Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0001010

Physical Location & Seq

Genomic Coordinates Forward (+)

25199360 .. 25200077

Gene Structure 718 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG247000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

ATGGCCCGTACTAAGCAAACTGCTCGTAAGTCAACTGGAGGAAAGGCTCCGAGGAAGCAGCTCGCCACCAAGGCTGCTCGTAAGTCTGCCCCAACCACTGGAGGAGTCAAGAAGCCCCACAGATACCGCCCTGGAACTGTTGCTCTTCGTGAAATCCGTAAGTACCAGAAGAGTACTGAGCTCCTGATCAGGAAGTTGCCATTCCAGAGGCTTGTTCGTGAAATTGCACAGGACTTTAAGACTGATCTGCGTTTCCAGAGCCATGCAGTTCTTGCCCTGCAGGAGGCTGCTGAGGCTTACCTGGTTGGTCTGTTTGAGGACACCAATCTCTGTGCCATCCATGCCAAGCGGGTTACCATCATGCCCAAGGATATCCAGCTGGCTAGGAGGATCAGGGGTGAGCGTGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000785 GO:0000786 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006323 GO:0006325 GO:0006333 GO:0006334 GO:0006996 GO:0008150 GO:0009987 GO:0016043 GO:0022607 GO:0031490 GO:0031491 GO:0031492 GO:0031497 GO:0032991 GO:0032993 GO:0034622 GO:0034728 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0044815 GO:0044877 GO:0051276 GO:0065003 GO:0065004 GO:0071103 GO:0071824 GO:0071840 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko05034 ko05202 ko05322 map05034 map05202 map05322

Pfam Domains

Protein Families

Histone

Protein Analysis

136

Amino Acids

15.41

Weight (kDa)

11.15

Isoelectric Point (pI)

38.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Histone	PF00125	44 - 131	1e-38	Core histone H2A/H2B/H3/H4 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0001010)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G40030 AT4G40030 AT4G40030 AT4G40040 AT4G40040 AT4G40040 AT5G10980
fragaria_vesca	FvH4_1g20270 FvH4_1g28601 FvH4_1g29790 FvH4_5g36680
malus_domestica	MD01G1035300.v1.1 MD15G1320600.v1.1 MD15G1373700.v1.1
prunus_persica	Prupe.1G369600_v2.0.a1 Prupe.1G522300_v2.0.a1 Prupe.1G522300_v2.0.a1 Prupe.6G192700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0112411 RchiOBHm_Chr3g0495821 RchiOBHm_Chr6g0302291 RchiOBHm_Chr6g0302361 RchiOBHm_Chr7g0242651
rosa_laevigata	RLG00000011180 RLG00000017978 RLG00000022586 RLG00000022760 RLG00000022761
rosa_multiflora	Rmu_sc0003633.1_g000017 Rmu_ssc0000254.1_g000002
rosa_roxburghii	Rroxscaffold_2G00131460 Rroxscaffold_3G00222610 Rroxscaffold_6G00392220
rosa_rugosa	Rorug03G0254300 Rorug03G0276700 Rorug06G0313800 Rorug07G0315900 Rorug07G0316000
rosa_samantha	Rh2AG233800 Rh2BG247000 Rh2CG238100 Rh2DG241300 Rh3AG304900 Rh3AG324000 Rh3BG340700 Rh3BG340800 Rh3BG360000 Rh3DG339900 Rh3DG359400 Rh6AG426500 Rh6BG476000 Rh6BG476100 Rh6DG425900 Rh6DG426000 Rh7AG471000 Rh7BG441300
rosa_wichuraiana	Rw0G005470 Rw2G018090 Rw3G026860 Rw3G028330 Rw7G039260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	98
AciI	CCGC	2 cut(s)	127, 349
AclWI	GGATC	1 cut(s)	398
AfaI	GTAC	3 cut(s)	10, 164, 175
AfiI	CCNNNNNNNGG	2 cut(s)	98, 283
AjnI	CCWGG	2 cut(s)	130, 300
AluBI	AGCT	3 cut(s)	61, 181, 379
AluI	AGCT	3 cut(s)	61, 181, 379
Alw21I	GWGCWC	1 cut(s)	183
AlwI	GGATC	1 cut(s)	398
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	3 cut(s)	58, 74, 287
AspS9I	GGNCC	1 cut(s)	4
AsuHPI	GGTGA	1 cut(s)	410
BanII	GRGCYC	1 cut(s)	183
Bbv12I	GWGCWC	1 cut(s)	183
BbvCI	CCTCAGC	1 cut(s)	291
BbvI	GCAGC	3 cut(s)	61, 70, 274
BccI	CCATC	2 cut(s)	344, 365
BcgI	CGANNNNNNTGC	2 cut(s)	5, 39
BciT130I	CCWGG	2 cut(s)	132, 302
BclI	TGATCA	1 cut(s)	186
BfaI	CTAG	1 cut(s)	384
BfmI	CTRYAG	1 cut(s)	278
BglI	GCCNNNNNGGC	1 cut(s)	71
BisI	GCNGC	3 cut(s)	59, 75, 288
BlsI	GCNGC	3 cut(s)	60, 76, 289
BmcAI	AGTACT	1 cut(s)	175
Bme1390I	CCNGG	2 cut(s)	132, 302
BmgT120I	GGNCC	1 cut(s)	4
BmiI	GGNNCC	1 cut(s)	48
BmrFI	CCNGG	2 cut(s)	132, 302
BpmI	CTGGAG	2 cut(s)	57, 120
Bpu10I	CCTNAGC	1 cut(s)	291
BsaJI	CCNNGG	4 cut(s)	50, 69, 130, 366
Bsc4I	CCNNNNNNNGG	2 cut(s)	98, 283
Bse1I	ACTGG	2 cut(s)	40, 103
BseBI	CCWGG	2 cut(s)	132, 302
BseDI	CCNNGG	4 cut(s)	50, 69, 130, 366
BseGI	GGATG	1 cut(s)	336
BseLI	CCNNNNNNNGG	2 cut(s)	98, 283
BseMII	CTCAG	2 cut(s)	168, 282
BseNI	ACTGG	2 cut(s)	40, 103
BseRI	GAGGAG	1 cut(s)	117
BseXI	GCAGC	3 cut(s)	61, 70, 274
BshFI	GGCC	1 cut(s)	5
BsiHKAI	GWGCWC	1 cut(s)	183
BslI	CCNNNNNNNGG	2 cut(s)	98, 283
BsnI	GGCC	1 cut(s)	5
Bsp1286I	GDGCHC	1 cut(s)	183
Bsp143I	GATC	3 cut(s)	186, 244, 390
BspACI	CCGC	2 cut(s)	127, 349
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	2 cut(s)	169, 283
BspLI	GGNNCC	1 cut(s)	48
BspMAI	CTGCAG	1 cut(s)	282
BspPI	GGATC	1 cut(s)	398
BspQI	GCTCTTC	1 cut(s)	150
BsrI	ACTGG	2 cut(s)	40, 103
BssECI	CCNNGG	4 cut(s)	50, 69, 130, 366
BssMI	GATC	3 cut(s)	186, 244, 390
BssT1I	CCWWGG	2 cut(s)	69, 366
Bst2UI	CCWGG	2 cut(s)	132, 302
Bst4CI	ACNGT	1 cut(s)	139
Bst6I	CTCTTC	2 cut(s)	150, 164
BstAPI	GCANNNNNTGC	1 cut(s)	272
BstC8I	GCNNGC	3 cut(s)	63, 381, 405
BstDEI	CTNAG	3 cut(s)	12, 177, 291
BstEII	GGTNACC	1 cut(s)	352
BstENI	CCTNNNNNAGG	1 cut(s)	281
BstF5I	GGATG	1 cut(s)	336
BstKTI	GATC	3 cut(s)	189, 247, 393
BstMBI	GATC	3 cut(s)	186, 244, 390
BstMWI	GCNNNNNNNGC	4 cut(s)	71, 272, 293, 341
BstNI	CCWGG	2 cut(s)	132, 302
BstPI	GGTNACC	1 cut(s)	352
BstSCI	CCNGG	2 cut(s)	130, 300
BstSFI	CTRYAG	1 cut(s)	278
BstV1I	GCAGC	3 cut(s)	61, 70, 274
BsuRI	GGCC	1 cut(s)	5
BtsCI	GGATG	1 cut(s)	336
BtsIMutI	CAGTG	1 cut(s)	96
Cac8I	GCNNGC	3 cut(s)	63, 381, 405
Cfr13I	GGNCC	1 cut(s)	4
CsiI	ACCWGGT	1 cut(s)	300
Csp6I	GTAC	3 cut(s)	9, 163, 174
CviAII	CATG	3 cut(s)	263, 341, 361
CviQI	GTAC	3 cut(s)	9, 163, 174
DdeI	CTNAG	3 cut(s)	12, 177, 291
DpnI	GATC	3 cut(s)	188, 246, 392
DpnII	GATC	3 cut(s)	186, 244, 390
Eam1104I	CTCTTC	2 cut(s)	150, 164
EarI	CTCTTC	2 cut(s)	150, 164
Ecl136II	GAGCTC	1 cut(s)	181
Eco130I	CCWWGG	2 cut(s)	69, 366
Eco24I	GRGCYC	1 cut(s)	183
Eco32I	GATATC	1 cut(s)	373
Eco53kI	GAGCTC	1 cut(s)	181
Eco91I	GGTNACC	1 cut(s)	352
EcoICRI	GAGCTC	1 cut(s)	181
EcoNI	CCTNNNNNAGG	1 cut(s)	281
EcoO65I	GGTNACC	1 cut(s)	352
EcoRII	CCWGG	2 cut(s)	130, 300
EcoRV	GATATC	1 cut(s)	373
EcoT14I	CCWWGG	2 cut(s)	69, 366
EcoT38I	GRGCYC	1 cut(s)	183
ErhI	CCWWGG	2 cut(s)	69, 366
FaeI	CATG	3 cut(s)	266, 344, 364
FaiI	YATR	4 cut(s)	264, 342, 362, 409
FatI	CATG	3 cut(s)	262, 340, 360
FauI	CCCGC	1 cut(s)	342
FbaI	TGATCA	1 cut(s)	186
Fnu4HI	GCNGC	3 cut(s)	59, 75, 288
FokI	GGATG	1 cut(s)	323
FriOI	GRGCYC	1 cut(s)	183
Fsp4HI	GCNGC	3 cut(s)	59, 75, 288
FspBI	CTAG	1 cut(s)	384
GluI	GCNGC	3 cut(s)	59, 75, 288
GsuI	CTGGAG	2 cut(s)	57, 120
HaeIII	GGCC	1 cut(s)	5
Hin1II	CATG	3 cut(s)	266, 344, 364
HincII	GTYRAC	1 cut(s)	33
HindII	GTYRAC	1 cut(s)	33
HinfI	GANTC	1 cut(s)	105
HphI	GGTGA	1 cut(s)	410
Hpy166II	GTNNAC	1 cut(s)	33
Hpy188I	TCNGA	1 cut(s)	51
Hpy188III	TCNNGA	7 cut(s)	109, 149, 184, 190, 205, 218, 256
Hpy8I	GTNNAC	1 cut(s)	33
HpyCH4III	ACNGT	1 cut(s)	139
HpyCH4V	TGCA	4 cut(s)	227, 266, 280, 407
HpyF10VI	GCNNNNNNNGC	4 cut(s)	71, 272, 293, 341
HpyF3I	CTNAG	3 cut(s)	12, 177, 291
Hsp92II	CATG	3 cut(s)	266, 344, 364
Ksp22I	TGATCA	1 cut(s)	186
Kzo9I	GATC	3 cut(s)	186, 244, 390
LguI	GCTCTTC	1 cut(s)	150
LmnI	GCTCC	2 cut(s)	52, 186
Lsp1109I	GCAGC	3 cut(s)	61, 70, 274
MabI	ACCWGGT	1 cut(s)	300
MaeI	CTAG	1 cut(s)	384
MaeIII	GTNAC	1 cut(s)	352
MalI	GATC	3 cut(s)	188, 246, 392
MboI	GATC	3 cut(s)	186, 244, 390
MboII	GAAGA	2 cut(s)	137, 181
MhlI	GDGCHC	1 cut(s)	183
MluCI	AATT	1 cut(s)	222
MlyI	GAGTC	1 cut(s)	114
MnlI	CCTC	8 cut(s)	32, 45, 95, 201, 277, 286, 310, 381
MseI	TTAA	1 cut(s)	237
MspA1I	CMGCKG	1 cut(s)	379
MspR9I	CCNGG	2 cut(s)	132, 302
MvaI	CCWGG	2 cut(s)	132, 302
MwoI	GCNNNNNNNGC	4 cut(s)	71, 272, 293, 341
NdeII	GATC	3 cut(s)	186, 244, 390
NlaIII	CATG	3 cut(s)	266, 344, 364
NlaIV	GGNNCC	1 cut(s)	48
PciSI	GCTCTTC	1 cut(s)	150
PcsI	WCGNNNNNNNCGW	1 cut(s)	154
PflMI	CCANNNNNTGG	1 cut(s)	98
PkrI	GCNGC	3 cut(s)	60, 76, 289
PleI	GAGTC	1 cut(s)	113
PpsI	GAGTC	1 cut(s)	113
Psp124BI	GAGCTC	1 cut(s)	183
Psp6I	CCWGG	2 cut(s)	130, 300
PspEI	GGTNACC	1 cut(s)	352
PspGI	CCWGG	2 cut(s)	130, 300
PspN4I	GGNNCC	1 cut(s)	48
PspPI	GGNCC	1 cut(s)	4
PstI	CTGCAG	1 cut(s)	282
PvuII	CAGCTG	1 cut(s)	379
RsaI	GTAC	3 cut(s)	10, 164, 175
RsaNI	GTAC	3 cut(s)	9, 163, 174
SacI	GAGCTC	1 cut(s)	183
SapI	GCTCTTC	1 cut(s)	150
SaqAI	TTAA	1 cut(s)	237
SatI	GCNGC	3 cut(s)	59, 75, 288
Sau3AI	GATC	3 cut(s)	186, 244, 390
Sau96I	GGNCC	1 cut(s)	4
SbfI	CCTGCAGG	1 cut(s)	282
ScaI	AGTACT	1 cut(s)	175
SchI	GAGTC	1 cut(s)	114
ScrFI	CCNGG	2 cut(s)	132, 302
SdaI	CCTGCAGG	1 cut(s)	282
SduI	GDGCHC	1 cut(s)	183
SetI	ASST	4 cut(s)	63, 183, 303, 381
SexAI	ACCWGGT	1 cut(s)	300
SfcI	CTRYAG	1 cut(s)	278
Sse8387I	CCTGCAGG	1 cut(s)	282
Sse9I	AATT	1 cut(s)	222
SsiI	CCGC	2 cut(s)	127, 349
SspMI	CTAG	1 cut(s)	384
SstI	GAGCTC	1 cut(s)	183
StyD4I	CCNGG	2 cut(s)	130, 300
StyI	CCWWGG	2 cut(s)	69, 366
TaaI	ACNGT	1 cut(s)	139
TasI	AATT	1 cut(s)	222
TatI	WGTACW	1 cut(s)	173
Tru1I	TTAA	1 cut(s)	237
Tru9I	TTAA	1 cut(s)	237
TscAI	CASTG	1 cut(s)	103
TseI	GCWGC	3 cut(s)	58, 74, 287
TspGWI	ACGGA	1 cut(s)	146
TspRI	CASTG	1 cut(s)	103
Van91I	CCANNNNNTGG	1 cut(s)	98
XagI	CCTNNNNNAGG	1 cut(s)	281
XspI	CTAG	1 cut(s)	384
ZrmI	AGTACT	1 cut(s)	175

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.