Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0001010

Physical Location & Seq

Genomic Coordinates Reverse (-)

31979337 .. 31982073

Gene Structure 2737 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0316000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1197 bp

ATGGAATCCATGCCAGTAATTGCTGAAGCTGCCGCCTCCACCCCAGAAAACATCGCCACCGGCTCCAGTGAAGTCACCGGCTCCGACACCCCAAGAGAATGCATAGGCTCCGGCACCGCGAGCAAATGCACCGGCTTCGGCACCTCGAGGGAATACACTGGCTTCGGCACCCCGAGCAAATGCACCAGCTCCCCCACCCCCTATACCCTCTCTACCCCCGGTAAACCGCCTTCAAAACAGAATAATTCTTCAGAAGACAACAACCCTTTGTTTGGCTTGATCCTTCTACCTGCCGCTCTCGCTGCCACTGGTGCTGGCGCTGCCGGTGGTCTTAGTGGCACTGCCATATCTAGCTTAGAAGTTGCAGCTGCCGTTACAGCTATAGACGTCCTCCAAGAAATTTTAAAACATAAGAAAAATGAAACACCTCCCGATAAGCGTAATTGCACATGCTCGTCAGGTGGGAAGGAACCTCCTCCGGCTAGGACCTCCCCCGCTCCACCATCTCTAATCAAACCTTCGACTCCACCAGCTCAAGGAAGGTCACCACCTTCGCCACCTTTGAAAAAGGCACCACCATCTCCCCCACCTTTAAAAAAGGCACCACCACCACCACCTCCACCACCACCACCGGAGAAAGAAGAGGGAGATACACTAGCTCCCTCACCTCAAGATGACAACTTATTGGCTCTATCCCCTTTTATGGACGCACCCTTTCCTTCACCTCTGGCAAATGCACCCGCTCTTGTTGGTGGCGGTGGTGGATCCAAATCCAAAGCTGGAGCTGGAGGAACTATCCTTGGCAGTGATATTGGAAAAACCATCTCAGACATGGGTAGCCATAAGACTAGTGAAAATTTAAACACTAAGGTAACAACGCCTTATACGCATCAGTGCAGGTGCCCAAAATCTTCTATGACCTTCCCCATTCCATCATCTCCAATCAAACCCTCGACTCCACCAGCTCAAGGAAGGTCACCGCCTTTGTCACATTTGAAAAAGGCACCACCACCTCCCCCAGCTTCAAAAAAGGCACCACCACCACCTCCACCAGCTCCAGCACCTCAAGATGATGATGATGTGGCACTAGCTCCTGTTAGAACCAATCAGTATGATCCTTCAACATTTCTTCCATGTGGGACTTTAGTCCCACAAGTTCCAATCAAGATGACAATGCTCCTGTTGCAGATTGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000785 GO:0000786 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006323 GO:0006325 GO:0006333 GO:0006334 GO:0006996 GO:0008150 GO:0009987 GO:0016043 GO:0022607 GO:0031490 GO:0031491 GO:0031492 GO:0031497 GO:0032991 GO:0032993 GO:0034622 GO:0034728 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0044815 GO:0044877 GO:0051276 GO:0065003 GO:0065004 GO:0071103 GO:0071824 GO:0071840 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko05034 ko05202 ko05322 map05034 map05202 map05322

Pfam Domains

Protein Families

Histone

Protein Analysis

398

Amino Acids

40.4

Weight (kDa)

8.68

Isoelectric Point (pI)

75.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001010)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G40030 AT4G40030 AT4G40030 AT4G40040 AT4G40040 AT4G40040 AT5G10980
fragaria_vesca	FvH4_1g20270 FvH4_1g28601 FvH4_1g29790 FvH4_5g36680
malus_domestica	MD01G1035300.v1.1 MD15G1320600.v1.1 MD15G1373700.v1.1
prunus_persica	Prupe.1G369600_v2.0.a1 Prupe.1G522300_v2.0.a1 Prupe.1G522300_v2.0.a1 Prupe.6G192700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0112411 RchiOBHm_Chr3g0495821 RchiOBHm_Chr6g0302291 RchiOBHm_Chr6g0302361 RchiOBHm_Chr7g0242651
rosa_laevigata	RLG00000011180 RLG00000017978 RLG00000022586 RLG00000022760 RLG00000022761
rosa_multiflora	Rmu_sc0003633.1_g000017 Rmu_ssc0000254.1_g000002
rosa_roxburghii	Rroxscaffold_2G00131460 Rroxscaffold_3G00222610 Rroxscaffold_6G00392220
rosa_rugosa	Rorug03G0254300 Rorug03G0276700 Rorug06G0313800 Rorug07G0315900 Rorug07G0316000
rosa_samantha	Rh2AG233800 Rh2BG247000 Rh2CG238100 Rh2DG241300 Rh3AG304900 Rh3AG324000 Rh3BG340700 Rh3BG340800 Rh3BG360000 Rh3DG339900 Rh3DG359400 Rh6AG426500 Rh6BG476000 Rh6BG476100 Rh6DG425900 Rh6DG426000 Rh7AG471000 Rh7BG441300
rosa_wichuraiana	Rw0G005470 Rw2G018090 Rw3G026860 Rw3G028330 Rw7G039260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	888
AatII	GACGTC	1 cut(s)	390
AbsI	CCTCGAGG	1 cut(s)	145
Acc36I	ACCTGC	2 cut(s)	298, 888
AccB1I	GGYRCC	8 cut(s)	113, 140, 167, 571, 601, 900, 1003, 1033
AccBSI	CCGCTC	3 cut(s)	296, 497, 743
AccII	CGCG	1 cut(s)	119
AciI	CCGC	8 cut(s)	33, 117, 227, 294, 495, 741, 756, 980
AclWI	GGATC	4 cut(s)	274, 759, 772, 1109
AcsI	RAATTY	2 cut(s)	399, 856
AcuI	CTGAAG	2 cut(s)	45, 234
AcyI	GRCGYC	1 cut(s)	387
AfiI	CCNNNNNNNGG	4 cut(s)	272, 536, 703, 968
AgsI	TTSAA	5 cut(s)	234, 565, 997, 1026, 1122
AhlI	ACTAGT	1 cut(s)	848
AlwI	GGATC	4 cut(s)	274, 759, 772, 1109
Ama87I	CYCGRG	2 cut(s)	145, 172
ApeKI	GCWGC	5 cut(s)	29, 302, 320, 365, 368
ApoI	RAATTY	2 cut(s)	399, 856
AspLEI	GCGC	1 cut(s)	320
AspS9I	GGNCC	1 cut(s)	486
AsuC2I	CCSGG	1 cut(s)	219
AsuHPI	GGTGA	5 cut(s)	67, 537, 657, 714, 969
AvaI	CYCGRG	2 cut(s)	145, 172
AvaII	GGWCC	1 cut(s)	486
BaeGI	GKGCMC	1 cut(s)	905
BamHI	GGATCC	1 cut(s)	764
BanI	GGYRCC	8 cut(s)	113, 140, 167, 571, 601, 900, 1003, 1033
BarI	GAAGNNNNNNTAC	2 cut(s)	214, 246
BbsI	GAAGAC	1 cut(s)	261
BbvI	GCAGC	5 cut(s)	16, 289, 307, 355, 377
BccI	CCATC	4 cut(s)	511, 586, 830, 940
BceAI	ACGGC	1 cut(s)	356
BcgI	CGANNNNNNTGC	2 cut(s)	118, 152
BcnI	CCSGG	1 cut(s)	219
BcuI	ACTAGT	1 cut(s)	848
BfaI	CTAG	5 cut(s)	351, 483, 656, 849, 1088
BfmI	CTRYAG	1 cut(s)	381
BfoI	RGCGCY	1 cut(s)	321
BfuAI	ACCTGC	2 cut(s)	298, 888
BisI	GCNGC	7 cut(s)	30, 33, 294, 303, 321, 366, 369
BlsI	GCNGC	7 cut(s)	31, 34, 295, 304, 322, 367, 370
Bme1390I	CCNGG	1 cut(s)	219
Bme18I	GGWCC	1 cut(s)	486
BmeT110I	CYCGRG	2 cut(s)	145, 172
BmgT120I	GGNCC	1 cut(s)	486
BmrFI	CCNGG	1 cut(s)	219
BmsI	GCATC	1 cut(s)	898
BoxI	GACNNNNGTC	1 cut(s)	1145
BpiI	GAAGAC	1 cut(s)	261
BpmI	CTGGAG	4 cut(s)	49, 801, 807, 1041
BpuEI	CTTGAG	4 cut(s)	519, 654, 951, 1050
BpuMI	CCSGG	1 cut(s)	219
BsaBI	GATNNNNATC	1 cut(s)	769
BsaHI	GRCGYC	1 cut(s)	387
BsaJI	CCNNGG	2 cut(s)	217, 799
BsaWI	WCCGGW	1 cut(s)	631
BsaXI	ACNNNNNCTCC	2 cut(s)	643, 673
Bsc4I	CCNNNNNNNGG	4 cut(s)	272, 536, 703, 968
Bse118I	RCCGGY	4 cut(s)	59, 77, 131, 323
Bse1I	ACTGG	4 cut(s)	14, 66, 163, 313
Bse8I	GATNNNNATC	1 cut(s)	769
BseDI	CCNNGG	2 cut(s)	217, 799
BseJI	GATNNNNATC	1 cut(s)	769
BseLI	CCNNNNNNNGG	4 cut(s)	272, 536, 703, 968
BseMII	CTCAG	1 cut(s)	840
BseNI	ACTGG	4 cut(s)	14, 66, 163, 313
BseRI	GAGGAG	1 cut(s)	465
BseSI	GKGCMC	1 cut(s)	905
BseXI	GCAGC	5 cut(s)	16, 289, 307, 355, 377
BseYI	CCCAGC	1 cut(s)	1018
BsgI	GTGCAG	1 cut(s)	916
Bsh1236I	CGCG	1 cut(s)	119
BshNI	GGYRCC	8 cut(s)	113, 140, 167, 571, 601, 900, 1003, 1033
BsiHKCI	CYCGRG	2 cut(s)	145, 172
BsiSI	CCGG	8 cut(s)	60, 78, 111, 132, 219, 324, 479, 632
BslFI	GGGAC	2 cut(s)	1133, 1153
BslI	CCNNNNNNNGG	4 cut(s)	272, 536, 703, 968
BsmFI	GGGAC	2 cut(s)	1133, 1153
BsmI	GAATGC	1 cut(s)	104
BsoBI	CYCGRG	2 cut(s)	145, 172
Bsp1286I	GDGCHC	1 cut(s)	905
Bsp143I	GATC	3 cut(s)	279, 764, 1114
BspACI	CCGC	8 cut(s)	33, 117, 227, 294, 495, 741, 756, 980
BspCNI	CTCAG	1 cut(s)	839
BspFNI	CGCG	1 cut(s)	119
BspMI	ACCTGC	2 cut(s)	298, 888
BspPI	GGATC	4 cut(s)	274, 759, 772, 1109
BspT107I	GGYRCC	8 cut(s)	113, 140, 167, 571, 601, 900, 1003, 1033
BsrBI	CCGCTC	3 cut(s)	296, 497, 743
BsrFI	RCCGGY	4 cut(s)	59, 77, 131, 323
BsrI	ACTGG	4 cut(s)	14, 66, 163, 313
BssAI	RCCGGY	4 cut(s)	59, 77, 131, 323
BssECI	CCNNGG	2 cut(s)	217, 799
BssMI	GATC	3 cut(s)	279, 764, 1114
BssNI	GRCGYC	1 cut(s)	387
BssT1I	CCWWGG	1 cut(s)	799
Bst6I	CTCTTC	1 cut(s)	636
BstACI	GRCGYC	1 cut(s)	387
BstC8I	GCNNGC	2 cut(s)	121, 316
BstDEI	CTNAG	4 cut(s)	332, 355, 826, 867
BstEII	GGTNACC	2 cut(s)	543, 975
BstFNI	CGCG	1 cut(s)	119
BstH2I	RGCGCY	1 cut(s)	321
BstHHI	GCGC	1 cut(s)	320
BstKTI	GATC	3 cut(s)	282, 767, 1117
BstMBI	GATC	3 cut(s)	279, 764, 1114
BstNSI	RCATGY	1 cut(s)	453
BstPAI	GACNNNNGTC	1 cut(s)	1145
BstPI	GGTNACC	2 cut(s)	543, 975
BstSCI	CCNGG	1 cut(s)	217
BstSFI	CTRYAG	1 cut(s)	381
BstSLI	GKGCMC	1 cut(s)	905
BstUI	CGCG	1 cut(s)	119
BstV1I	GCAGC	5 cut(s)	16, 289, 307, 355, 377
BstV2I	GAAGAC	1 cut(s)	261
BstX2I	RGATCY	1 cut(s)	764
BstYI	RGATCY	1 cut(s)	764
BtgZI	GCGATG	1 cut(s)	37
BtsI	GCAGTG	2 cut(s)	339, 811
BtsIMutI	CAGTG	6 cut(s)	73, 156, 306, 339, 811, 899
BveI	ACCTGC	2 cut(s)	298, 888
Cac8I	GCNNGC	2 cut(s)	121, 316
CfoI	GCGC	1 cut(s)	320
Cfr10I	RCCGGY	4 cut(s)	59, 77, 131, 323
Cfr13I	GGNCC	1 cut(s)	486
CseI	GACGC	1 cut(s)	716
CviAII	CATG	4 cut(s)	10, 450, 832, 1134
DdeI	CTNAG	4 cut(s)	332, 355, 826, 867
DpnI	GATC	3 cut(s)	281, 766, 1116
DpnII	GATC	3 cut(s)	279, 764, 1114
DraI	TTTAAA	3 cut(s)	405, 594, 861
Eam1104I	CTCTTC	1 cut(s)	636
EarI	CTCTTC	1 cut(s)	636
Eco130I	CCWWGG	1 cut(s)	799
Eco47I	GGWCC	1 cut(s)	486
Eco57I	CTGAAG	2 cut(s)	45, 234
Eco88I	CYCGRG	2 cut(s)	145, 172
Eco91I	GGTNACC	2 cut(s)	543, 975
EcoO109I	RGGNCCY	1 cut(s)	486
EcoO65I	GGTNACC	2 cut(s)	543, 975
EcoT14I	CCWWGG	1 cut(s)	799
EcoT22I	ATGCAT	1 cut(s)	104
ErhI	CCWWGG	1 cut(s)	799
FaeI	CATG	4 cut(s)	13, 453, 835, 1137
FaqI	GGGAC	2 cut(s)	1133, 1153
FatI	CATG	4 cut(s)	9, 449, 831, 1133
FauI	CCCGC	2 cut(s)	502, 748
Fnu4HI	GCNGC	7 cut(s)	30, 33, 294, 303, 321, 366, 369
Fsp4HI	GCNGC	7 cut(s)	30, 33, 294, 303, 321, 366, 369
FspBI	CTAG	5 cut(s)	351, 483, 656, 849, 1088
GlaI	GCGC	1 cut(s)	319
GluI	GCNGC	7 cut(s)	30, 33, 294, 303, 321, 366, 369
GsaI	CCCAGC	1 cut(s)	1022
GsuI	CTGGAG	4 cut(s)	49, 801, 807, 1041
HaeII	RGCGCY	1 cut(s)	321
HapII	CCGG	8 cut(s)	60, 78, 111, 132, 219, 324, 479, 632
HgaI	GACGC	1 cut(s)	716
HhaI	GCGC	1 cut(s)	320
Hin1I	GRCGYC	1 cut(s)	387
Hin1II	CATG	4 cut(s)	13, 453, 835, 1137
Hin6I	GCGC	1 cut(s)	318
HinP1I	GCGC	1 cut(s)	318
HinfI	GANTC	3 cut(s)	5, 523, 955
HpaII	CCGG	8 cut(s)	60, 78, 111, 132, 219, 324, 479, 632
HphI	GGTGA	5 cut(s)	67, 537, 657, 714, 969
Hpy166II	GTNNAC	1 cut(s)	224
Hpy188I	TCNGA	3 cut(s)	85, 253, 829
Hpy188III	TCNNGA	4 cut(s)	431, 671, 1067, 1165
Hpy8I	GTNNAC	1 cut(s)	224
HpyCH4IV	ACGT	1 cut(s)	387
HpyCH4V	TGCA	9 cut(s)	102, 129, 183, 365, 447, 737, 897, 1186, 1193
HpyF3I	CTNAG	4 cut(s)	332, 355, 826, 867
HpySE526I	ACGT	1 cut(s)	387
Hsp92I	GRCGYC	1 cut(s)	387
Hsp92II	CATG	4 cut(s)	13, 453, 835, 1137
HspAI	GCGC	1 cut(s)	318
Kzo9I	GATC	3 cut(s)	279, 764, 1114
Lsp1109I	GCAGC	5 cut(s)	16, 289, 307, 355, 377
LweI	GCATC	1 cut(s)	898
MaeI	CTAG	5 cut(s)	351, 483, 656, 849, 1088
MaeII	ACGT	1 cut(s)	387
MaeIII	GTNAC	6 cut(s)	73, 373, 543, 871, 975, 987
MalI	GATC	3 cut(s)	281, 766, 1116
MbiI	CCGCTC	3 cut(s)	296, 497, 743
MboI	GATC	3 cut(s)	279, 764, 1114
MboII	GAAGA	5 cut(s)	240, 266, 653, 903, 1121
MflI	RGATCY	1 cut(s)	764
MhlI	GDGCHC	1 cut(s)	905
MluCI	AATT	5 cut(s)	18, 244, 399, 442, 856
MlyI	GAGTC	2 cut(s)	517, 949
MmeI	TCCRAC	1 cut(s)	108
Mph1103I	ATGCAT	1 cut(s)	104
MseI	TTAA	3 cut(s)	404, 593, 860
MspA1I	CMGCKG	1 cut(s)	368
MspI	CCGG	8 cut(s)	60, 78, 111, 132, 219, 324, 479, 632
MspR9I	CCNGG	1 cut(s)	219
Mva1269I	GAATGC	1 cut(s)	104
MvnI	CGCG	1 cut(s)	119
NciI	CCSGG	1 cut(s)	219
NdeII	GATC	3 cut(s)	279, 764, 1114
NlaIII	CATG	4 cut(s)	13, 453, 835, 1137
NmuCI	GTSAC	4 cut(s)	73, 543, 975, 987
NsiI	ATGCAT	1 cut(s)	104
NspI	RCATGY	1 cut(s)	453
PaeR7I	CTCGAG	1 cut(s)	145
PaqCI	CACCTGC	1 cut(s)	888
PctI	GAATGC	1 cut(s)	104
PfeI	GAWTC	1 cut(s)	5
PkrI	GCNGC	7 cut(s)	31, 34, 295, 304, 322, 367, 370
PleI	GAGTC	2 cut(s)	517, 949
PpsI	GAGTC	2 cut(s)	517, 949
PpuMI	RGGWCCY	1 cut(s)	486
PshAI	GACNNNNGTC	1 cut(s)	1145
Psp5II	RGGWCCY	1 cut(s)	486
PspEI	GGTNACC	2 cut(s)	543, 975
PspFI	CCCAGC	1 cut(s)	1018
PspPI	GGNCC	1 cut(s)	486
PspPPI	RGGWCCY	1 cut(s)	486
PspXI	VCTCGAGB	1 cut(s)	145
PsuI	RGATCY	1 cut(s)	764
PvuII	CAGCTG	1 cut(s)	368
SaqAI	TTAA	3 cut(s)	404, 593, 860
SatI	GCNGC	7 cut(s)	30, 33, 294, 303, 321, 366, 369
Sau3AI	GATC	3 cut(s)	279, 764, 1114
Sau96I	GGNCC	1 cut(s)	486
SchI	GAGTC	2 cut(s)	517, 949
ScrFI	CCNGG	1 cut(s)	219
SduI	GDGCHC	1 cut(s)	905
SfaNI	GCATC	1 cut(s)	898
SfcI	CTRYAG	1 cut(s)	381
Sfr274I	CTCGAG	1 cut(s)	145
SinI	GGWCC	1 cut(s)	486
SlaI	CTCGAG	1 cut(s)	145
SmlI	CTYRAG	5 cut(s)	145, 534, 669, 966, 1065
SmoI	CTYRAG	5 cut(s)	145, 534, 669, 966, 1065
SpeI	ACTAGT	1 cut(s)	848
Sse9I	AATT	5 cut(s)	18, 244, 399, 442, 856
SsiI	CCGC	8 cut(s)	33, 117, 227, 294, 495, 741, 756, 980
SspMI	CTAG	5 cut(s)	351, 483, 656, 849, 1088
StyD4I	CCNGG	1 cut(s)	217
StyI	CCWWGG	1 cut(s)	799
TaiI	ACGT	1 cut(s)	390
TaqI	TCGA	3 cut(s)	146, 521, 953
TasI	AATT	5 cut(s)	18, 244, 399, 442, 856
TauI	GCSGC	2 cut(s)	35, 296
TfiI	GAWTC	1 cut(s)	5
Tru1I	TTAA	3 cut(s)	404, 593, 860
Tru9I	TTAA	3 cut(s)	404, 593, 860
TscAI	CASTG	6 cut(s)	73, 163, 313, 346, 811, 899
TseFI	GTSAC	4 cut(s)	73, 543, 975, 987
TseI	GCWGC	5 cut(s)	29, 302, 320, 365, 368
Tsp45I	GTSAC	4 cut(s)	73, 543, 975, 987
TspDTI	ATGAA	1 cut(s)	435
TspRI	CASTG	6 cut(s)	73, 163, 313, 346, 811, 899
VpaK11BI	GGWCC	1 cut(s)	486
XapI	RAATTY	2 cut(s)	399, 856
XceI	RCATGY	1 cut(s)	453
XcmI	CCANNNNNNNNNTGG	1 cut(s)	829
XhoI	CTCGAG	1 cut(s)	145
XspI	CTAG	5 cut(s)	351, 483, 656, 849, 1088
ZraI	GACGTC	1 cut(s)	388
Zsp2I	ATGCAT	1 cut(s)	104

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.