Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0001010

Physical Location & Seq

Genomic Coordinates Reverse (-)

42798116 .. 42799567

Gene Structure 1452 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G522300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

ATGGCCCGTACGAAGCAGACTGCTCGCAAGTCCACCGGAGGCAAGGCTCCAAGGAAGCAACTTGCCACCAAGGCTGCTCGCAAATCAGCCCCAACCACCGGAGGCGTGAAGAAGCCTCACAGATACCGCCCTGGAACTGTTGCCCTCCGTGAAATCCGCAAGTACCAGAAAAGCACAGAGCTGCTGATCAGGAAGCTCCCATTCCAGAGGTTGGTTCGTGAAATTGCCCAGGACTTCAAAACCGATTTGCGTTTCCAGAGCCATGCTGTTTTGGCCCTGCAGGAGGCTGCCGAGGCATACCTTGTTGGGTTGTTTGAGGACACAAACCTCTGTGCCATTCATGCCAAGCGCGTTACGATCATGCCCAAGGACATCCAACTTGCGAGGAGAATTCGAGGCGAGAGGGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000785 GO:0000786 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006323 GO:0006325 GO:0006333 GO:0006334 GO:0006996 GO:0008150 GO:0009987 GO:0016043 GO:0022607 GO:0031490 GO:0031491 GO:0031492 GO:0031497 GO:0032991 GO:0032993 GO:0034622 GO:0034728 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0044815 GO:0044877 GO:0051276 GO:0065003 GO:0065004 GO:0071103 GO:0071824 GO:0071840 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko05034 ko05202 ko05322 map05034 map05202 map05322

Pfam Domains

Protein Families

Histone

Protein Analysis

137

Amino Acids

15.41

Weight (kDa)

11.15

Isoelectric Point (pI)

38.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001010)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G40030 AT4G40030 AT4G40030 AT4G40040 AT4G40040 AT4G40040 AT5G10980
fragaria_vesca	FvH4_1g20270 FvH4_1g28601 FvH4_1g29790 FvH4_5g36680
malus_domestica	MD01G1035300.v1.1 MD15G1320600.v1.1 MD15G1373700.v1.1
prunus_persica	Prupe.1G369600_v2.0.a1 Prupe.1G522300_v2.0.a1 Prupe.1G522300_v2.0.a1 Prupe.6G192700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0112411 RchiOBHm_Chr3g0495821 RchiOBHm_Chr6g0302291 RchiOBHm_Chr6g0302361 RchiOBHm_Chr7g0242651
rosa_laevigata	RLG00000011180 RLG00000017978 RLG00000022586 RLG00000022760 RLG00000022761
rosa_multiflora	Rmu_sc0003633.1_g000017 Rmu_ssc0000254.1_g000002
rosa_roxburghii	Rroxscaffold_2G00131460 Rroxscaffold_3G00222610 Rroxscaffold_6G00392220
rosa_rugosa	Rorug03G0254300 Rorug03G0276700 Rorug06G0313800 Rorug07G0315900 Rorug07G0316000
rosa_samantha	Rh2AG233800 Rh2BG247000 Rh2CG238100 Rh2DG241300 Rh3AG304900 Rh3AG324000 Rh3BG340700 Rh3BG340800 Rh3BG360000 Rh3DG339900 Rh3DG359400 Rh6AG426500 Rh6BG476000 Rh6BG476100 Rh6DG425900 Rh6DG426000 Rh7AG471000 Rh7BG441300
rosa_wichuraiana	Rw0G005470 Rw2G018090 Rw3G026860 Rw3G028330 Rw7G039260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	211
AccII	CGCG	1 cut(s)	351
AciI	CCGC	2 cut(s)	127, 157
AcsI	RAATTY	1 cut(s)	390
AfaI	GTAC	2 cut(s)	10, 164
AfiI	CCNNNNNNNGG	3 cut(s)	98, 211, 283
AgsI	TTSAA	1 cut(s)	238
AjnI	CCWGG	2 cut(s)	130, 228
AluBI	AGCT	2 cut(s)	181, 196
AluI	AGCT	2 cut(s)	181, 196
AoxI	GGCC	2 cut(s)	3, 273
ApeKI	GCWGC	3 cut(s)	74, 181, 287
ApoI	RAATTY	1 cut(s)	390
AspLEI	GCGC	1 cut(s)	351
AspS9I	GGNCC	2 cut(s)	4, 274
BbvI	GCAGC	3 cut(s)	61, 168, 274
BcgI	CGANNNNNNTGC	2 cut(s)	5, 39
BciT130I	CCWGG	2 cut(s)	132, 230
BclI	TGATCA	1 cut(s)	186
BfmI	CTRYAG	1 cut(s)	278
BglI	GCCNNNNNGGC	1 cut(s)	71
BisI	GCNGC	3 cut(s)	75, 182, 288
BlsI	GCNGC	3 cut(s)	76, 183, 289
Bme1390I	CCNGG	2 cut(s)	132, 230
BmgT120I	GGNCC	2 cut(s)	4, 274
BmiI	GGNNCC	1 cut(s)	48
BmrFI	CCNGG	2 cut(s)	132, 230
BsaJI	CCNNGG	6 cut(s)	50, 69, 130, 228, 291, 366
BsaWI	WCCGGW	2 cut(s)	35, 98
Bsc4I	CCNNNNNNNGG	3 cut(s)	98, 211, 283
BseBI	CCWGG	2 cut(s)	132, 230
BseDI	CCNNGG	6 cut(s)	50, 69, 130, 228, 291, 366
BseGI	GGATG	1 cut(s)	372
BseLI	CCNNNNNNNGG	3 cut(s)	98, 211, 283
BseRI	GAGGAG	1 cut(s)	400
BseXI	GCAGC	3 cut(s)	61, 168, 274
Bsh1236I	CGCG	1 cut(s)	351
BshFI	GGCC	2 cut(s)	5, 275
BsiSI	CCGG	2 cut(s)	36, 99
BsiWI	CGTACG	1 cut(s)	8
BslI	CCNNNNNNNGG	3 cut(s)	98, 211, 283
BsnI	GGCC	2 cut(s)	5, 275
Bsp143I	GATC	2 cut(s)	186, 357
BspACI	CCGC	2 cut(s)	127, 157
BspANI	GGCC	2 cut(s)	5, 275
BspFNI	CGCG	1 cut(s)	351
BspLI	GGNNCC	1 cut(s)	48
BspMAI	CTGCAG	1 cut(s)	282
BssECI	CCNNGG	6 cut(s)	50, 69, 130, 228, 291, 366
BssMI	GATC	2 cut(s)	186, 357
BssT1I	CCWWGG	3 cut(s)	50, 69, 366
Bst2UI	CCWGG	2 cut(s)	132, 230
Bst4CI	ACNGT	1 cut(s)	139
BstC8I	GCNNGC	2 cut(s)	25, 79
BstENI	CCTNNNNNAGG	1 cut(s)	281
BstF5I	GGATG	1 cut(s)	372
BstFNI	CGCG	1 cut(s)	351
BstHHI	GCGC	1 cut(s)	351
BstKTI	GATC	2 cut(s)	189, 360
BstMBI	GATC	2 cut(s)	186, 357
BstMWI	GCNNNNNNNGC	4 cut(s)	71, 272, 293, 341
BstNI	CCWGG	2 cut(s)	132, 230
BstSCI	CCNGG	2 cut(s)	130, 228
BstSFI	CTRYAG	1 cut(s)	278
BstUI	CGCG	1 cut(s)	351
BstV1I	GCAGC	3 cut(s)	61, 168, 274
BsuRI	GGCC	2 cut(s)	5, 275
BtsCI	GGATG	1 cut(s)	372
Cac8I	GCNNGC	2 cut(s)	25, 79
CfoI	GCGC	1 cut(s)	351
Cfr13I	GGNCC	2 cut(s)	4, 274
Csp6I	GTAC	2 cut(s)	9, 163
CviAII	CATG	3 cut(s)	263, 341, 361
CviQI	GTAC	2 cut(s)	9, 163
DpnI	GATC	2 cut(s)	188, 359
DpnII	GATC	2 cut(s)	186, 357
Eco130I	CCWWGG	3 cut(s)	50, 69, 366
EcoNI	CCTNNNNNAGG	1 cut(s)	281
EcoRI	GAATTC	1 cut(s)	390
EcoRII	CCWGG	2 cut(s)	130, 228
EcoT14I	CCWWGG	3 cut(s)	50, 69, 366
ErhI	CCWWGG	3 cut(s)	50, 69, 366
FaeI	CATG	3 cut(s)	266, 344, 364
FaiI	YATR	4 cut(s)	264, 298, 342, 362
FatI	CATG	3 cut(s)	262, 340, 360
FbaI	TGATCA	1 cut(s)	186
Fnu4HI	GCNGC	3 cut(s)	75, 182, 288
FokI	GGATG	1 cut(s)	359
Fsp4HI	GCNGC	3 cut(s)	75, 182, 288
GlaI	GCGC	1 cut(s)	350
GluI	GCNGC	3 cut(s)	75, 182, 288
HaeIII	GGCC	2 cut(s)	5, 275
HapII	CCGG	2 cut(s)	36, 99
HhaI	GCGC	1 cut(s)	351
Hin1II	CATG	3 cut(s)	266, 344, 364
Hin6I	GCGC	1 cut(s)	349
HinP1I	GCGC	1 cut(s)	349
HpaII	CCGG	2 cut(s)	36, 99
Hpy166II	GTNNAC	1 cut(s)	33
Hpy188III	TCNNGA	4 cut(s)	190, 205, 218, 256
Hpy8I	GTNNAC	1 cut(s)	33
HpyCH4III	ACNGT	1 cut(s)	139
HpyCH4V	TGCA	1 cut(s)	280
HpyF10VI	GCNNNNNNNGC	4 cut(s)	71, 272, 293, 341
Hsp92II	CATG	3 cut(s)	266, 344, 364
HspAI	GCGC	1 cut(s)	349
Ksp22I	TGATCA	1 cut(s)	186
Kzo9I	GATC	2 cut(s)	186, 357
LmnI	GCTCC	2 cut(s)	52, 201
Lsp1109I	GCAGC	3 cut(s)	61, 168, 274
MaeIII	GTNAC	1 cut(s)	352
MalI	GATC	2 cut(s)	188, 359
MboI	GATC	2 cut(s)	186, 357
MboII	GAAGA	1 cut(s)	121
MluCI	AATT	2 cut(s)	222, 390
MmeI	TCCRAC	1 cut(s)	400
MseI	TTAA	1 cut(s)	409
MspI	CCGG	2 cut(s)	36, 99
MspR9I	CCNGG	2 cut(s)	132, 230
MvaI	CCWGG	2 cut(s)	132, 230
MvnI	CGCG	1 cut(s)	351
MwoI	GCNNNNNNNGC	4 cut(s)	71, 272, 293, 341
NdeII	GATC	2 cut(s)	186, 357
NlaIII	CATG	3 cut(s)	266, 344, 364
NlaIV	GGNNCC	1 cut(s)	48
NmeAIII	GCCGAG	1 cut(s)	316
Pfl23II	CGTACG	1 cut(s)	8
PflMI	CCANNNNNTGG	1 cut(s)	211
PkrI	GCNGC	3 cut(s)	76, 183, 289
Psp6I	CCWGG	2 cut(s)	130, 228
PspGI	CCWGG	2 cut(s)	130, 228
PspLI	CGTACG	1 cut(s)	8
PspN4I	GGNNCC	1 cut(s)	48
PspPI	GGNCC	2 cut(s)	4, 274
PstI	CTGCAG	1 cut(s)	282
RsaI	GTAC	2 cut(s)	10, 164
RsaNI	GTAC	2 cut(s)	9, 163
SaqAI	TTAA	1 cut(s)	409
SatI	GCNGC	3 cut(s)	75, 182, 288
Sau3AI	GATC	2 cut(s)	186, 357
Sau96I	GGNCC	2 cut(s)	4, 274
SbfI	CCTGCAGG	1 cut(s)	282
ScrFI	CCNGG	2 cut(s)	132, 230
SdaI	CCTGCAGG	1 cut(s)	282
SetI	ASST	5 cut(s)	183, 198, 212, 303, 330
SfcI	CTRYAG	1 cut(s)	278
Sse8387I	CCTGCAGG	1 cut(s)	282
Sse9I	AATT	2 cut(s)	222, 390
SsiI	CCGC	2 cut(s)	127, 157
StyD4I	CCNGG	2 cut(s)	130, 228
StyI	CCWWGG	3 cut(s)	50, 69, 366
TaaI	ACNGT	1 cut(s)	139
TaqI	TCGA	1 cut(s)	394
TasI	AATT	2 cut(s)	222, 390
Tru1I	TTAA	1 cut(s)	409
Tru9I	TTAA	1 cut(s)	409
TseI	GCWGC	3 cut(s)	74, 181, 287
TspDTI	ATGAA	1 cut(s)	329
TspGWI	ACGGA	1 cut(s)	137
Van91I	CCANNNNNTGG	1 cut(s)	211
XagI	CCTNNNNNAGG	1 cut(s)	281
XapI	RAATTY	1 cut(s)	390

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.