Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0001010

Physical Location & Seq

Genomic Coordinates Forward (+)

11661610 .. 11662020

Gene Structure 411 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00392220.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

ATGGCCCGTACGAAGCAGACTGCTCGGAAGTCGACCGGTGGCAAGGCTCCGAGGAAGCAACTGGCGACGAAGGCTGCCCGGAAGTCGGCCCCGACCACCGGAGGAGTGAAGAAGCCGCACAGGTACCGCCCTGGAACGGTGGCTCTCCGTGAAATCCGAAAGTACCAGAAGAGCACGGAGCTGCTGATAAGGAAGCTTCCGTTCCAGAGGCTTGTTCGTGAAATCGCTCAGGACTTCAAGACGGACCTGCGTTTCCAGAGCCACGCGGTGTTGGCGCTGCAGGAGGCGGCGGAGGCCTACCTCGTTGGGTTGTTTGAGGATACTAATCTGTGCGCCATTCATGCCAAGCGTGTTACTATTATGCCCAAGGATATCCAGCTTGCTAGGAGAATCAGGGGTGAGAGGGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000785 GO:0000786 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006323 GO:0006325 GO:0006333 GO:0006334 GO:0006996 GO:0008150 GO:0009987 GO:0016043 GO:0022607 GO:0031490 GO:0031491 GO:0031492 GO:0031497 GO:0032991 GO:0032993 GO:0034622 GO:0034728 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0044815 GO:0044877 GO:0051276 GO:0065003 GO:0065004 GO:0071103 GO:0071824 GO:0071840 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko05034 ko05202 ko05322 map05034 map05202 map05322

Pfam Domains

Protein Families

Histone

Protein Analysis

136

Amino Acids

15.41

Weight (kDa)

11.15

Isoelectric Point (pI)

38.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Histone	PF00125	44 - 131	1e-38	Core histone H2A/H2B/H3/H4 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001010)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G40030 AT4G40030 AT4G40030 AT4G40040 AT4G40040 AT4G40040 AT5G10980
fragaria_vesca	FvH4_1g20270 FvH4_1g28601 FvH4_1g29790 FvH4_5g36680
malus_domestica	MD01G1035300.v1.1 MD15G1320600.v1.1 MD15G1373700.v1.1
prunus_persica	Prupe.1G369600_v2.0.a1 Prupe.1G522300_v2.0.a1 Prupe.1G522300_v2.0.a1 Prupe.6G192700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0112411 RchiOBHm_Chr3g0495821 RchiOBHm_Chr6g0302291 RchiOBHm_Chr6g0302361 RchiOBHm_Chr7g0242651
rosa_laevigata	RLG00000011180 RLG00000017978 RLG00000022586 RLG00000022760 RLG00000022761
rosa_multiflora	Rmu_sc0003633.1_g000017 Rmu_ssc0000254.1_g000002
rosa_roxburghii	Rroxscaffold_2G00131460 Rroxscaffold_3G00222610 Rroxscaffold_6G00392220
rosa_rugosa	Rorug03G0254300 Rorug03G0276700 Rorug06G0313800 Rorug07G0315900 Rorug07G0316000
rosa_samantha	Rh2AG233800 Rh2BG247000 Rh2CG238100 Rh2DG241300 Rh3AG304900 Rh3AG324000 Rh3BG340700 Rh3BG340800 Rh3BG360000 Rh3DG339900 Rh3DG359400 Rh6AG426500 Rh6BG476000 Rh6BG476100 Rh6DG425900 Rh6DG426000 Rh7AG471000 Rh7BG441300
rosa_wichuraiana	Rw0G005470 Rw2G018090 Rw3G026860 Rw3G028330 Rw7G039260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	255
Acc65I	GGTACC	1 cut(s)	123
AccB1I	GGYRCC	1 cut(s)	123
AccI	GTMKAC	1 cut(s)	32
AccII	CGCG	1 cut(s)	266
AciI	CCGC	5 cut(s)	116, 127, 266, 287, 290
AdeI	CACNNNGTG	1 cut(s)	268
AfaI	GTAC	3 cut(s)	10, 125, 164
AfiI	CCNNNNNNNGG	3 cut(s)	85, 98, 136
AgeI	ACCGGT	1 cut(s)	35
AgsI	TTSAA	1 cut(s)	238
AjnI	CCWGG	1 cut(s)	130
AluBI	AGCT	3 cut(s)	181, 196, 379
AluI	AGCT	3 cut(s)	181, 196, 379
Alw21I	GWGCWC	1 cut(s)	176
AoxI	GGCC	3 cut(s)	3, 87, 294
ApeKI	GCWGC	3 cut(s)	74, 181, 277
AsiGI	ACCGGT	1 cut(s)	35
Asp718I	GGTACC	1 cut(s)	123
AspLEI	GCGC	2 cut(s)	277, 335
AspS9I	GGNCC	3 cut(s)	4, 88, 244
AsuC2I	CCSGG	1 cut(s)	79
AsuHPI	GGTGA	1 cut(s)	410
AvaII	GGWCC	1 cut(s)	244
BanI	GGYRCC	1 cut(s)	123
Bbv12I	GWGCWC	1 cut(s)	176
BbvI	GCAGC	3 cut(s)	61, 168, 264
BcgI	CGANNNNNNTGC	2 cut(s)	5, 39
BciT130I	CCWGG	1 cut(s)	132
BciVI	GTATCC	1 cut(s)	313
BcnI	CCSGG	1 cut(s)	79
BfaI	CTAG	1 cut(s)	384
BfmI	CTRYAG	1 cut(s)	278
BfoI	RGCGCY	1 cut(s)	278
BfuAI	ACCTGC	1 cut(s)	255
BfuI	GTATCC	1 cut(s)	313
BisI	GCNGC	5 cut(s)	75, 116, 182, 278, 288
BlsI	GCNGC	5 cut(s)	76, 117, 183, 279, 289
Bme1390I	CCNGG	2 cut(s)	79, 132
Bme18I	GGWCC	1 cut(s)	244
BmgT120I	GGNCC	3 cut(s)	4, 88, 244
BmiI	GGNNCC	3 cut(s)	48, 90, 125
BmrFI	CCNGG	2 cut(s)	79, 132
Bpu10I	CCTNAGC	1 cut(s)	228
BpuMI	CCSGG	1 cut(s)	79
BsaBI	GATNNNNATC	1 cut(s)	324
BsaJI	CCNNGG	3 cut(s)	50, 130, 366
BsaWI	WCCGGW	2 cut(s)	35, 98
Bsc4I	CCNNNNNNNGG	3 cut(s)	85, 98, 136
Bse118I	RCCGGY	1 cut(s)	35
Bse1I	ACTGG	1 cut(s)	66
Bse8I	GATNNNNATC	1 cut(s)	324
BseBI	CCWGG	1 cut(s)	132
BseDI	CCNNGG	3 cut(s)	50, 130, 366
BseJI	GATNNNNATC	1 cut(s)	324
BseLI	CCNNNNNNNGG	3 cut(s)	85, 98, 136
BseMII	CTCAG	1 cut(s)	242
BseNI	ACTGG	1 cut(s)	66
BseRI	GAGGAG	1 cut(s)	117
BseXI	GCAGC	3 cut(s)	61, 168, 264
Bsh1236I	CGCG	1 cut(s)	266
Bsh1285I	CGRYCG	1 cut(s)	36
BshFI	GGCC	3 cut(s)	5, 89, 296
BshNI	GGYRCC	1 cut(s)	123
BshTI	ACCGGT	1 cut(s)	35
BsiEI	CGRYCG	1 cut(s)	36
BsiHKAI	GWGCWC	1 cut(s)	176
BsiSI	CCGG	3 cut(s)	36, 79, 99
BsiWI	CGTACG	1 cut(s)	8
BslI	CCNNNNNNNGG	3 cut(s)	85, 98, 136
BsnI	GGCC	3 cut(s)	5, 89, 296
Bsp1286I	GDGCHC	1 cut(s)	176
BspACI	CCGC	5 cut(s)	116, 127, 266, 287, 290
BspANI	GGCC	3 cut(s)	5, 89, 296
BspCNI	CTCAG	1 cut(s)	241
BspFNI	CGCG	1 cut(s)	266
BspLI	GGNNCC	3 cut(s)	48, 90, 125
BspMAI	CTGCAG	1 cut(s)	282
BspMI	ACCTGC	1 cut(s)	255
BspQI	GCTCTTC	1 cut(s)	164
BspT107I	GGYRCC	1 cut(s)	123
BsrFI	RCCGGY	1 cut(s)	35
BsrI	ACTGG	1 cut(s)	66
BssAI	RCCGGY	1 cut(s)	35
BssECI	CCNNGG	3 cut(s)	50, 130, 366
BssT1I	CCWWGG	1 cut(s)	366
Bst2UI	CCWGG	1 cut(s)	132
Bst4CI	ACNGT	1 cut(s)	139
Bst6I	CTCTTC	1 cut(s)	164
BstC8I	GCNNGC	1 cut(s)	381
BstDEI	CTNAG	1 cut(s)	228
BstFNI	CGCG	1 cut(s)	266
BstH2I	RGCGCY	1 cut(s)	278
BstHHI	GCGC	2 cut(s)	277, 335
BstMCI	CGRYCG	1 cut(s)	36
BstMWI	GCNNNNNNNGC	4 cut(s)	71, 272, 293, 341
BstNI	CCWGG	1 cut(s)	132
BstSCI	CCNGG	2 cut(s)	77, 130
BstSFI	CTRYAG	1 cut(s)	278
BstUI	CGCG	1 cut(s)	266
BstV1I	GCAGC	3 cut(s)	61, 168, 264
BsuI	GTATCC	1 cut(s)	313
BsuRI	GGCC	3 cut(s)	5, 89, 296
BveI	ACCTGC	1 cut(s)	255
Cac8I	GCNNGC	1 cut(s)	381
CfoI	GCGC	2 cut(s)	277, 335
Cfr10I	RCCGGY	1 cut(s)	35
Cfr13I	GGNCC	3 cut(s)	4, 88, 244
Csp6I	GTAC	3 cut(s)	9, 124, 163
CspAI	ACCGGT	1 cut(s)	35
CviAII	CATG	1 cut(s)	341
CviQI	GTAC	3 cut(s)	9, 124, 163
DdeI	CTNAG	1 cut(s)	228
DraIII	CACNNNGTG	1 cut(s)	268
Eam1104I	CTCTTC	1 cut(s)	164
EarI	CTCTTC	1 cut(s)	164
EciI	GGCGGA	1 cut(s)	305
Eco130I	CCWWGG	1 cut(s)	366
Eco147I	AGGCCT	1 cut(s)	296
Eco32I	GATATC	1 cut(s)	373
Eco47I	GGWCC	1 cut(s)	244
EcoRII	CCWGG	1 cut(s)	130
EcoRV	GATATC	1 cut(s)	373
EcoT14I	CCWWGG	1 cut(s)	366
ErhI	CCWWGG	1 cut(s)	366
FaeI	CATG	1 cut(s)	344
FaiI	YATR	2 cut(s)	342, 362
FatI	CATG	1 cut(s)	340
FblI	GTMKAC	1 cut(s)	32
Fnu4HI	GCNGC	5 cut(s)	75, 116, 182, 278, 288
Fsp4HI	GCNGC	5 cut(s)	75, 116, 182, 278, 288
FspBI	CTAG	1 cut(s)	384
GlaI	GCGC	2 cut(s)	276, 334
GluI	GCNGC	5 cut(s)	75, 116, 182, 278, 288
HaeII	RGCGCY	1 cut(s)	278
HaeIII	GGCC	3 cut(s)	5, 89, 296
HapII	CCGG	3 cut(s)	36, 79, 99
HhaI	GCGC	2 cut(s)	277, 335
Hin1II	CATG	1 cut(s)	344
Hin6I	GCGC	2 cut(s)	275, 333
HinP1I	GCGC	2 cut(s)	275, 333
HincII	GTYRAC	1 cut(s)	33
HindII	GTYRAC	1 cut(s)	33
HindIII	AAGCTT	1 cut(s)	194
HinfI	GANTC	1 cut(s)	390
HpaII	CCGG	3 cut(s)	36, 79, 99
HphI	GGTGA	1 cut(s)	410
Hpy166II	GTNNAC	1 cut(s)	33
Hpy188I	TCNGA	3 cut(s)	27, 51, 158
Hpy188III	TCNNGA	5 cut(s)	205, 218, 230, 238, 256
Hpy8I	GTNNAC	1 cut(s)	33
Hpy99I	CGWCG	1 cut(s)	70
HpyAV	CCTTC	1 cut(s)	64
HpyCH4III	ACNGT	1 cut(s)	139
HpyCH4V	TGCA	1 cut(s)	280
HpyF10VI	GCNNNNNNNGC	4 cut(s)	71, 272, 293, 341
HpyF3I	CTNAG	1 cut(s)	228
Hsp92II	CATG	1 cut(s)	344
HspAI	GCGC	2 cut(s)	275, 333
KpnI	GGTACC	1 cut(s)	127
LguI	GCTCTTC	1 cut(s)	164
LmnI	GCTCC	2 cut(s)	52, 178
Lsp1109I	GCAGC	3 cut(s)	61, 168, 264
MaeI	CTAG	1 cut(s)	384
MaeIII	GTNAC	1 cut(s)	352
MboII	GAAGA	2 cut(s)	121, 181
MhlI	GDGCHC	1 cut(s)	176
MnlI	CCTC	8 cut(s)	45, 95, 201, 277, 286, 310, 311, 396
MseI	TTAA	1 cut(s)	409
MspI	CCGG	3 cut(s)	36, 79, 99
MspR9I	CCNGG	2 cut(s)	79, 132
MvaI	CCWGG	1 cut(s)	132
MvnI	CGCG	1 cut(s)	266
MwoI	GCNNNNNNNGC	4 cut(s)	71, 272, 293, 341
NciI	CCSGG	1 cut(s)	79
NlaIII	CATG	1 cut(s)	344
NlaIV	GGNNCC	3 cut(s)	48, 90, 125
PceI	AGGCCT	1 cut(s)	296
PciSI	GCTCTTC	1 cut(s)	164
PfeI	GAWTC	1 cut(s)	390
Pfl23II	CGTACG	1 cut(s)	8
PinAI	ACCGGT	1 cut(s)	35
PkrI	GCNGC	5 cut(s)	76, 117, 183, 279, 289
Psp6I	CCWGG	1 cut(s)	130
PspGI	CCWGG	1 cut(s)	130
PspLI	CGTACG	1 cut(s)	8
PspN4I	GGNNCC	3 cut(s)	48, 90, 125
PspPI	GGNCC	3 cut(s)	4, 88, 244
PstI	CTGCAG	1 cut(s)	282
RsaI	GTAC	3 cut(s)	10, 125, 164
RsaNI	GTAC	3 cut(s)	9, 124, 163
SalI	GTCGAC	1 cut(s)	31
SapI	GCTCTTC	1 cut(s)	164
SaqAI	TTAA	1 cut(s)	409
SatI	GCNGC	5 cut(s)	75, 116, 182, 278, 288
Sau96I	GGNCC	3 cut(s)	4, 88, 244
ScrFI	CCNGG	2 cut(s)	79, 132
SduI	GDGCHC	1 cut(s)	176
SetI	ASST	6 cut(s)	125, 183, 198, 249, 303, 381
SfcI	CTRYAG	1 cut(s)	278
SinI	GGWCC	1 cut(s)	244
SseBI	AGGCCT	1 cut(s)	296
SsiI	CCGC	5 cut(s)	116, 127, 266, 287, 290
SspMI	CTAG	1 cut(s)	384
StuI	AGGCCT	1 cut(s)	296
StyD4I	CCNGG	2 cut(s)	77, 130
StyI	CCWWGG	1 cut(s)	366
TaaI	ACNGT	1 cut(s)	139
TaqI	TCGA	1 cut(s)	32
TauI	GCSGC	2 cut(s)	118, 290
TfiI	GAWTC	1 cut(s)	390
Tru1I	TTAA	1 cut(s)	409
Tru9I	TTAA	1 cut(s)	409
TseI	GCWGC	3 cut(s)	74, 181, 277
TspDTI	ATGAA	1 cut(s)	329
TspGWI	ACGGA	4 cut(s)	137, 189, 191, 257
VpaK11BI	GGWCC	1 cut(s)	244
XmiI	GTMKAC	1 cut(s)	32
XspI	CTAG	1 cut(s)	384

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.