Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0001010

Physical Location & Seq

Genomic Coordinates Forward (+)

7394857 .. 7395267

Gene Structure 411 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000011180

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

ATGGCTCGTACGAAGCAGACTGCTCGCAAATCCACAGGCGGCAAAGCTCCGAGGAAGCAACTCGCCACCAAGGCTGCTCGGAAGTCAGCTCCGACCACCGGCGGAGTCAAGAAGCCCCATCGCTACCGCCCCGGAACCGTCGCCCTCCGCGAAATCCGAAAGTACCAGAAGAGCACTGAGCTTTTGATCCGCAAGCTACCTTTCCAGCGCCTCGTTCGTGAAATCGCCCAGGATTTCAAGACGGACCTCAGGTTCCAGAGCCATGCTGTTCTTGCTCTTCAGGAAGCTGCTGAGGCTTACTTGGTGGGTCTGTTTGAGGACACCAACCTGTGCGCTATTCATGCCAAGAGGGTCACCATCATGCCCAAGGACATTCAACTAGCCCGGAGGATTCGCGGCGAACGTGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000785 GO:0000786 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006323 GO:0006325 GO:0006333 GO:0006334 GO:0006996 GO:0008150 GO:0009987 GO:0016043 GO:0022607 GO:0031490 GO:0031491 GO:0031492 GO:0031497 GO:0032991 GO:0032993 GO:0034622 GO:0034728 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0044815 GO:0044877 GO:0051276 GO:0065003 GO:0065004 GO:0071103 GO:0071824 GO:0071840 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko05034 ko05202 ko05322 map05034 map05202 map05322

Pfam Domains

Protein Families

Histone

Protein Analysis

137

Amino Acids

15.41

Weight (kDa)

11.15

Isoelectric Point (pI)

38.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Histone	PF00125	44 - 131	1e-38	Core histone H2A/H2B/H3/H4 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0001010)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G40030 AT4G40030 AT4G40030 AT4G40040 AT4G40040 AT4G40040 AT5G10980
fragaria_vesca	FvH4_1g20270 FvH4_1g28601 FvH4_1g29790 FvH4_5g36680
malus_domestica	MD01G1035300.v1.1 MD15G1320600.v1.1 MD15G1373700.v1.1
prunus_persica	Prupe.1G369600_v2.0.a1 Prupe.1G522300_v2.0.a1 Prupe.1G522300_v2.0.a1 Prupe.6G192700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0112411 RchiOBHm_Chr3g0495821 RchiOBHm_Chr6g0302291 RchiOBHm_Chr6g0302361 RchiOBHm_Chr7g0242651
rosa_laevigata	RLG00000011180 RLG00000017978 RLG00000022586 RLG00000022760 RLG00000022761
rosa_multiflora	Rmu_sc0003633.1_g000017 Rmu_ssc0000254.1_g000002
rosa_roxburghii	Rroxscaffold_2G00131460 Rroxscaffold_3G00222610 Rroxscaffold_6G00392220
rosa_rugosa	Rorug03G0254300 Rorug03G0276700 Rorug06G0313800 Rorug07G0315900 Rorug07G0316000
rosa_samantha	Rh2AG233800 Rh2BG247000 Rh2CG238100 Rh2DG241300 Rh3AG304900 Rh3AG324000 Rh3BG340700 Rh3BG340800 Rh3BG360000 Rh3DG339900 Rh3DG359400 Rh6AG426500 Rh6BG476000 Rh6BG476100 Rh6DG425900 Rh6DG426000 Rh7AG471000 Rh7BG441300
rosa_wichuraiana	Rw0G005470 Rw2G018090 Rw3G026860 Rw3G028330 Rw7G039260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	150, 396
AciI	CCGC	6 cut(s)	39, 102, 127, 148, 190, 396
AclWI	GGATC	1 cut(s)	181
AcuI	CTGAAG	1 cut(s)	263
AfaI	GTAC	2 cut(s)	10, 164
AfiI	CCNNNNNNNGG	1 cut(s)	98
AgsI	TTSAA	2 cut(s)	238, 377
AjnI	CCWGG	1 cut(s)	228
AloI	GAACNNNNNNTCC	2 cut(s)	236, 268
AluBI	AGCT	5 cut(s)	47, 89, 181, 196, 287
AluI	AGCT	5 cut(s)	47, 89, 181, 196, 287
Alw21I	GWGCWC	1 cut(s)	176
AlwI	GGATC	1 cut(s)	181
ApeKI	GCWGC	2 cut(s)	74, 287
AspLEI	GCGC	2 cut(s)	210, 335
AspS9I	GGNCC	1 cut(s)	244
AsuC2I	CCSGG	2 cut(s)	132, 385
AsuHPI	GGTGA	1 cut(s)	346
AvaII	GGWCC	1 cut(s)	244
AxyI	CCTNAGG	1 cut(s)	248
Bbv12I	GWGCWC	1 cut(s)	176
BbvCI	CCTCAGC	1 cut(s)	291
BbvI	GCAGC	2 cut(s)	61, 274
BccI	CCATC	2 cut(s)	126, 365
BcgI	CGANNNNNNTGC	2 cut(s)	5, 39
BciT130I	CCWGG	1 cut(s)	230
BcnI	CCSGG	2 cut(s)	132, 385
BfaI	CTAG	1 cut(s)	380
BfoI	RGCGCY	1 cut(s)	211
BglI	GCCNNNNNGGC	1 cut(s)	71
BisI	GCNGC	4 cut(s)	40, 75, 288, 397
BlsI	GCNGC	4 cut(s)	41, 76, 289, 398
Bme1390I	CCNGG	3 cut(s)	132, 230, 385
Bme18I	GGWCC	1 cut(s)	244
BmgT120I	GGNCC	1 cut(s)	244
BmiI	GGNNCC	2 cut(s)	136, 254
BmrFI	CCNGG	3 cut(s)	132, 230, 385
Bpu10I	CCTNAGC	1 cut(s)	291
BpuMI	CCSGG	2 cut(s)	132, 385
BsaJI	CCNNGG	5 cut(s)	50, 69, 130, 228, 366
Bsc4I	CCNNNNNNNGG	1 cut(s)	98
Bse118I	RCCGGY	1 cut(s)	98
Bse21I	CCTNAGG	1 cut(s)	248
BseBI	CCWGG	1 cut(s)	230
BseDI	CCNNGG	5 cut(s)	50, 69, 130, 228, 366
BseLI	CCNNNNNNNGG	1 cut(s)	98
BseMII	CTCAG	3 cut(s)	168, 262, 282
BseXI	GCAGC	2 cut(s)	61, 274
Bsh1236I	CGCG	2 cut(s)	150, 396
BsiHKAI	GWGCWC	1 cut(s)	176
BsiSI	CCGG	3 cut(s)	99, 132, 385
BsiWI	CGTACG	1 cut(s)	8
BslI	CCNNNNNNNGG	1 cut(s)	98
Bsp1286I	GDGCHC	1 cut(s)	176
Bsp143I	GATC	1 cut(s)	186
BspACI	CCGC	6 cut(s)	39, 102, 127, 148, 190, 396
BspCNI	CTCAG	3 cut(s)	169, 261, 283
BspFNI	CGCG	2 cut(s)	150, 396
BspLI	GGNNCC	2 cut(s)	136, 254
BspPI	GGATC	1 cut(s)	181
BspQI	GCTCTTC	2 cut(s)	164, 282
BsrFI	RCCGGY	1 cut(s)	98
BssAI	RCCGGY	1 cut(s)	98
BssECI	CCNNGG	5 cut(s)	50, 69, 130, 228, 366
BssMI	GATC	1 cut(s)	186
BssT1I	CCWWGG	2 cut(s)	69, 366
Bst2UI	CCWGG	1 cut(s)	230
Bst4CI	ACNGT	1 cut(s)	139
Bst6I	CTCTTC	2 cut(s)	164, 282
BstC8I	GCNNGC	2 cut(s)	25, 194
BstDEI	CTNAG	3 cut(s)	177, 248, 291
BstEII	GGTNACC	1 cut(s)	352
BstFNI	CGCG	2 cut(s)	150, 396
BstH2I	RGCGCY	1 cut(s)	211
BstHHI	GCGC	2 cut(s)	210, 335
BstKTI	GATC	1 cut(s)	189
BstMBI	GATC	1 cut(s)	186
BstMWI	GCNNNNNNNGC	4 cut(s)	71, 272, 293, 341
BstNI	CCWGG	1 cut(s)	230
BstPI	GGTNACC	1 cut(s)	352
BstSCI	CCNGG	3 cut(s)	130, 228, 383
BstUI	CGCG	2 cut(s)	150, 396
BstV1I	GCAGC	2 cut(s)	61, 274
Bsu36I	CCTNAGG	1 cut(s)	248
BtgZI	GCGATG	1 cut(s)	104
BtsIMutI	CAGTG	1 cut(s)	174
Cac8I	GCNNGC	2 cut(s)	25, 194
CfoI	GCGC	2 cut(s)	210, 335
Cfr10I	RCCGGY	1 cut(s)	98
Cfr13I	GGNCC	1 cut(s)	244
Csp6I	GTAC	2 cut(s)	9, 163
CviAII	CATG	3 cut(s)	263, 341, 361
CviQI	GTAC	2 cut(s)	9, 163
DdeI	CTNAG	3 cut(s)	177, 248, 291
DpnI	GATC	1 cut(s)	188
DpnII	GATC	1 cut(s)	186
Eam1104I	CTCTTC	2 cut(s)	164, 282
EarI	CTCTTC	2 cut(s)	164, 282
EciI	GGCGGA	1 cut(s)	117
Eco130I	CCWWGG	2 cut(s)	69, 366
Eco47I	GGWCC	1 cut(s)	244
Eco57I	CTGAAG	1 cut(s)	263
Eco81I	CCTNAGG	1 cut(s)	248
Eco91I	GGTNACC	1 cut(s)	352
EcoO65I	GGTNACC	1 cut(s)	352
EcoRII	CCWGG	1 cut(s)	228
EcoT14I	CCWWGG	2 cut(s)	69, 366
ErhI	CCWWGG	2 cut(s)	69, 366
FaeI	CATG	3 cut(s)	266, 344, 364
FaiI	YATR	3 cut(s)	264, 342, 362
FatI	CATG	3 cut(s)	262, 340, 360
Fnu4HI	GCNGC	4 cut(s)	40, 75, 288, 397
Fsp4HI	GCNGC	4 cut(s)	40, 75, 288, 397
FspBI	CTAG	1 cut(s)	380
GlaI	GCGC	2 cut(s)	209, 334
GluI	GCNGC	4 cut(s)	40, 75, 288, 397
HaeII	RGCGCY	1 cut(s)	211
HapII	CCGG	3 cut(s)	99, 132, 385
HhaI	GCGC	2 cut(s)	210, 335
Hin1II	CATG	3 cut(s)	266, 344, 364
Hin6I	GCGC	2 cut(s)	208, 333
HinP1I	GCGC	2 cut(s)	208, 333
HinfI	GANTC	2 cut(s)	105, 391
HpaII	CCGG	3 cut(s)	99, 132, 385
HphI	GGTGA	1 cut(s)	346
Hpy188I	TCNGA	4 cut(s)	51, 81, 93, 158
Hpy188III	TCNNGA	5 cut(s)	109, 218, 238, 256, 281
Hpy99I	CGWCG	1 cut(s)	143
HpyCH4III	ACNGT	1 cut(s)	139
HpyCH4IV	ACGT	1 cut(s)	403
HpyF10VI	GCNNNNNNNGC	4 cut(s)	71, 272, 293, 341
HpyF3I	CTNAG	3 cut(s)	177, 248, 291
HpySE526I	ACGT	1 cut(s)	403
Hsp92II	CATG	3 cut(s)	266, 344, 364
HspAI	GCGC	2 cut(s)	208, 333
Kzo9I	GATC	1 cut(s)	186
LguI	GCTCTTC	2 cut(s)	164, 282
LmnI	GCTCC	2 cut(s)	52, 94
Lsp1109I	GCAGC	2 cut(s)	61, 274
MaeI	CTAG	1 cut(s)	380
MaeII	ACGT	1 cut(s)	403
MaeIII	GTNAC	1 cut(s)	352
MalI	GATC	1 cut(s)	188
MboI	GATC	1 cut(s)	186
MboII	GAAGA	2 cut(s)	181, 269
MhlI	GDGCHC	1 cut(s)	176
MlyI	GAGTC	1 cut(s)	114
MmeI	TCCRAC	1 cut(s)	116
MnlI	CCTC	8 cut(s)	45, 155, 221, 257, 286, 310, 342, 381
MseI	TTAA	1 cut(s)	409
MslI	CAYNNNNRTG	1 cut(s)	359
MspI	CCGG	3 cut(s)	99, 132, 385
MspR9I	CCNGG	3 cut(s)	132, 230, 385
MvaI	CCWGG	1 cut(s)	230
MvnI	CGCG	2 cut(s)	150, 396
MwoI	GCNNNNNNNGC	4 cut(s)	71, 272, 293, 341
NciI	CCSGG	2 cut(s)	132, 385
NdeII	GATC	1 cut(s)	186
NlaIII	CATG	3 cut(s)	266, 344, 364
NlaIV	GGNNCC	2 cut(s)	136, 254
NmuCI	GTSAC	1 cut(s)	352
PciSI	GCTCTTC	2 cut(s)	164, 282
PcsI	WCGNNNNNNNCGW	2 cut(s)	147, 400
PfeI	GAWTC	1 cut(s)	391
Pfl23II	CGTACG	1 cut(s)	8
PkrI	GCNGC	4 cut(s)	41, 76, 289, 398
PleI	GAGTC	1 cut(s)	113
PpsI	GAGTC	1 cut(s)	113
Psp6I	CCWGG	1 cut(s)	228
PspEI	GGTNACC	1 cut(s)	352
PspGI	CCWGG	1 cut(s)	228
PspLI	CGTACG	1 cut(s)	8
PspN4I	GGNNCC	2 cut(s)	136, 254
PspPI	GGNCC	1 cut(s)	244
RsaI	GTAC	2 cut(s)	10, 164
RsaNI	GTAC	2 cut(s)	9, 163
RseI	CAYNNNNRTG	1 cut(s)	359
SapI	GCTCTTC	2 cut(s)	164, 282
SaqAI	TTAA	1 cut(s)	409
SatI	GCNGC	4 cut(s)	40, 75, 288, 397
Sau3AI	GATC	1 cut(s)	186
Sau96I	GGNCC	1 cut(s)	244
SchI	GAGTC	1 cut(s)	114
ScrFI	CCNGG	3 cut(s)	132, 230, 385
SduI	GDGCHC	1 cut(s)	176
SgrAI	CRCCGGYG	1 cut(s)	98
SinI	GGWCC	1 cut(s)	244
SmiMI	CAYNNNNRTG	1 cut(s)	359
SsiI	CCGC	6 cut(s)	39, 102, 127, 148, 190, 396
SspMI	CTAG	1 cut(s)	380
StyD4I	CCNGG	3 cut(s)	130, 228, 383
StyI	CCWWGG	2 cut(s)	69, 366
TaaI	ACNGT	1 cut(s)	139
TaiI	ACGT	1 cut(s)	406
TauI	GCSGC	2 cut(s)	42, 399
TfiI	GAWTC	1 cut(s)	391
Tru1I	TTAA	1 cut(s)	409
Tru9I	TTAA	1 cut(s)	409
TscAI	CASTG	1 cut(s)	181
TseFI	GTSAC	1 cut(s)	352
TseI	GCWGC	2 cut(s)	74, 287
Tsp45I	GTSAC	1 cut(s)	352
TspDTI	ATGAA	1 cut(s)	329
TspGWI	ACGGA	1 cut(s)	257
TspRI	CASTG	1 cut(s)	181
VpaK11BI	GGWCC	1 cut(s)	244
XspI	CTAG	1 cut(s)	380

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.