Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0001010

Physical Location & Seq

Genomic Coordinates Forward (+)

33323352 .. 33324942

Gene Structure 1591 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1320600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

ATGATGGCCCGTACCAAGCAAACTGCTCGTAAGTCTACTGGAGGAAAGGCTCCCAGGAAGCAACTTGCTACCAAGGCTGCTCGTAAGTCTGCACCAACCACTGGAGGAGTCAAGAAGCCCCACAGATACCGCCCTGGTACTGTCGCTCTTCGTGAAATCCGCAAGTACCAGAAGAGTACTGAGCTCTTGATCAGGAAGTTGCCATTCCAGAGGCTTGTTCGTGAAATAGCCCAGGATTTCAAGACTGATCTGCGTTTCCAGAGCCATGCGGTGTTGGCACTGCAGGAGGCTGCTGAGGCCTACCTTGTGGGTCTGTTTGAGGACACCAACCTTTGCGCCATCCATGCCAAGCGGGTTACCATCATGCCGAAGGATATCCAGCTTGCCAGGAGGATCAGGGGTGAGCGTGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko05034 ko05202 ko05322 map05034 map05202 map05322

Pfam Domains

Protein Families

Histone

Protein Analysis

138

Amino Acids

15.54

Weight (kDa)

11.15

Isoelectric Point (pI)

37.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Histone	PF00125	45 - 132	1e-38	Core histone H2A/H2B/H3/H4 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001010)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G40030 AT4G40030 AT4G40030 AT4G40040 AT4G40040 AT4G40040 AT5G10980
fragaria_vesca	FvH4_1g20270 FvH4_1g28601 FvH4_1g29790 FvH4_5g36680
malus_domestica	MD01G1035300.v1.1 MD15G1320600.v1.1 MD15G1373700.v1.1
prunus_persica	Prupe.1G369600_v2.0.a1 Prupe.1G522300_v2.0.a1 Prupe.1G522300_v2.0.a1 Prupe.6G192700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0112411 RchiOBHm_Chr3g0495821 RchiOBHm_Chr6g0302291 RchiOBHm_Chr6g0302361 RchiOBHm_Chr7g0242651
rosa_laevigata	RLG00000011180 RLG00000017978 RLG00000022586 RLG00000022760 RLG00000022761
rosa_multiflora	Rmu_sc0003633.1_g000017 Rmu_ssc0000254.1_g000002
rosa_roxburghii	Rroxscaffold_2G00131460 Rroxscaffold_3G00222610 Rroxscaffold_6G00392220
rosa_rugosa	Rorug03G0254300 Rorug03G0276700 Rorug06G0313800 Rorug07G0315900 Rorug07G0316000
rosa_samantha	Rh2AG233800 Rh2BG247000 Rh2CG238100 Rh2DG241300 Rh3AG304900 Rh3AG324000 Rh3BG340700 Rh3BG340800 Rh3BG360000 Rh3DG339900 Rh3DG359400 Rh6AG426500 Rh6BG476000 Rh6BG476100 Rh6DG425900 Rh6DG426000 Rh7AG471000 Rh7BG441300
rosa_wichuraiana	Rw0G005470 Rw2G018090 Rw3G026860 Rw3G028330 Rw7G039260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	101
AccI	GTMKAC	1 cut(s)	35
AciI	CCGC	4 cut(s)	130, 160, 269, 352
AclWI	GGATC	1 cut(s)	401
AfaI	GTAC	4 cut(s)	13, 139, 167, 178
AfiI	CCNNNNNNNGG	1 cut(s)	101
AgsI	TTSAA	1 cut(s)	241
AjnI	CCWGG	4 cut(s)	53, 133, 231, 386
AluBI	AGCT	2 cut(s)	184, 382
AluI	AGCT	2 cut(s)	184, 382
Alw21I	GWGCWC	1 cut(s)	186
AlwI	GGATC	1 cut(s)	401
AoxI	GGCC	2 cut(s)	6, 297
ApeKI	GCWGC	2 cut(s)	77, 290
AspLEI	GCGC	1 cut(s)	338
AspS9I	GGNCC	1 cut(s)	7
AsuHPI	GGTGA	1 cut(s)	413
BanII	GRGCYC	1 cut(s)	186
Bbv12I	GWGCWC	1 cut(s)	186
BbvCI	CCTCAGC	1 cut(s)	294
BbvI	GCAGC	2 cut(s)	64, 277
BccI	CCATC	2 cut(s)	347, 368
BcgI	CGANNNNNNTGC	2 cut(s)	8, 42
BciT130I	CCWGG	4 cut(s)	55, 135, 233, 388
BclI	TGATCA	1 cut(s)	189
BfmI	CTRYAG	1 cut(s)	281
BisI	GCNGC	2 cut(s)	78, 291
BlsI	GCNGC	2 cut(s)	79, 292
BmcAI	AGTACT	1 cut(s)	178
Bme1390I	CCNGG	4 cut(s)	55, 135, 233, 388
BmgT120I	GGNCC	1 cut(s)	7
BmiI	GGNNCC	1 cut(s)	51
BmrFI	CCNGG	4 cut(s)	55, 135, 233, 388
BpmI	CTGGAG	2 cut(s)	60, 123
Bpu10I	CCTNAGC	1 cut(s)	294
BsaJI	CCNNGG	4 cut(s)	53, 72, 133, 231
Bsc4I	CCNNNNNNNGG	1 cut(s)	101
Bse1I	ACTGG	2 cut(s)	43, 106
BseBI	CCWGG	4 cut(s)	55, 135, 233, 388
BseDI	CCNNGG	4 cut(s)	53, 72, 133, 231
BseGI	GGATG	1 cut(s)	339
BseLI	CCNNNNNNNGG	1 cut(s)	101
BseMII	CTCAG	2 cut(s)	171, 285
BseNI	ACTGG	2 cut(s)	43, 106
BseRI	GAGGAG	1 cut(s)	120
BseXI	GCAGC	2 cut(s)	64, 277
BsgI	GTGCAG	1 cut(s)	75
BshFI	GGCC	2 cut(s)	8, 299
BsiHKAI	GWGCWC	1 cut(s)	186
BslI	CCNNNNNNNGG	1 cut(s)	101
BsnI	GGCC	2 cut(s)	8, 299
Bsp1286I	GDGCHC	1 cut(s)	186
Bsp143I	GATC	3 cut(s)	189, 247, 393
BspACI	CCGC	4 cut(s)	130, 160, 269, 352
BspANI	GGCC	2 cut(s)	8, 299
BspCNI	CTCAG	2 cut(s)	172, 286
BspLI	GGNNCC	1 cut(s)	51
BspMAI	CTGCAG	1 cut(s)	285
BspPI	GGATC	1 cut(s)	401
BspQI	GCTCTTC	1 cut(s)	153
BsrI	ACTGG	2 cut(s)	43, 106
BssECI	CCNNGG	4 cut(s)	53, 72, 133, 231
BssMI	GATC	3 cut(s)	189, 247, 393
BssT1I	CCWWGG	1 cut(s)	72
Bst2UI	CCWGG	4 cut(s)	55, 135, 233, 388
Bst4CI	ACNGT	1 cut(s)	142
Bst6I	CTCTTC	2 cut(s)	153, 167
BstC8I	GCNNGC	2 cut(s)	384, 408
BstDEI	CTNAG	2 cut(s)	180, 294
BstEII	GGTNACC	1 cut(s)	355
BstF5I	GGATG	1 cut(s)	339
BstHHI	GCGC	1 cut(s)	338
BstKTI	GATC	3 cut(s)	192, 250, 396
BstMBI	GATC	3 cut(s)	189, 247, 393
BstMWI	GCNNNNNNNGC	4 cut(s)	74, 275, 296, 344
BstNI	CCWGG	4 cut(s)	55, 135, 233, 388
BstPI	GGTNACC	1 cut(s)	355
BstSCI	CCNGG	4 cut(s)	53, 133, 231, 386
BstSFI	CTRYAG	1 cut(s)	281
BstV1I	GCAGC	2 cut(s)	64, 277
BsuRI	GGCC	2 cut(s)	8, 299
BtsCI	GGATG	1 cut(s)	339
BtsI	GCAGTG	1 cut(s)	278
BtsIMutI	CAGTG	2 cut(s)	99, 278
Cac8I	GCNNGC	2 cut(s)	384, 408
CfoI	GCGC	1 cut(s)	338
Cfr13I	GGNCC	1 cut(s)	7
Csp6I	GTAC	4 cut(s)	12, 138, 166, 177
CviAII	CATG	3 cut(s)	266, 344, 364
CviQI	GTAC	4 cut(s)	12, 138, 166, 177
DdeI	CTNAG	2 cut(s)	180, 294
DpnI	GATC	3 cut(s)	191, 249, 395
DpnII	GATC	3 cut(s)	189, 247, 393
Eam1104I	CTCTTC	2 cut(s)	153, 167
EarI	CTCTTC	2 cut(s)	153, 167
Ecl136II	GAGCTC	1 cut(s)	184
Eco130I	CCWWGG	1 cut(s)	72
Eco147I	AGGCCT	1 cut(s)	299
Eco24I	GRGCYC	1 cut(s)	186
Eco32I	GATATC	1 cut(s)	376
Eco53kI	GAGCTC	1 cut(s)	184
Eco91I	GGTNACC	1 cut(s)	355
EcoICRI	GAGCTC	1 cut(s)	184
EcoO65I	GGTNACC	1 cut(s)	355
EcoRII	CCWGG	4 cut(s)	53, 133, 231, 386
EcoRV	GATATC	1 cut(s)	376
EcoT14I	CCWWGG	1 cut(s)	72
EcoT38I	GRGCYC	1 cut(s)	186
ErhI	CCWWGG	1 cut(s)	72
FaeI	CATG	3 cut(s)	269, 347, 367
FaiI	YATR	3 cut(s)	267, 345, 365
FatI	CATG	3 cut(s)	265, 343, 363
FauI	CCCGC	1 cut(s)	345
FbaI	TGATCA	1 cut(s)	189
FblI	GTMKAC	1 cut(s)	35
Fnu4HI	GCNGC	2 cut(s)	78, 291
FokI	GGATG	1 cut(s)	326
FriOI	GRGCYC	1 cut(s)	186
Fsp4HI	GCNGC	2 cut(s)	78, 291
GlaI	GCGC	1 cut(s)	337
GluI	GCNGC	2 cut(s)	78, 291
GsuI	CTGGAG	2 cut(s)	60, 123
HaeIII	GGCC	2 cut(s)	8, 299
HhaI	GCGC	1 cut(s)	338
Hin1II	CATG	3 cut(s)	269, 347, 367
Hin6I	GCGC	1 cut(s)	336
HinP1I	GCGC	1 cut(s)	336
HinfI	GANTC	1 cut(s)	108
HphI	GGTGA	1 cut(s)	413
Hpy166II	GTNNAC	1 cut(s)	36
Hpy188III	TCNNGA	8 cut(s)	112, 152, 187, 193, 208, 221, 241, 259
Hpy8I	GTNNAC	1 cut(s)	36
HpyAV	CCTTC	1 cut(s)	364
HpyCH4III	ACNGT	1 cut(s)	142
HpyCH4V	TGCA	2 cut(s)	92, 283
HpyF10VI	GCNNNNNNNGC	4 cut(s)	74, 275, 296, 344
HpyF3I	CTNAG	2 cut(s)	180, 294
Hsp92II	CATG	3 cut(s)	269, 347, 367
HspAI	GCGC	1 cut(s)	336
Ksp22I	TGATCA	1 cut(s)	189
Kzo9I	GATC	3 cut(s)	189, 247, 393
LguI	GCTCTTC	1 cut(s)	153
LmnI	GCTCC	1 cut(s)	55
Lsp1109I	GCAGC	2 cut(s)	64, 277
MaeIII	GTNAC	1 cut(s)	355
MalI	GATC	3 cut(s)	191, 249, 395
MboI	GATC	3 cut(s)	189, 247, 393
MboII	GAAGA	2 cut(s)	140, 184
MhlI	GDGCHC	1 cut(s)	186
MlyI	GAGTC	1 cut(s)	117
MnlI	CCTC	7 cut(s)	35, 98, 204, 280, 289, 313, 384
MseI	TTAA	1 cut(s)	412
MspR9I	CCNGG	4 cut(s)	55, 135, 233, 388
MvaI	CCWGG	4 cut(s)	55, 135, 233, 388
MwoI	GCNNNNNNNGC	4 cut(s)	74, 275, 296, 344
NdeII	GATC	3 cut(s)	189, 247, 393
NlaIII	CATG	3 cut(s)	269, 347, 367
NlaIV	GGNNCC	1 cut(s)	51
PceI	AGGCCT	1 cut(s)	299
PciSI	GCTCTTC	1 cut(s)	153
PflMI	CCANNNNNTGG	1 cut(s)	101
PkrI	GCNGC	2 cut(s)	79, 292
PleI	GAGTC	1 cut(s)	116
PpsI	GAGTC	1 cut(s)	116
Psp124BI	GAGCTC	1 cut(s)	186
Psp6I	CCWGG	4 cut(s)	53, 133, 231, 386
PspEI	GGTNACC	1 cut(s)	355
PspGI	CCWGG	4 cut(s)	53, 133, 231, 386
PspN4I	GGNNCC	1 cut(s)	51
PspPI	GGNCC	1 cut(s)	7
PstI	CTGCAG	1 cut(s)	285
RsaI	GTAC	4 cut(s)	13, 139, 167, 178
RsaNI	GTAC	4 cut(s)	12, 138, 166, 177
SacI	GAGCTC	1 cut(s)	186
SapI	GCTCTTC	1 cut(s)	153
SaqAI	TTAA	1 cut(s)	412
SatI	GCNGC	2 cut(s)	78, 291
Sau3AI	GATC	3 cut(s)	189, 247, 393
Sau96I	GGNCC	1 cut(s)	7
ScaI	AGTACT	1 cut(s)	178
SchI	GAGTC	1 cut(s)	117
ScrFI	CCNGG	4 cut(s)	55, 135, 233, 388
SduI	GDGCHC	1 cut(s)	186
SetI	ASST	4 cut(s)	186, 306, 333, 384
SfcI	CTRYAG	1 cut(s)	281
SseBI	AGGCCT	1 cut(s)	299
SsiI	CCGC	4 cut(s)	130, 160, 269, 352
SstI	GAGCTC	1 cut(s)	186
StuI	AGGCCT	1 cut(s)	299
StyD4I	CCNGG	4 cut(s)	53, 133, 231, 386
StyI	CCWWGG	1 cut(s)	72
TaaI	ACNGT	1 cut(s)	142
TatI	WGTACW	1 cut(s)	176
Tru1I	TTAA	1 cut(s)	412
Tru9I	TTAA	1 cut(s)	412
TscAI	CASTG	2 cut(s)	106, 285
TseI	GCWGC	2 cut(s)	77, 290
TspRI	CASTG	2 cut(s)	106, 285
Van91I	CCANNNNNTGG	1 cut(s)	101
XmiI	GTMKAC	1 cut(s)	35
ZrmI	AGTACT	1 cut(s)	178

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.