Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0001010

Physical Location & Seq

Genomic Coordinates Reverse (-)

37685793 .. 37686796

Gene Structure 1004 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG304900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

ATGGCCCGTACGAAGCAGACTGCTCGAAAGTCGACCGGCGGCAAGGCTCCGAGGAAGCAACTGGCGACGAAGGCTGCCCGGAAGTCGGCCCCGACCACCGGAGGAGTGAAGAAGCCGCACAGGTACCGGCCTGGAACCGTGGCTCTCCGTGAAATCCGAAAGTACCAGAAGAGCACGGAGCTGTTGATCAGGAAGCTTCCGTTCCAGAGGCTTGTTCGTGAAATCGCTCAGGACTTCAAGACGGACCTGCGTTTCCAGAGCCACGCCGTGTTGGCCCTGCAGGAGGCGGCGGAGGCCTACCTCGTTGGGCTCTTCGAGGATACTAATCTGTGCGCCATTCATGCCAAGCGTGTTACTATTATGCCCAAGGATATCCAGCTTGCAAGGAGAATCAGGGGTGAGAGGGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000785 GO:0000786 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006323 GO:0006325 GO:0006333 GO:0006334 GO:0006996 GO:0008150 GO:0009987 GO:0016043 GO:0022607 GO:0031490 GO:0031491 GO:0031492 GO:0031497 GO:0032991 GO:0032993 GO:0034622 GO:0034728 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0044815 GO:0044877 GO:0051276 GO:0065003 GO:0065004 GO:0071103 GO:0071824 GO:0071840 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko05034 ko05202 ko05322 map05034 map05202 map05322

Pfam Domains

Protein Families

Histone

Protein Analysis

136

Amino Acids

15.41

Weight (kDa)

11.15

Isoelectric Point (pI)

38.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Histone	PF00125	44 - 131	1e-38	Core histone H2A/H2B/H3/H4 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001010)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G40030 AT4G40030 AT4G40030 AT4G40040 AT4G40040 AT4G40040 AT5G10980
fragaria_vesca	FvH4_1g20270 FvH4_1g28601 FvH4_1g29790 FvH4_5g36680
malus_domestica	MD01G1035300.v1.1 MD15G1320600.v1.1 MD15G1373700.v1.1
prunus_persica	Prupe.1G369600_v2.0.a1 Prupe.1G522300_v2.0.a1 Prupe.1G522300_v2.0.a1 Prupe.6G192700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0112411 RchiOBHm_Chr3g0495821 RchiOBHm_Chr6g0302291 RchiOBHm_Chr6g0302361 RchiOBHm_Chr7g0242651
rosa_laevigata	RLG00000011180 RLG00000017978 RLG00000022586 RLG00000022760 RLG00000022761
rosa_multiflora	Rmu_sc0003633.1_g000017 Rmu_ssc0000254.1_g000002
rosa_roxburghii	Rroxscaffold_2G00131460 Rroxscaffold_3G00222610 Rroxscaffold_6G00392220
rosa_rugosa	Rorug03G0254300 Rorug03G0276700 Rorug06G0313800 Rorug07G0315900 Rorug07G0316000
rosa_samantha	Rh2AG233800 Rh2BG247000 Rh2CG238100 Rh2DG241300 Rh3AG304900 Rh3AG324000 Rh3BG340700 Rh3BG340800 Rh3BG360000 Rh3DG339900 Rh3DG359400 Rh6AG426500 Rh6BG476000 Rh6BG476100 Rh6DG425900 Rh6DG426000 Rh7AG471000 Rh7BG441300
rosa_wichuraiana	Rw0G005470 Rw2G018090 Rw3G026860 Rw3G028330 Rw7G039260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	255
Acc65I	GGTACC	1 cut(s)	123
AccB1I	GGYRCC	1 cut(s)	123
AccI	GTMKAC	1 cut(s)	32
AciI	CCGC	4 cut(s)	39, 116, 287, 290
AdeI	CACNNNGTG	1 cut(s)	268
AfaI	GTAC	3 cut(s)	10, 125, 164
AfiI	CCNNNNNNNGG	3 cut(s)	85, 98, 283
AgsI	TTSAA	1 cut(s)	238
AjnI	CCWGG	1 cut(s)	130
AluBI	AGCT	3 cut(s)	181, 196, 379
AluI	AGCT	3 cut(s)	181, 196, 379
Alw21I	GWGCWC	1 cut(s)	176
AoxI	GGCC	5 cut(s)	3, 87, 128, 273, 294
ApeKI	GCWGC	1 cut(s)	74
Asp718I	GGTACC	1 cut(s)	123
AspLEI	GCGC	1 cut(s)	335
AspS9I	GGNCC	4 cut(s)	4, 88, 244, 274
AsuC2I	CCSGG	1 cut(s)	79
AsuHPI	GGTGA	1 cut(s)	410
AvaII	GGWCC	1 cut(s)	244
BanI	GGYRCC	1 cut(s)	123
BanII	GRGCYC	1 cut(s)	312
Bbv12I	GWGCWC	1 cut(s)	176
BbvI	GCAGC	1 cut(s)	61
BceAI	ACGGC	1 cut(s)	251
BcgI	CGANNNNNNTGC	2 cut(s)	5, 39
BciT130I	CCWGG	1 cut(s)	132
BciVI	GTATCC	1 cut(s)	313
BclI	TGATCA	1 cut(s)	186
BcnI	CCSGG	1 cut(s)	79
BfmI	CTRYAG	1 cut(s)	278
BfuAI	ACCTGC	1 cut(s)	255
BfuI	GTATCC	1 cut(s)	313
BglI	GCCNNNNNGGC	1 cut(s)	272
BisI	GCNGC	4 cut(s)	40, 75, 116, 288
BlsI	GCNGC	4 cut(s)	41, 76, 117, 289
Bme1390I	CCNGG	2 cut(s)	79, 132
Bme18I	GGWCC	1 cut(s)	244
BmgT120I	GGNCC	4 cut(s)	4, 88, 244, 274
BmiI	GGNNCC	4 cut(s)	48, 90, 125, 136
BmrFI	CCNGG	2 cut(s)	79, 132
Bpu10I	CCTNAGC	1 cut(s)	228
BpuMI	CCSGG	1 cut(s)	79
BsaBI	GATNNNNATC	1 cut(s)	324
BsaJI	CCNNGG	3 cut(s)	50, 138, 366
BsaWI	WCCGGW	1 cut(s)	98
Bsc4I	CCNNNNNNNGG	3 cut(s)	85, 98, 283
Bse118I	RCCGGY	2 cut(s)	35, 126
Bse1I	ACTGG	1 cut(s)	66
Bse8I	GATNNNNATC	1 cut(s)	324
BseBI	CCWGG	1 cut(s)	132
BseDI	CCNNGG	3 cut(s)	50, 138, 366
BseJI	GATNNNNATC	1 cut(s)	324
BseLI	CCNNNNNNNGG	3 cut(s)	85, 98, 283
BseMII	CTCAG	1 cut(s)	242
BseNI	ACTGG	1 cut(s)	66
BseRI	GAGGAG	1 cut(s)	117
BseXI	GCAGC	1 cut(s)	61
Bsh1285I	CGRYCG	1 cut(s)	36
BshFI	GGCC	5 cut(s)	5, 89, 130, 275, 296
BshNI	GGYRCC	1 cut(s)	123
BsiEI	CGRYCG	1 cut(s)	36
BsiHKAI	GWGCWC	1 cut(s)	176
BsiSI	CCGG	4 cut(s)	36, 79, 99, 127
BsiWI	CGTACG	1 cut(s)	8
BslI	CCNNNNNNNGG	3 cut(s)	85, 98, 283
BsnI	GGCC	5 cut(s)	5, 89, 130, 275, 296
Bsp1286I	GDGCHC	2 cut(s)	176, 312
Bsp143I	GATC	1 cut(s)	186
BspACI	CCGC	4 cut(s)	39, 116, 287, 290
BspANI	GGCC	5 cut(s)	5, 89, 130, 275, 296
BspCNI	CTCAG	1 cut(s)	241
BspLI	GGNNCC	4 cut(s)	48, 90, 125, 136
BspMAI	CTGCAG	1 cut(s)	282
BspMI	ACCTGC	1 cut(s)	255
BspQI	GCTCTTC	2 cut(s)	164, 317
BspT107I	GGYRCC	1 cut(s)	123
BsrFI	RCCGGY	2 cut(s)	35, 126
BsrI	ACTGG	1 cut(s)	66
BssAI	RCCGGY	2 cut(s)	35, 126
BssECI	CCNNGG	3 cut(s)	50, 138, 366
BssMI	GATC	1 cut(s)	186
BssT1I	CCWWGG	1 cut(s)	366
Bst2UI	CCWGG	1 cut(s)	132
Bst4CI	ACNGT	1 cut(s)	139
Bst6I	CTCTTC	2 cut(s)	164, 317
BstC8I	GCNNGC	1 cut(s)	381
BstDEI	CTNAG	1 cut(s)	228
BstDSI	CCRYGG	1 cut(s)	138
BstENI	CCTNNNNNAGG	1 cut(s)	281
BstHHI	GCGC	1 cut(s)	335
BstKTI	GATC	1 cut(s)	189
BstMBI	GATC	1 cut(s)	186
BstMCI	CGRYCG	1 cut(s)	36
BstMWI	GCNNNNNNNGC	4 cut(s)	71, 272, 293, 341
BstNI	CCWGG	1 cut(s)	132
BstSCI	CCNGG	2 cut(s)	77, 130
BstSFI	CTRYAG	1 cut(s)	278
BstV1I	GCAGC	1 cut(s)	61
BsuI	GTATCC	1 cut(s)	313
BsuRI	GGCC	5 cut(s)	5, 89, 130, 275, 296
BtgI	CCRYGG	1 cut(s)	138
BveI	ACCTGC	1 cut(s)	255
Cac8I	GCNNGC	1 cut(s)	381
CfoI	GCGC	1 cut(s)	335
Cfr10I	RCCGGY	2 cut(s)	35, 126
Cfr13I	GGNCC	4 cut(s)	4, 88, 244, 274
Csp6I	GTAC	3 cut(s)	9, 124, 163
CviAII	CATG	1 cut(s)	341
CviQI	GTAC	3 cut(s)	9, 124, 163
DdeI	CTNAG	1 cut(s)	228
DpnI	GATC	1 cut(s)	188
DpnII	GATC	1 cut(s)	186
DraIII	CACNNNGTG	1 cut(s)	268
Eam1104I	CTCTTC	2 cut(s)	164, 317
EarI	CTCTTC	2 cut(s)	164, 317
EciI	GGCGGA	1 cut(s)	305
Eco130I	CCWWGG	1 cut(s)	366
Eco147I	AGGCCT	1 cut(s)	296
Eco24I	GRGCYC	1 cut(s)	312
Eco32I	GATATC	1 cut(s)	373
Eco47I	GGWCC	1 cut(s)	244
EcoNI	CCTNNNNNAGG	1 cut(s)	281
EcoRII	CCWGG	1 cut(s)	130
EcoRV	GATATC	1 cut(s)	373
EcoT14I	CCWWGG	1 cut(s)	366
EcoT38I	GRGCYC	1 cut(s)	312
ErhI	CCWWGG	1 cut(s)	366
FaeI	CATG	1 cut(s)	344
FaiI	YATR	2 cut(s)	342, 362
FatI	CATG	1 cut(s)	340
FbaI	TGATCA	1 cut(s)	186
FblI	GTMKAC	1 cut(s)	32
Fnu4HI	GCNGC	4 cut(s)	40, 75, 116, 288
FriOI	GRGCYC	1 cut(s)	312
Fsp4HI	GCNGC	4 cut(s)	40, 75, 116, 288
GlaI	GCGC	1 cut(s)	334
GluI	GCNGC	4 cut(s)	40, 75, 116, 288
HaeIII	GGCC	5 cut(s)	5, 89, 130, 275, 296
HapII	CCGG	4 cut(s)	36, 79, 99, 127
HhaI	GCGC	1 cut(s)	335
Hin1II	CATG	1 cut(s)	344
Hin6I	GCGC	1 cut(s)	333
HinP1I	GCGC	1 cut(s)	333
HincII	GTYRAC	1 cut(s)	33
HindII	GTYRAC	1 cut(s)	33
HindIII	AAGCTT	1 cut(s)	194
HinfI	GANTC	1 cut(s)	390
HpaII	CCGG	4 cut(s)	36, 79, 99, 127
HphI	GGTGA	1 cut(s)	410
Hpy166II	GTNNAC	1 cut(s)	33
Hpy188I	TCNGA	2 cut(s)	51, 158
Hpy188III	TCNNGA	6 cut(s)	190, 205, 218, 230, 238, 256
Hpy8I	GTNNAC	1 cut(s)	33
Hpy99I	CGWCG	1 cut(s)	70
HpyAV	CCTTC	1 cut(s)	64
HpyCH4III	ACNGT	1 cut(s)	139
HpyCH4V	TGCA	2 cut(s)	280, 383
HpyF10VI	GCNNNNNNNGC	4 cut(s)	71, 272, 293, 341
HpyF3I	CTNAG	1 cut(s)	228
Hsp92II	CATG	1 cut(s)	344
HspAI	GCGC	1 cut(s)	333
KpnI	GGTACC	1 cut(s)	127
Ksp22I	TGATCA	1 cut(s)	186
Kzo9I	GATC	1 cut(s)	186
LguI	GCTCTTC	2 cut(s)	164, 317
LmnI	GCTCC	2 cut(s)	52, 178
Lsp1109I	GCAGC	1 cut(s)	61
MaeIII	GTNAC	1 cut(s)	352
MalI	GATC	1 cut(s)	188
MboI	GATC	1 cut(s)	186
MboII	GAAGA	3 cut(s)	121, 181, 304
MhlI	GDGCHC	2 cut(s)	176, 312
MnlI	CCTC	8 cut(s)	45, 95, 201, 277, 286, 310, 311, 396
MseI	TTAA	1 cut(s)	409
MspI	CCGG	4 cut(s)	36, 79, 99, 127
MspR9I	CCNGG	2 cut(s)	79, 132
MvaI	CCWGG	1 cut(s)	132
MwoI	GCNNNNNNNGC	4 cut(s)	71, 272, 293, 341
NciI	CCSGG	1 cut(s)	79
NdeII	GATC	1 cut(s)	186
NlaIII	CATG	1 cut(s)	344
NlaIV	GGNNCC	4 cut(s)	48, 90, 125, 136
PceI	AGGCCT	1 cut(s)	296
PciSI	GCTCTTC	2 cut(s)	164, 317
PfeI	GAWTC	1 cut(s)	390
Pfl23II	CGTACG	1 cut(s)	8
PkrI	GCNGC	4 cut(s)	41, 76, 117, 289
Psp6I	CCWGG	1 cut(s)	130
PspGI	CCWGG	1 cut(s)	130
PspLI	CGTACG	1 cut(s)	8
PspN4I	GGNNCC	4 cut(s)	48, 90, 125, 136
PspPI	GGNCC	4 cut(s)	4, 88, 244, 274
PstI	CTGCAG	1 cut(s)	282
RsaI	GTAC	3 cut(s)	10, 125, 164
RsaNI	GTAC	3 cut(s)	9, 124, 163
SalI	GTCGAC	1 cut(s)	31
SapI	GCTCTTC	2 cut(s)	164, 317
SaqAI	TTAA	1 cut(s)	409
SatI	GCNGC	4 cut(s)	40, 75, 116, 288
Sau3AI	GATC	1 cut(s)	186
Sau96I	GGNCC	4 cut(s)	4, 88, 244, 274
SbfI	CCTGCAGG	1 cut(s)	282
ScrFI	CCNGG	2 cut(s)	79, 132
SdaI	CCTGCAGG	1 cut(s)	282
SduI	GDGCHC	2 cut(s)	176, 312
SetI	ASST	6 cut(s)	125, 183, 198, 249, 303, 381
SfcI	CTRYAG	1 cut(s)	278
SinI	GGWCC	1 cut(s)	244
Sse8387I	CCTGCAGG	1 cut(s)	282
SseBI	AGGCCT	1 cut(s)	296
SsiI	CCGC	4 cut(s)	39, 116, 287, 290
StuI	AGGCCT	1 cut(s)	296
StyD4I	CCNGG	2 cut(s)	77, 130
StyI	CCWWGG	1 cut(s)	366
TaaI	ACNGT	1 cut(s)	139
TaqI	TCGA	3 cut(s)	25, 32, 315
TauI	GCSGC	3 cut(s)	42, 118, 290
TfiI	GAWTC	1 cut(s)	390
Tru1I	TTAA	1 cut(s)	409
Tru9I	TTAA	1 cut(s)	409
TseI	GCWGC	1 cut(s)	74
TspDTI	ATGAA	1 cut(s)	329
TspGWI	ACGGA	4 cut(s)	137, 189, 191, 257
VpaK11BI	GGWCC	1 cut(s)	244
XagI	CCTNNNNNAGG	1 cut(s)	281
XmiI	GTMKAC	1 cut(s)	32

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.