Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001010

Physical Location & Seq

Genomic Coordinates Reverse (-)

3472405 .. 3473570

Gene Structure 1166 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G10980.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

ATGGCTCGTACCAAGCAAACCGCTAGGAAATCCACCGGAGGTAAAGCTCCCAGGAAGCAGCTTGCCACCAAGGCGGCGAGGAAATCAGCACCAACCACCGGAGGAGTCAAGAAGCCTCACCGTTACCGTCCAGGAACCGTCGCTCTTCGTGAGATTCGTAAGTACCAGAAGAGTACTGAATTGTTGATCCGCAAGCTTCCCTTCCAGCGTCTCGTTCGGGAAATAGCTCAGGACTTCAAGACGGATCTGAGGTTTCAGAGTCACGCGGTGTTAGCTCTTCAAGAGGCGGCTGAGGCATACCTAGTTGGACTTTTCGAGGATACTAATCTCTGCGCTATTCACGCCAAGAGGGTTACGATCATGCCTAAGGACATTCAATTGGCTAGAAGAATTCGTGGAGAACGTGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000785 GO:0000786 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006323 GO:0006325 GO:0006333 GO:0006334 GO:0006996 GO:0008150 GO:0009987 GO:0016043 GO:0022607 GO:0031490 GO:0031491 GO:0031492 GO:0031497 GO:0032991 GO:0032993 GO:0034622 GO:0034728 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0044815 GO:0044877 GO:0051276 GO:0065003 GO:0065004 GO:0071103 GO:0071824 GO:0071840 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko05034 ko05202 ko05322 map05034 map05202 map05322

Pfam Domains

Protein Families

Histone

Protein Analysis

136

Amino Acids

15.41

Weight (kDa)

11.15

Isoelectric Point (pI)

38.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Histone	PF00125	44 - 131	1e-38	Core histone H2A/H2B/H3/H4 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001010)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G40030 AT4G40030 AT4G40030 AT4G40040 AT4G40040 AT4G40040 AT5G10980
fragaria_vesca	FvH4_1g20270 FvH4_1g28601 FvH4_1g29790 FvH4_5g36680
malus_domestica	MD01G1035300.v1.1 MD15G1320600.v1.1 MD15G1373700.v1.1
prunus_persica	Prupe.1G369600_v2.0.a1 Prupe.1G522300_v2.0.a1 Prupe.1G522300_v2.0.a1 Prupe.6G192700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0112411 RchiOBHm_Chr3g0495821 RchiOBHm_Chr6g0302291 RchiOBHm_Chr6g0302361 RchiOBHm_Chr7g0242651
rosa_laevigata	RLG00000011180 RLG00000017978 RLG00000022586 RLG00000022760 RLG00000022761
rosa_multiflora	Rmu_sc0003633.1_g000017 Rmu_ssc0000254.1_g000002
rosa_roxburghii	Rroxscaffold_2G00131460 Rroxscaffold_3G00222610 Rroxscaffold_6G00392220
rosa_rugosa	Rorug03G0254300 Rorug03G0276700 Rorug06G0313800 Rorug07G0315900 Rorug07G0316000
rosa_samantha	Rh2AG233800 Rh2BG247000 Rh2CG238100 Rh2DG241300 Rh3AG304900 Rh3AG324000 Rh3BG340700 Rh3BG340800 Rh3BG360000 Rh3DG339900 Rh3DG359400 Rh6AG426500 Rh6BG476000 Rh6BG476100 Rh6DG425900 Rh6DG426000 Rh7AG471000 Rh7BG441300
rosa_wichuraiana	Rw0G005470 Rw2G018090 Rw3G026860 Rw3G028330 Rw7G039260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	266
AciI	CCGC	5 cut(s)	21, 74, 190, 266, 287
AclWI	GGATC	2 cut(s)	181, 252
AcsI	RAATTY	1 cut(s)	390
AdeI	CACNNNGTG	1 cut(s)	268
AfaI	GTAC	3 cut(s)	10, 164, 175
AfiI	CCNNNNNNNGG	1 cut(s)	98
AgsI	TTSAA	3 cut(s)	238, 281, 377
AjnI	CCWGG	2 cut(s)	50, 130
AluBI	AGCT	5 cut(s)	47, 61, 196, 227, 275
AluI	AGCT	5 cut(s)	47, 61, 196, 227, 275
Alw26I	GTCTC	1 cut(s)	215
AlwI	GGATC	2 cut(s)	181, 252
ApeKI	GCWGC	1 cut(s)	58
ApoI	RAATTY	1 cut(s)	390
AspLEI	GCGC	1 cut(s)	335
AsuHPI	GGTGA	1 cut(s)	110
AxyI	CCTNAGG	1 cut(s)	366
BbvCI	CCTCAGC	1 cut(s)	291
BbvI	GCAGC	1 cut(s)	70
BciT130I	CCWGG	2 cut(s)	52, 132
BciVI	GTATCC	1 cut(s)	313
BcoDI	GTCTC	1 cut(s)	215
BfaI	CTAG	3 cut(s)	24, 302, 384
BfuI	GTATCC	1 cut(s)	313
BglI	GCCNNNNNGGC	1 cut(s)	71
BisI	GCNGC	3 cut(s)	59, 75, 288
BlsI	GCNGC	3 cut(s)	60, 76, 289
BmcAI	AGTACT	1 cut(s)	175
Bme1390I	CCNGG	2 cut(s)	52, 132
BmiI	GGNNCC	1 cut(s)	136
BmrFI	CCNGG	2 cut(s)	52, 132
Bpu10I	CCTNAGC	2 cut(s)	228, 291
BsaBI	GATNNNNATC	1 cut(s)	324
BsaJI	CCNNGG	2 cut(s)	50, 69
BsaWI	WCCGGW	2 cut(s)	35, 98
Bsc4I	CCNNNNNNNGG	1 cut(s)	98
Bse21I	CCTNAGG	1 cut(s)	366
Bse8I	GATNNNNATC	1 cut(s)	324
BseBI	CCWGG	2 cut(s)	52, 132
BseDI	CCNNGG	2 cut(s)	50, 69
BseJI	GATNNNNATC	1 cut(s)	324
BseLI	CCNNNNNNNGG	1 cut(s)	98
BseMII	CTCAG	3 cut(s)	239, 242, 282
BseRI	GAGGAG	1 cut(s)	117
BseXI	GCAGC	1 cut(s)	70
Bsh1236I	CGCG	1 cut(s)	266
BsiSI	CCGG	2 cut(s)	36, 99
BslI	CCNNNNNNNGG	1 cut(s)	98
BsmAI	GTCTC	1 cut(s)	215
BsmBI	CGTCTC	1 cut(s)	215
Bsp143I	GATC	3 cut(s)	186, 244, 357
BspACI	CCGC	5 cut(s)	21, 74, 190, 266, 287
BspCNI	CTCAG	3 cut(s)	240, 241, 283
BspFNI	CGCG	1 cut(s)	266
BspLI	GGNNCC	1 cut(s)	136
BspPI	GGATC	2 cut(s)	181, 252
BspQI	GCTCTTC	2 cut(s)	150, 282
BssECI	CCNNGG	2 cut(s)	50, 69
BssMI	GATC	3 cut(s)	186, 244, 357
BssT1I	CCWWGG	1 cut(s)	69
Bst2UI	CCWGG	2 cut(s)	52, 132
Bst4CI	ACNGT	3 cut(s)	122, 128, 139
Bst6I	CTCTTC	3 cut(s)	150, 164, 282
BstC8I	GCNNGC	2 cut(s)	63, 194
BstDEI	CTNAG	4 cut(s)	228, 248, 291, 366
BstFNI	CGCG	1 cut(s)	266
BstHHI	GCGC	1 cut(s)	335
BstKTI	GATC	3 cut(s)	189, 247, 360
BstMAI	GTCTC	1 cut(s)	215
BstMBI	GATC	3 cut(s)	186, 244, 357
BstMWI	GCNNNNNNNGC	4 cut(s)	71, 272, 293, 341
BstNI	CCWGG	2 cut(s)	52, 132
BstSCI	CCNGG	2 cut(s)	50, 130
BstUI	CGCG	1 cut(s)	266
BstV1I	GCAGC	1 cut(s)	70
BstX2I	RGATCY	1 cut(s)	244
BstYI	RGATCY	1 cut(s)	244
Bsu36I	CCTNAGG	1 cut(s)	366
BsuI	GTATCC	1 cut(s)	313
Cac8I	GCNNGC	2 cut(s)	63, 194
CfoI	GCGC	1 cut(s)	335
CseI	GACGC	1 cut(s)	197
Csp6I	GTAC	3 cut(s)	9, 163, 174
CviAII	CATG	1 cut(s)	361
CviJI	RGCY	9 cut(s)	5, 47, 61, 115, 196, 227, 275, 290, 383
CviKI_1	RGCY	9 cut(s)	5, 47, 61, 115, 196, 227, 275, 290, 383
CviQI	GTAC	3 cut(s)	9, 163, 174
DdeI	CTNAG	4 cut(s)	228, 248, 291, 366
DpnI	GATC	3 cut(s)	188, 246, 359
DpnII	GATC	3 cut(s)	186, 244, 357
DraIII	CACNNNGTG	1 cut(s)	268
Eam1104I	CTCTTC	3 cut(s)	150, 164, 282
EarI	CTCTTC	3 cut(s)	150, 164, 282
Eco130I	CCWWGG	1 cut(s)	69
Eco81I	CCTNAGG	1 cut(s)	366
EcoRI	GAATTC	1 cut(s)	390
EcoRII	CCWGG	2 cut(s)	50, 130
EcoT14I	CCWWGG	1 cut(s)	69
ErhI	CCWWGG	1 cut(s)	69
Esp3I	CGTCTC	1 cut(s)	215
FaeI	CATG	1 cut(s)	364
FaiI	YATR	2 cut(s)	298, 362
FalI	AAGNNNNNCTT	2 cut(s)	185, 217
FatI	CATG	1 cut(s)	360
Fnu4HI	GCNGC	3 cut(s)	59, 75, 288
Fsp4HI	GCNGC	3 cut(s)	59, 75, 288
FspBI	CTAG	3 cut(s)	24, 302, 384
GlaI	GCGC	1 cut(s)	334
GluI	GCNGC	3 cut(s)	59, 75, 288
HapII	CCGG	2 cut(s)	36, 99
HgaI	GACGC	1 cut(s)	197
HhaI	GCGC	1 cut(s)	335
Hin1II	CATG	1 cut(s)	364
Hin6I	GCGC	1 cut(s)	333
HinP1I	GCGC	1 cut(s)	333
HindIII	AAGCTT	1 cut(s)	194
HinfI	GANTC	3 cut(s)	105, 154, 259
HpaII	CCGG	2 cut(s)	36, 99
HphI	GGTGA	1 cut(s)	110
Hpy188I	TCNGA	2 cut(s)	249, 258
Hpy188III	TCNNGA	6 cut(s)	109, 149, 218, 230, 238, 281
Hpy99I	CGWCG	1 cut(s)	143
HpyAV	CCTTC	1 cut(s)	211
HpyCH4III	ACNGT	3 cut(s)	122, 128, 139
HpyCH4IV	ACGT	1 cut(s)	403
HpyF10VI	GCNNNNNNNGC	4 cut(s)	71, 272, 293, 341
HpyF3I	CTNAG	4 cut(s)	228, 248, 291, 366
HpySE526I	ACGT	1 cut(s)	403
Hsp92II	CATG	1 cut(s)	364
HspAI	GCGC	1 cut(s)	333
Kzo9I	GATC	3 cut(s)	186, 244, 357
LguI	GCTCTTC	2 cut(s)	150, 282
LmnI	GCTCC	1 cut(s)	52
LpnPI	CCDG	9 cut(s)	37, 49, 64, 112, 117, 144, 179, 215, 218
Lsp1109I	GCAGC	1 cut(s)	70
MaeI	CTAG	3 cut(s)	24, 302, 384
MaeII	ACGT	1 cut(s)	403
MaeIII	GTNAC	3 cut(s)	122, 260, 352
MalI	GATC	3 cut(s)	188, 246, 359
MboI	GATC	3 cut(s)	186, 244, 357
MboII	GAAGA	4 cut(s)	137, 181, 269, 399
MfeI	CAATTG	1 cut(s)	377
MflI	RGATCY	1 cut(s)	244
MluCI	AATT	3 cut(s)	179, 377, 390
MlyI	GAGTC	2 cut(s)	114, 268
MmeI	TCCRAC	1 cut(s)	286
MnlI	CCTC	9 cut(s)	32, 72, 95, 126, 243, 277, 286, 310, 342
MseI	TTAA	1 cut(s)	409
MspI	CCGG	2 cut(s)	36, 99
MspR9I	CCNGG	2 cut(s)	52, 132
MunI	CAATTG	1 cut(s)	377
MvaI	CCWGG	2 cut(s)	52, 132
MvnI	CGCG	1 cut(s)	266
MwoI	GCNNNNNNNGC	4 cut(s)	71, 272, 293, 341
NdeII	GATC	3 cut(s)	186, 244, 357
NlaIII	CATG	1 cut(s)	364
NlaIV	GGNNCC	1 cut(s)	136
NmuCI	GTSAC	1 cut(s)	260
PciSI	GCTCTTC	2 cut(s)	150, 282
PcsI	WCGNNNNNNNCGW	2 cut(s)	154, 400
PfeI	GAWTC	1 cut(s)	154
PfoI	TCCNGGA	1 cut(s)	130
PkrI	GCNGC	3 cut(s)	60, 76, 289
PleI	GAGTC	2 cut(s)	113, 267
PpsI	GAGTC	2 cut(s)	113, 267
Psp6I	CCWGG	2 cut(s)	50, 130
PspGI	CCWGG	2 cut(s)	50, 130
PspN4I	GGNNCC	1 cut(s)	136
PsuI	RGATCY	1 cut(s)	244
RsaI	GTAC	3 cut(s)	10, 164, 175
RsaNI	GTAC	3 cut(s)	9, 163, 174
SapI	GCTCTTC	2 cut(s)	150, 282
SaqAI	TTAA	1 cut(s)	409
SatI	GCNGC	3 cut(s)	59, 75, 288
Sau3AI	GATC	3 cut(s)	186, 244, 357
ScaI	AGTACT	1 cut(s)	175
SchI	GAGTC	2 cut(s)	114, 268
ScrFI	CCNGG	2 cut(s)	52, 132
SetI	ASST	9 cut(s)	43, 49, 63, 198, 229, 254, 277, 303, 406
Sse9I	AATT	3 cut(s)	179, 377, 390
SsiI	CCGC	5 cut(s)	21, 74, 190, 266, 287
SspMI	CTAG	3 cut(s)	24, 302, 384
StyD4I	CCNGG	2 cut(s)	50, 130
StyI	CCWWGG	1 cut(s)	69
TaaI	ACNGT	3 cut(s)	122, 128, 139
TaiI	ACGT	1 cut(s)	406
TaqI	TCGA	1 cut(s)	315
TasI	AATT	3 cut(s)	179, 377, 390
TatI	WGTACW	1 cut(s)	173
TauI	GCSGC	2 cut(s)	77, 290
TfiI	GAWTC	1 cut(s)	154
Tru1I	TTAA	1 cut(s)	409
Tru9I	TTAA	1 cut(s)	409
TseFI	GTSAC	1 cut(s)	260
TseI	GCWGC	1 cut(s)	58
Tsp45I	GTSAC	1 cut(s)	260
TspGWI	ACGGA	1 cut(s)	257
XapI	RAATTY	1 cut(s)	390
XspI	CTAG	3 cut(s)	24, 302, 384
ZrmI	AGTACT	1 cut(s)	175

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.