Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001010

Physical Location & Seq

Genomic Coordinates Reverse (-)

18557149 .. 18558945

Gene Structure 1797 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G40040.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

ATGGCTCGTACTAAGCAAACAGCTCGTAAGTCTACTGGAGGAAAGGCTCCTAGGAAGCAGCTTGCTACAAAGGCTGCACGTAAGTCTGCACCAACCACTGGAGGAGTCAAGAAGCCCCATCGTTACCGTCCAGGAACTGTTGCACTACGTGAAATTCGTAAGTACCAGAAGAGTACCGAGTTGCTGATCAGGAAGCTCCCTTTCCAGAGGCTAGTTCGTGAGATTGCCCAGGATTTCAAGACTGACTTGCGTTTCCAGAGCCATGCTGTGCTTGCACTCCAGGAGGCTGCTGAAGCATACCTTGTGGGTCTCTTTGAGGACACTAACCTCTGCGCCATCCATGCCAAGCGTGTGACCATAATGCCCAAAGACATTCAGCTCGCTCGCAGGATCAGAGGAGAACGTGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000785 GO:0000786 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006323 GO:0006325 GO:0006333 GO:0006334 GO:0006996 GO:0008150 GO:0009987 GO:0016043 GO:0022607 GO:0031490 GO:0031491 GO:0031492 GO:0031497 GO:0032991 GO:0032993 GO:0034622 GO:0034728 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0044815 GO:0044877 GO:0051276 GO:0065003 GO:0065004 GO:0071103 GO:0071824 GO:0071840 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko05034 ko05202 ko05322 map05034 map05202 map05322

Pfam Domains

Protein Families

Histone

Protein Analysis

136

Amino Acids

15.41

Weight (kDa)

11.15

Isoelectric Point (pI)

38.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Histone	PF00125	44 - 131	1e-38	Core histone H2A/H2B/H3/H4 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0001010)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G40030 AT4G40030 AT4G40030 AT4G40040 AT4G40040 AT4G40040 AT5G10980
fragaria_vesca	FvH4_1g20270 FvH4_1g28601 FvH4_1g29790 FvH4_5g36680
malus_domestica	MD01G1035300.v1.1 MD15G1320600.v1.1 MD15G1373700.v1.1
prunus_persica	Prupe.1G369600_v2.0.a1 Prupe.1G522300_v2.0.a1 Prupe.1G522300_v2.0.a1 Prupe.6G192700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0112411 RchiOBHm_Chr3g0495821 RchiOBHm_Chr6g0302291 RchiOBHm_Chr6g0302361 RchiOBHm_Chr7g0242651
rosa_laevigata	RLG00000011180 RLG00000017978 RLG00000022586 RLG00000022760 RLG00000022761
rosa_multiflora	Rmu_sc0003633.1_g000017 Rmu_ssc0000254.1_g000002
rosa_roxburghii	Rroxscaffold_2G00131460 Rroxscaffold_3G00222610 Rroxscaffold_6G00392220
rosa_rugosa	Rorug03G0254300 Rorug03G0276700 Rorug06G0313800 Rorug07G0315900 Rorug07G0316000
rosa_samantha	Rh2AG233800 Rh2BG247000 Rh2CG238100 Rh2DG241300 Rh3AG304900 Rh3AG324000 Rh3BG340700 Rh3BG340800 Rh3BG360000 Rh3DG339900 Rh3DG359400 Rh6AG426500 Rh6BG476000 Rh6BG476100 Rh6DG425900 Rh6DG426000 Rh7AG471000 Rh7BG441300
rosa_wichuraiana	Rw0G005470 Rw2G018090 Rw3G026860 Rw3G028330 Rw7G039260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	98
AccI	GTMKAC	1 cut(s)	32
AclWI	GGATC	1 cut(s)	398
AcsI	RAATTY	1 cut(s)	153
AcuI	CTGAAG	1 cut(s)	312
AdeI	CACNNNGTG	1 cut(s)	149
AfaI	GTAC	3 cut(s)	10, 164, 175
AfiI	CCNNNNNNNGG	1 cut(s)	98
AgsI	TTSAA	1 cut(s)	238
AjnI	CCWGG	3 cut(s)	130, 228, 279
AluBI	AGCT	4 cut(s)	23, 61, 196, 379
AluI	AGCT	4 cut(s)	23, 61, 196, 379
Alw26I	GTCTC	1 cut(s)	314
AlwI	GGATC	1 cut(s)	398
AlwNI	CAGNNNCTG	1 cut(s)	137
ApeKI	GCWGC	3 cut(s)	58, 74, 287
ApoI	RAATTY	1 cut(s)	153
AspA2I	CCTAGG	1 cut(s)	50
AspLEI	GCGC	1 cut(s)	335
AvrII	CCTAGG	1 cut(s)	50
BbvI	GCAGC	3 cut(s)	61, 70, 274
BccI	CCATC	2 cut(s)	126, 344
BcgI	CGANNNNNNTGC	2 cut(s)	5, 39
BciT130I	CCWGG	3 cut(s)	132, 230, 281
BclI	TGATCA	1 cut(s)	186
BcoDI	GTCTC	1 cut(s)	314
BfaI	CTAG	2 cut(s)	51, 212
BisI	GCNGC	3 cut(s)	59, 75, 288
BlnI	CCTAGG	1 cut(s)	50
BlsI	GCNGC	3 cut(s)	60, 76, 289
Bme1390I	CCNGG	3 cut(s)	132, 230, 281
BmiI	GGNNCC	1 cut(s)	48
BmrFI	CCNGG	3 cut(s)	132, 230, 281
BpmI	CTGGAG	3 cut(s)	57, 120, 263
BsaAI	YACGTR	2 cut(s)	80, 149
BsaI	GGTCTC	1 cut(s)	314
BsaJI	CCNNGG	2 cut(s)	50, 228
Bsc4I	CCNNNNNNNGG	1 cut(s)	98
Bse1I	ACTGG	2 cut(s)	40, 103
BseBI	CCWGG	3 cut(s)	132, 230, 281
BseDI	CCNNGG	2 cut(s)	50, 228
BseGI	GGATG	1 cut(s)	336
BseLI	CCNNNNNNNGG	1 cut(s)	98
BseNI	ACTGG	2 cut(s)	40, 103
BseRI	GAGGAG	2 cut(s)	117, 411
BseXI	GCAGC	3 cut(s)	61, 70, 274
BsgI	GTGCAG	2 cut(s)	60, 72
BslI	CCNNNNNNNGG	1 cut(s)	98
BsmAI	GTCTC	1 cut(s)	314
Bso31I	GGTCTC	1 cut(s)	314
Bsp143I	GATC	2 cut(s)	186, 390
BspLI	GGNNCC	1 cut(s)	48
BspPI	GGATC	1 cut(s)	398
BspTNI	GGTCTC	1 cut(s)	314
BsrI	ACTGG	2 cut(s)	40, 103
BssECI	CCNNGG	2 cut(s)	50, 228
BssMI	GATC	2 cut(s)	186, 390
BssT1I	CCWWGG	1 cut(s)	50
Bst2UI	CCWGG	3 cut(s)	132, 230, 281
Bst4CI	ACNGT	2 cut(s)	128, 139
Bst6I	CTCTTC	1 cut(s)	164
BstBAI	YACGTR	2 cut(s)	80, 149
BstC8I	GCNNGC	4 cut(s)	63, 273, 381, 385
BstDEI	CTNAG	1 cut(s)	12
BstF5I	GGATG	1 cut(s)	336
BstHHI	GCGC	1 cut(s)	335
BstKTI	GATC	2 cut(s)	189, 393
BstMAI	GTCTC	1 cut(s)	314
BstMBI	GATC	2 cut(s)	186, 390
BstMWI	GCNNNNNNNGC	4 cut(s)	71, 272, 293, 341
BstNI	CCWGG	3 cut(s)	132, 230, 281
BstSCI	CCNGG	3 cut(s)	130, 228, 279
BstV1I	GCAGC	3 cut(s)	61, 70, 274
BtsCI	GGATG	1 cut(s)	336
BtsIMutI	CAGTG	1 cut(s)	96
Cac8I	GCNNGC	4 cut(s)	63, 273, 381, 385
CaiI	CAGNNNCTG	1 cut(s)	137
CfoI	GCGC	1 cut(s)	335
Csp6I	GTAC	3 cut(s)	9, 163, 174
CviAII	CATG	2 cut(s)	263, 341
CviQI	GTAC	3 cut(s)	9, 163, 174
DdeI	CTNAG	1 cut(s)	12
DpnI	GATC	2 cut(s)	188, 392
DpnII	GATC	2 cut(s)	186, 390
DraIII	CACNNNGTG	1 cut(s)	149
Eam1104I	CTCTTC	1 cut(s)	164
EarI	CTCTTC	1 cut(s)	164
Eco130I	CCWWGG	1 cut(s)	50
Eco31I	GGTCTC	1 cut(s)	314
Eco57I	CTGAAG	1 cut(s)	312
EcoRII	CCWGG	3 cut(s)	130, 228, 279
EcoT14I	CCWWGG	1 cut(s)	50
ErhI	CCWWGG	1 cut(s)	50
FaeI	CATG	2 cut(s)	266, 344
FaiI	YATR	4 cut(s)	264, 298, 342, 359
FalI	AAGNNNNNCTT	4 cut(s)	230, 262, 285, 317
FatI	CATG	2 cut(s)	262, 340
FbaI	TGATCA	1 cut(s)	186
FblI	GTMKAC	1 cut(s)	32
Fnu4HI	GCNGC	3 cut(s)	59, 75, 288
FokI	GGATG	1 cut(s)	323
Fsp4HI	GCNGC	3 cut(s)	59, 75, 288
FspBI	CTAG	2 cut(s)	51, 212
GlaI	GCGC	1 cut(s)	334
GluI	GCNGC	3 cut(s)	59, 75, 288
GsuI	CTGGAG	3 cut(s)	57, 120, 263
HhaI	GCGC	1 cut(s)	335
Hin1II	CATG	2 cut(s)	266, 344
Hin6I	GCGC	1 cut(s)	333
HinP1I	GCGC	1 cut(s)	333
HinfI	GANTC	1 cut(s)	105
Hpy166II	GTNNAC	1 cut(s)	33
Hpy188I	TCNGA	1 cut(s)	395
Hpy188III	TCNNGA	6 cut(s)	109, 190, 205, 218, 238, 256
Hpy8I	GTNNAC	1 cut(s)	33
HpyCH4III	ACNGT	2 cut(s)	128, 139
HpyCH4IV	ACGT	3 cut(s)	79, 148, 403
HpyCH4V	TGCA	4 cut(s)	77, 89, 143, 275
HpyF10VI	GCNNNNNNNGC	4 cut(s)	71, 272, 293, 341
HpyF3I	CTNAG	1 cut(s)	12
HpySE526I	ACGT	3 cut(s)	79, 148, 403
Hsp92II	CATG	2 cut(s)	266, 344
HspAI	GCGC	1 cut(s)	333
Ksp22I	TGATCA	1 cut(s)	186
Kzo9I	GATC	2 cut(s)	186, 390
LmnI	GCTCC	2 cut(s)	52, 201
Lsp1109I	GCAGC	3 cut(s)	61, 70, 274
MaeI	CTAG	2 cut(s)	51, 212
MaeII	ACGT	3 cut(s)	79, 148, 403
MaeIII	GTNAC	2 cut(s)	122, 352
MalI	GATC	2 cut(s)	188, 392
MboI	GATC	2 cut(s)	186, 390
MboII	GAAGA	1 cut(s)	181
MluCI	AATT	1 cut(s)	153
MlyI	GAGTC	1 cut(s)	114
MnlI	CCTC	7 cut(s)	32, 95, 201, 277, 310, 338, 389
MseI	TTAA	1 cut(s)	409
MspR9I	CCNGG	3 cut(s)	132, 230, 281
MvaI	CCWGG	3 cut(s)	132, 230, 281
MwoI	GCNNNNNNNGC	4 cut(s)	71, 272, 293, 341
NdeII	GATC	2 cut(s)	186, 390
NlaIII	CATG	2 cut(s)	266, 344
NlaIV	GGNNCC	1 cut(s)	48
NmuCI	GTSAC	1 cut(s)	352
PcsI	WCGNNNNNNNCGW	1 cut(s)	154
PflMI	CCANNNNNTGG	1 cut(s)	98
PfoI	TCCNGGA	2 cut(s)	130, 279
PkrI	GCNGC	3 cut(s)	60, 76, 289
PleI	GAGTC	1 cut(s)	113
PpsI	GAGTC	1 cut(s)	113
Ppu21I	YACGTR	2 cut(s)	80, 149
Psp6I	CCWGG	3 cut(s)	130, 228, 279
PspGI	CCWGG	3 cut(s)	130, 228, 279
PspN4I	GGNNCC	1 cut(s)	48
PstNI	CAGNNNCTG	1 cut(s)	137
RsaI	GTAC	3 cut(s)	10, 164, 175
RsaNI	GTAC	3 cut(s)	9, 163, 174
SaqAI	TTAA	1 cut(s)	409
SatI	GCNGC	3 cut(s)	59, 75, 288
Sau3AI	GATC	2 cut(s)	186, 390
SchI	GAGTC	1 cut(s)	114
ScrFI	CCNGG	3 cut(s)	132, 230, 281
SetI	ASST	9 cut(s)	25, 63, 82, 151, 198, 303, 330, 381, 406
Sse9I	AATT	1 cut(s)	153
SspMI	CTAG	2 cut(s)	51, 212
StyD4I	CCNGG	3 cut(s)	130, 228, 279
StyI	CCWWGG	1 cut(s)	50
TaaI	ACNGT	2 cut(s)	128, 139
TaiI	ACGT	3 cut(s)	82, 151, 406
TasI	AATT	1 cut(s)	153
Tru1I	TTAA	1 cut(s)	409
Tru9I	TTAA	1 cut(s)	409
TscAI	CASTG	1 cut(s)	103
TseFI	GTSAC	1 cut(s)	352
TseI	GCWGC	3 cut(s)	58, 74, 287
Tsp45I	GTSAC	1 cut(s)	352
TspRI	CASTG	1 cut(s)	103
Van91I	CCANNNNNTGG	1 cut(s)	98
XapI	RAATTY	1 cut(s)	153
XmaJI	CCTAGG	1 cut(s)	50
XmiI	GTMKAC	1 cut(s)	32
XspI	CTAG	2 cut(s)	51, 212

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.