Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0001010

Physical Location & Seq

Genomic Coordinates Forward (+)

50935204 .. 50943935

Gene Structure 8732 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG441300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

ATGGCCCGTACCAAGCAGACTGCTCGTAAGTCCACCGGAGGCAAGGCTCCAAGGAAGCAATTGGCTACCAAGGCTGCTCGTAAGTCGGCCCCGACTACCGGAGGTGTGAAGAAGCCCCACAGATACCGCCCCGGAACTGTTGCCCTTCGTGAAATCCGCAAGTACCAGAAGAGCACGGAGCTACTGATCAGGAAGCTCCCGTTCCAGAGGCTGGTTCGTGAGATTGCGCAGGACTTCAAGACTGACCTGCGTTTCCAGAGCCATGCTGTTTTGGCACTGCAGGAGGCGGCTGAGGCCTACCTTGTTGGGTTGTTTGAGGACACAAATCTCTGTGCCATTCATGCCAAGCGCGTCACTATTATGCCCAAGGATATCCAGCTCGCCAGGAGAATCAGGGGCGAGAGGGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000785 GO:0000786 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006323 GO:0006325 GO:0006333 GO:0006334 GO:0006996 GO:0008150 GO:0009987 GO:0016043 GO:0022607 GO:0031490 GO:0031491 GO:0031492 GO:0031497 GO:0032991 GO:0032993 GO:0034622 GO:0034728 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0044815 GO:0044877 GO:0051276 GO:0065003 GO:0065004 GO:0071103 GO:0071824 GO:0071840 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko05034 ko05202 ko05322 map05034 map05202 map05322

Pfam Domains

Protein Families

Histone

Protein Analysis

136

Amino Acids

15.41

Weight (kDa)

11.15

Isoelectric Point (pI)

38.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Histone	PF00125	44 - 131	1e-38	Core histone H2A/H2B/H3/H4 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001010)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G40030 AT4G40030 AT4G40030 AT4G40040 AT4G40040 AT4G40040 AT5G10980
fragaria_vesca	FvH4_1g20270 FvH4_1g28601 FvH4_1g29790 FvH4_5g36680
malus_domestica	MD01G1035300.v1.1 MD15G1320600.v1.1 MD15G1373700.v1.1
prunus_persica	Prupe.1G369600_v2.0.a1 Prupe.1G522300_v2.0.a1 Prupe.1G522300_v2.0.a1 Prupe.6G192700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0112411 RchiOBHm_Chr3g0495821 RchiOBHm_Chr6g0302291 RchiOBHm_Chr6g0302361 RchiOBHm_Chr7g0242651
rosa_laevigata	RLG00000011180 RLG00000017978 RLG00000022586 RLG00000022760 RLG00000022761
rosa_multiflora	Rmu_sc0003633.1_g000017 Rmu_ssc0000254.1_g000002
rosa_roxburghii	Rroxscaffold_2G00131460 Rroxscaffold_3G00222610 Rroxscaffold_6G00392220
rosa_rugosa	Rorug03G0254300 Rorug03G0276700 Rorug06G0313800 Rorug07G0315900 Rorug07G0316000
rosa_samantha	Rh2AG233800 Rh2BG247000 Rh2CG238100 Rh2DG241300 Rh3AG304900 Rh3AG324000 Rh3BG340700 Rh3BG340800 Rh3BG360000 Rh3DG339900 Rh3DG359400 Rh6AG426500 Rh6BG476000 Rh6BG476100 Rh6DG425900 Rh6DG426000 Rh7AG471000 Rh7BG441300
rosa_wichuraiana	Rw0G005470 Rw2G018090 Rw3G026860 Rw3G028330 Rw7G039260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	228
Acc36I	ACCTGC	1 cut(s)	255
AccB7I	CCANNNNNTGG	1 cut(s)	211
AccII	CGCG	1 cut(s)	351
AciI	CCGC	3 cut(s)	127, 157, 287
AfaI	GTAC	2 cut(s)	10, 164
AfiI	CCNNNNNNNGG	2 cut(s)	98, 211
AgsI	TTSAA	1 cut(s)	238
AjnI	CCWGG	1 cut(s)	383
AluBI	AGCT	3 cut(s)	181, 196, 379
AluI	AGCT	3 cut(s)	181, 196, 379
Alw21I	GWGCWC	1 cut(s)	176
AlwNI	CAGNNNCTG	1 cut(s)	211
AoxI	GGCC	3 cut(s)	3, 87, 294
ApeKI	GCWGC	1 cut(s)	74
AspLEI	GCGC	2 cut(s)	229, 351
AspS9I	GGNCC	2 cut(s)	4, 88
AsuC2I	CCSGG	1 cut(s)	132
Bbv12I	GWGCWC	1 cut(s)	176
BbvCI	CCTCAGC	1 cut(s)	291
BbvI	GCAGC	1 cut(s)	61
BcgI	CGANNNNNNTGC	2 cut(s)	5, 39
BciT130I	CCWGG	1 cut(s)	385
BclI	TGATCA	1 cut(s)	186
BcnI	CCSGG	1 cut(s)	132
BfmI	CTRYAG	1 cut(s)	278
BfuAI	ACCTGC	1 cut(s)	255
BisI	GCNGC	2 cut(s)	75, 288
BlsI	GCNGC	2 cut(s)	76, 289
Bme1390I	CCNGG	2 cut(s)	132, 385
BmgT120I	GGNCC	2 cut(s)	4, 88
BmiI	GGNNCC	2 cut(s)	48, 90
BmrFI	CCNGG	2 cut(s)	132, 385
Bpu10I	CCTNAGC	1 cut(s)	291
BpuMI	CCSGG	1 cut(s)	132
BsaJI	CCNNGG	4 cut(s)	50, 69, 130, 366
BsaWI	WCCGGW	2 cut(s)	35, 98
Bsc4I	CCNNNNNNNGG	2 cut(s)	98, 211
BseBI	CCWGG	1 cut(s)	385
BseDI	CCNNGG	4 cut(s)	50, 69, 130, 366
BseLI	CCNNNNNNNGG	2 cut(s)	98, 211
BseMII	CTCAG	1 cut(s)	282
BseXI	GCAGC	1 cut(s)	61
Bsh1236I	CGCG	1 cut(s)	351
BshFI	GGCC	3 cut(s)	5, 89, 296
BsiHKAI	GWGCWC	1 cut(s)	176
BsiSI	CCGG	3 cut(s)	36, 99, 132
BslI	CCNNNNNNNGG	2 cut(s)	98, 211
BsnI	GGCC	3 cut(s)	5, 89, 296
Bsp1286I	GDGCHC	1 cut(s)	176
Bsp143I	GATC	1 cut(s)	186
BspACI	CCGC	3 cut(s)	127, 157, 287
BspANI	GGCC	3 cut(s)	5, 89, 296
BspCNI	CTCAG	1 cut(s)	283
BspFNI	CGCG	1 cut(s)	351
BspLI	GGNNCC	2 cut(s)	48, 90
BspMAI	CTGCAG	1 cut(s)	282
BspMI	ACCTGC	1 cut(s)	255
BspQI	GCTCTTC	1 cut(s)	164
BssECI	CCNNGG	4 cut(s)	50, 69, 130, 366
BssMI	GATC	1 cut(s)	186
BssT1I	CCWWGG	3 cut(s)	50, 69, 366
Bst2UI	CCWGG	1 cut(s)	385
Bst4CI	ACNGT	1 cut(s)	139
Bst6I	CTCTTC	1 cut(s)	164
BstC8I	GCNNGC	1 cut(s)	381
BstDEI	CTNAG	1 cut(s)	291
BstFNI	CGCG	1 cut(s)	351
BstHHI	GCGC	2 cut(s)	229, 351
BstKTI	GATC	1 cut(s)	189
BstMBI	GATC	1 cut(s)	186
BstMWI	GCNNNNNNNGC	4 cut(s)	71, 272, 293, 341
BstNI	CCWGG	1 cut(s)	385
BstSCI	CCNGG	2 cut(s)	130, 383
BstSFI	CTRYAG	1 cut(s)	278
BstUI	CGCG	1 cut(s)	351
BstV1I	GCAGC	1 cut(s)	61
BsuRI	GGCC	3 cut(s)	5, 89, 296
BtsI	GCAGTG	1 cut(s)	275
BtsIMutI	CAGTG	1 cut(s)	275
BveI	ACCTGC	1 cut(s)	255
Cac8I	GCNNGC	1 cut(s)	381
CaiI	CAGNNNCTG	1 cut(s)	211
CfoI	GCGC	2 cut(s)	229, 351
Cfr13I	GGNCC	2 cut(s)	4, 88
CseI	GACGC	1 cut(s)	340
Csp6I	GTAC	2 cut(s)	9, 163
CviAII	CATG	2 cut(s)	263, 341
CviQI	GTAC	2 cut(s)	9, 163
DdeI	CTNAG	1 cut(s)	291
DpnI	GATC	1 cut(s)	188
DpnII	GATC	1 cut(s)	186
Eam1104I	CTCTTC	1 cut(s)	164
EarI	CTCTTC	1 cut(s)	164
Eco130I	CCWWGG	3 cut(s)	50, 69, 366
Eco147I	AGGCCT	1 cut(s)	296
Eco32I	GATATC	1 cut(s)	373
EcoRII	CCWGG	1 cut(s)	383
EcoRV	GATATC	1 cut(s)	373
EcoT14I	CCWWGG	3 cut(s)	50, 69, 366
ErhI	CCWWGG	3 cut(s)	50, 69, 366
FaeI	CATG	2 cut(s)	266, 344
FaiI	YATR	3 cut(s)	264, 342, 362
FatI	CATG	2 cut(s)	262, 340
FbaI	TGATCA	1 cut(s)	186
Fnu4HI	GCNGC	2 cut(s)	75, 288
Fsp4HI	GCNGC	2 cut(s)	75, 288
FspI	TGCGCA	1 cut(s)	228
GlaI	GCGC	2 cut(s)	228, 350
GluI	GCNGC	2 cut(s)	75, 288
HaeIII	GGCC	3 cut(s)	5, 89, 296
HapII	CCGG	3 cut(s)	36, 99, 132
HgaI	GACGC	1 cut(s)	340
HhaI	GCGC	2 cut(s)	229, 351
Hin1II	CATG	2 cut(s)	266, 344
Hin6I	GCGC	2 cut(s)	227, 349
HinP1I	GCGC	2 cut(s)	227, 349
HinfI	GANTC	1 cut(s)	390
HpaII	CCGG	3 cut(s)	36, 99, 132
Hpy166II	GTNNAC	1 cut(s)	33
Hpy188III	TCNNGA	6 cut(s)	149, 190, 205, 218, 238, 256
Hpy8I	GTNNAC	1 cut(s)	33
HpyAV	CCTTC	1 cut(s)	155
HpyCH4III	ACNGT	1 cut(s)	139
HpyCH4V	TGCA	1 cut(s)	280
HpyF10VI	GCNNNNNNNGC	4 cut(s)	71, 272, 293, 341
HpyF3I	CTNAG	1 cut(s)	291
Hsp92II	CATG	2 cut(s)	266, 344
HspAI	GCGC	2 cut(s)	227, 349
Ksp22I	TGATCA	1 cut(s)	186
Kzo9I	GATC	1 cut(s)	186
LguI	GCTCTTC	1 cut(s)	164
LmnI	GCTCC	3 cut(s)	52, 178, 201
Lsp1109I	GCAGC	1 cut(s)	61
MaeIII	GTNAC	1 cut(s)	352
MalI	GATC	1 cut(s)	188
MboI	GATC	1 cut(s)	186
MboII	GAAGA	2 cut(s)	121, 181
MfeI	CAATTG	1 cut(s)	59
MhlI	GDGCHC	1 cut(s)	176
MluCI	AATT	1 cut(s)	59
MnlI	CCTC	7 cut(s)	32, 95, 201, 277, 286, 310, 396
MseI	TTAA	1 cut(s)	409
MslI	CAYNNNNRTG	1 cut(s)	359
MspI	CCGG	3 cut(s)	36, 99, 132
MspR9I	CCNGG	2 cut(s)	132, 385
MunI	CAATTG	1 cut(s)	59
MvaI	CCWGG	1 cut(s)	385
MvnI	CGCG	1 cut(s)	351
MwoI	GCNNNNNNNGC	4 cut(s)	71, 272, 293, 341
NciI	CCSGG	1 cut(s)	132
NdeII	GATC	1 cut(s)	186
NlaIII	CATG	2 cut(s)	266, 344
NlaIV	GGNNCC	2 cut(s)	48, 90
NmuCI	GTSAC	1 cut(s)	352
NsbI	TGCGCA	1 cut(s)	228
PceI	AGGCCT	1 cut(s)	296
PciSI	GCTCTTC	1 cut(s)	164
PfeI	GAWTC	1 cut(s)	390
PflMI	CCANNNNNTGG	1 cut(s)	211
PkrI	GCNGC	2 cut(s)	76, 289
Psp6I	CCWGG	1 cut(s)	383
PspGI	CCWGG	1 cut(s)	383
PspN4I	GGNNCC	2 cut(s)	48, 90
PspPI	GGNCC	2 cut(s)	4, 88
PstI	CTGCAG	1 cut(s)	282
PstNI	CAGNNNCTG	1 cut(s)	211
RsaI	GTAC	2 cut(s)	10, 164
RsaNI	GTAC	2 cut(s)	9, 163
RseI	CAYNNNNRTG	1 cut(s)	359
SapI	GCTCTTC	1 cut(s)	164
SaqAI	TTAA	1 cut(s)	409
SatI	GCNGC	2 cut(s)	75, 288
Sau3AI	GATC	1 cut(s)	186
Sau96I	GGNCC	2 cut(s)	4, 88
ScrFI	CCNGG	2 cut(s)	132, 385
SduI	GDGCHC	1 cut(s)	176
SetI	ASST	6 cut(s)	106, 183, 198, 249, 303, 381
SfcI	CTRYAG	1 cut(s)	278
SmiMI	CAYNNNNRTG	1 cut(s)	359
Sse9I	AATT	1 cut(s)	59
SseBI	AGGCCT	1 cut(s)	296
SsiI	CCGC	3 cut(s)	127, 157, 287
StuI	AGGCCT	1 cut(s)	296
StyD4I	CCNGG	2 cut(s)	130, 383
StyI	CCWWGG	3 cut(s)	50, 69, 366
TaaI	ACNGT	1 cut(s)	139
TasI	AATT	1 cut(s)	59
TauI	GCSGC	1 cut(s)	290
TfiI	GAWTC	1 cut(s)	390
Tru1I	TTAA	1 cut(s)	409
Tru9I	TTAA	1 cut(s)	409
TscAI	CASTG	1 cut(s)	282
TseFI	GTSAC	1 cut(s)	352
TseI	GCWGC	1 cut(s)	74
Tsp45I	GTSAC	1 cut(s)	352
TspDTI	ATGAA	1 cut(s)	329
TspGWI	ACGGA	1 cut(s)	191
TspRI	CASTG	1 cut(s)	282
Van91I	CCANNNNNTGG	1 cut(s)	211

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.