421, 553, 572
NlaIV	GGNNCC	2 cut(s)	6, 283
NmuCI	GTSAC	1 cut(s)	592
NspI	RCATGY	2 cut(s)	224, 244
PciI	ACATGT	1 cut(s)	240
PfeI	GAWTC	2 cut(s)	458, 659
PinAI	ACCGGT	1 cut(s)	624
PkrI	GCNGC	2 cut(s)	28, 252
PscI	ACATGT	1 cut(s)	240
PspN4I	GGNNCC	2 cut(s)	6, 283
PstNI	CAGNNNCTG	2 cut(s)	461, 596
RseI	CAYNNNNRTG	1 cut(s)	245
SaqAI	TTAA	4 cut(s)	197, 210, 237, 327
SatI	GCNGC	2 cut(s)	27, 251
Sau3AI	GATC	1 cut(s)	215
SduI	GDGCHC	1 cut(s)	530
SetI	ASST	8 cut(s)	55, 85, 132, 186, 305, 430, 475, 541
SfaNI	GCATC	3 cut(s)	337, 388, 626
SmiMI	CAYNNNNRTG	1 cut(s)	245
Sse9I	AATT	4 cut(s)	66, 162, 353, 377
SspMI	CTAG	1 cut(s)	149
StyI	CCWWGG	2 cut(s)	255, 568
TaaI	ACNGT	1 cut(s)	371
TaqI	TCGA	2 cut(s)	477, 564
TasI	AATT	4 cut(s)	66, 162, 353, 377
TfiI	GAWTC	2 cut(s)	458, 659
Tru1I	TTAA	4 cut(s)	197, 210, 237, 327
Tru9I	TTAA	4 cut(s)	197, 210, 237, 327
TscAI	CASTG	1 cut(s)	597
TseFI	GTSAC	1 cut(s)	592
TseI	GCWGC	2 cut(s)	26, 250
Tsp45I	GTSAC	1 cut(s)	592
TspDTI	ATGAA	4 cut(s)	50, 390, 403, 624
TspRI	CASTG	1 cut(s)	597
XapI	RAATTY	1 cut(s)	66
XbaI	TCTAGA	1 cut(s)	148
XceI	RCATGY	2 cut(s)	224, 244
XcmI	CCANNNNNNNNNTGG	1 cut(s)	624
XspI	CTAG	1 cut(s)	149

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.