Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0001010

Physical Location & Seq

Genomic Coordinates Reverse (-)

31967371 .. 31968433

Gene Structure 1063 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0315900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

ATGGCTTTCACAGCTATGCTCATTCTCTGTGCCTCTGTTCTCCTTGTCGCTACTAGGGTCTCATGCTATGATGATCACGAGAAAGTTGAGAAGAAGGATCAAAGTGAACGCCAAAGTTTACTCGGTACGTGGCTATATCCGCACAATGTTCCTAAAGCACCTGAATCATCACCGCTACTGCTAAATCAGCCCATTGCTACTCTACCACGGTCGCCCTCGCCGGTCACCTGTGCACAAGCAAAACCACCTGCCAGTCACCAGTCCCAAAGTTTATTAAGTATGTGGCTATATTCGGGCATTCCTGAAGCACCCTCGCCAGTCATCTGTGCACAAGCAACACCACCCACAACATCATCCACTCCCATTGTGAATACTCACAGAGATTGCATGCCGTTGTGTGCAGCGAGGTGCAAAGTAGAACCACACAGGAAGATATGCAGGAGATTGTGTATGAAGTGCTGTAGCCGGTGCAAATGTGTTCCGCCGGGAGAATATGGCACCAACATGGATAAGTGTGGCAAGTGCTACACTGATATGGAGTATCACGGCCATAAGTGCCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000785 GO:0000786 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006323 GO:0006325 GO:0006333 GO:0006334 GO:0006996 GO:0008150 GO:0009987 GO:0016043 GO:0022607 GO:0031490 GO:0031491 GO:0031492 GO:0031497 GO:0032991 GO:0032993 GO:0034622 GO:0034728 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0044815 GO:0044877 GO:0051276 GO:0065003 GO:0065004 GO:0071103 GO:0071824 GO:0071840 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko05034 ko05202 ko05322 map05034 map05202 map05322

Pfam Domains

Protein Families

Histone

Protein Analysis

187

Amino Acids

20.62

Weight (kDa)

8.68

Isoelectric Point (pI)

65.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GASA	PF02704	128 - 187	1.6e-13	Gibberellin regulated protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001010)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G40030 AT4G40030 AT4G40030 AT4G40040 AT4G40040 AT4G40040 AT5G10980
fragaria_vesca	FvH4_1g20270 FvH4_1g28601 FvH4_1g29790 FvH4_5g36680
malus_domestica	MD01G1035300.v1.1 MD15G1320600.v1.1 MD15G1373700.v1.1
prunus_persica	Prupe.1G369600_v2.0.a1 Prupe.1G522300_v2.0.a1 Prupe.1G522300_v2.0.a1 Prupe.6G192700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0112411 RchiOBHm_Chr3g0495821 RchiOBHm_Chr6g0302291 RchiOBHm_Chr6g0302361 RchiOBHm_Chr7g0242651
rosa_laevigata	RLG00000011180 RLG00000017978 RLG00000022586 RLG00000022760 RLG00000022761
rosa_multiflora	Rmu_sc0003633.1_g000017 Rmu_ssc0000254.1_g000002
rosa_roxburghii	Rroxscaffold_2G00131460 Rroxscaffold_3G00222610 Rroxscaffold_6G00392220
rosa_rugosa	Rorug03G0254300 Rorug03G0276700 Rorug06G0313800 Rorug07G0315900 Rorug07G0316000
rosa_samantha	Rh2AG233800 Rh2BG247000 Rh2CG238100 Rh2DG241300 Rh3AG304900 Rh3AG324000 Rh3BG340700 Rh3BG340800 Rh3BG360000 Rh3DG339900 Rh3DG359400 Rh6AG426500 Rh6BG476000 Rh6BG476100 Rh6DG425900 Rh6DG426000 Rh7AG471000 Rh7BG441300
rosa_wichuraiana	Rw0G005470 Rw2G018090 Rw3G026860 Rw3G028330 Rw7G039260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	256
Acc36I	ACCTGC	1 cut(s)	256
AccB1I	GGYRCC	1 cut(s)	497
AciI	CCGC	3 cut(s)	140, 173, 482
AclWI	GGATC	1 cut(s)	105
AcoI	YGGCCR	1 cut(s)	547
AcuI	CTGAAG	1 cut(s)	324
AfaI	GTAC	1 cut(s)	127
AluBI	AGCT	1 cut(s)	14
AluI	AGCT	1 cut(s)	14
Alw21I	GWGCWC	2 cut(s)	235, 331
Alw26I	GTCTC	1 cut(s)	64
Alw44I	GTGCAC	2 cut(s)	231, 327
AlwI	GGATC	1 cut(s)	105
AoxI	GGCC	1 cut(s)	547
ApaLI	GTGCAC	2 cut(s)	231, 327
ApeKI	GCWGC	1 cut(s)	401
AsuC2I	CCSGG	1 cut(s)	486
AsuHPI	GGTGA	3 cut(s)	162, 217, 248
BaeGI	GKGCMC	3 cut(s)	235, 331, 560
BanI	GGYRCC	1 cut(s)	497
BauI	CACGAG	1 cut(s)	77
Bbv12I	GWGCWC	2 cut(s)	235, 331
BbvI	GCAGC	1 cut(s)	413
BceAI	ACGGC	2 cut(s)	376, 562
BclI	TGATCA	1 cut(s)	73
BcnI	CCSGG	1 cut(s)	486
BcoDI	GTCTC	1 cut(s)	64
BfaI	CTAG	1 cut(s)	54
BfmI	CTRYAG	1 cut(s)	460
BfuAI	ACCTGC	1 cut(s)	256
BisI	GCNGC	1 cut(s)	402
BlsI	GCNGC	1 cut(s)	403
Bme1390I	CCNGG	1 cut(s)	486
BmiI	GGNNCC	1 cut(s)	499
BmrFI	CCNGG	1 cut(s)	486
BpuMI	CCSGG	1 cut(s)	486
BsaAI	YACGTR	1 cut(s)	129
BsaI	GGTCTC	1 cut(s)	64
BsaJI	CCNNGG	1 cut(s)	206
BsaXI	ACNNNNNCTCC	2 cut(s)	433, 463
Bse118I	RCCGGY	2 cut(s)	220, 465
Bse1I	ACTGG	3 cut(s)	252, 259, 317
Bse3DI	GCAATG	1 cut(s)	192
BseDI	CCNNGG	1 cut(s)	206
BseGI	GGATG	1 cut(s)	353
BseMI	GCAATG	1 cut(s)	192
BseNI	ACTGG	3 cut(s)	252, 259, 317
BseSI	GKGCMC	3 cut(s)	235, 331, 560
BseXI	GCAGC	1 cut(s)	413
BsgI	GTGCAG	1 cut(s)	420
Bsh1285I	CGRYCG	1 cut(s)	212
BshFI	GGCC	1 cut(s)	549
BshNI	GGYRCC	1 cut(s)	497
BsiEI	CGRYCG	1 cut(s)	212
BsiHKAI	GWGCWC	2 cut(s)	235, 331
BsiSI	CCGG	3 cut(s)	221, 466, 485
BslFI	GGGAC	1 cut(s)	247
BsmAI	GTCTC	1 cut(s)	64
BsmFI	GGGAC	1 cut(s)	247
BsmI	GAATGC	1 cut(s)	297
BsnI	GGCC	1 cut(s)	549
Bso31I	GGTCTC	1 cut(s)	64
Bsp1286I	GDGCHC	3 cut(s)	235, 331, 560
Bsp143I	GATC	2 cut(s)	73, 97
BspACI	CCGC	3 cut(s)	140, 173, 482
BspANI	GGCC	1 cut(s)	549
BspLI	GGNNCC	1 cut(s)	499
BspMI	ACCTGC	1 cut(s)	256
BspPI	GGATC	1 cut(s)	105
BspT107I	GGYRCC	1 cut(s)	497
BspTNI	GGTCTC	1 cut(s)	64
BsrDI	GCAATG	1 cut(s)	192
BsrFI	RCCGGY	2 cut(s)	220, 465
BsrI	ACTGG	3 cut(s)	252, 259, 317
BssAI	RCCGGY	2 cut(s)	220, 465
BssECI	CCNNGG	1 cut(s)	206
BssMI	GATC	2 cut(s)	73, 97
BssSI	CACGAG	1 cut(s)	77
Bst2BI	CACGAG	1 cut(s)	77
Bst4CI	ACNGT	1 cut(s)	210
BstBAI	YACGTR	1 cut(s)	129
BstC8I	GCNNGC	1 cut(s)	389
BstDSI	CCRYGG	1 cut(s)	206
BstEII	GGTNACC	1 cut(s)	223
BstF5I	GGATG	1 cut(s)	353
BstKTI	GATC	2 cut(s)	76, 100
BstMAI	GTCTC	1 cut(s)	64
BstMBI	GATC	2 cut(s)	73, 97
BstMCI	CGRYCG	1 cut(s)	212
BstMWI	GCNNNNNNNGC	4 cut(s)	11, 139, 187, 555
BstNSI	RCATGY	1 cut(s)	391
BstPI	GGTNACC	1 cut(s)	223
BstSCI	CCNGG	1 cut(s)	484
BstSFI	CTRYAG	1 cut(s)	460
BstSLI	GKGCMC	3 cut(s)	235, 331, 560
BstV1I	GCAGC	1 cut(s)	413
BsuRI	GGCC	1 cut(s)	549
BtgI	CCRYGG	1 cut(s)	206
BtsCI	GGATG	1 cut(s)	353
BtsIMutI	CAGTG	1 cut(s)	528
BveI	ACCTGC	1 cut(s)	256
Cac8I	GCNNGC	1 cut(s)	389
Cfr10I	RCCGGY	2 cut(s)	220, 465
Csp6I	GTAC	1 cut(s)	126
CspCI	CAANNNNNGTGG	2 cut(s)	346, 381
CviAII	CATG	4 cut(s)	63, 388, 505, 561
CviJI	RGCY	7 cut(s)	5, 14, 133, 190, 286, 465, 549
CviKI_1	RGCY	7 cut(s)	5, 14, 133, 190, 286, 465, 549
CviQI	GTAC	1 cut(s)	126
DpnI	GATC	2 cut(s)	75, 99
DpnII	GATC	2 cut(s)	73, 97
EaeI	YGGCCR	1 cut(s)	547
EciI	GGCGGA	1 cut(s)	471
Eco31I	GGTCTC	1 cut(s)	64
Eco57I	CTGAAG	1 cut(s)	324
Eco91I	GGTNACC	1 cut(s)	223
EcoO65I	GGTNACC	1 cut(s)	223
FaeI	CATG	4 cut(s)	66, 391, 508, 564
FaqI	GGGAC	1 cut(s)	247
FatI	CATG	4 cut(s)	62, 387, 504, 560
FbaI	TGATCA	1 cut(s)	73
Fnu4HI	GCNGC	1 cut(s)	402
FokI	GGATG	1 cut(s)	340
Fsp4HI	GCNGC	1 cut(s)	402
FspBI	CTAG	1 cut(s)	54
GluI	GCNGC	1 cut(s)	402
HaeIII	GGCC	1 cut(s)	549
HapII	CCGG	3 cut(s)	221, 466, 485
Hin1II	CATG	4 cut(s)	66, 391, 508, 564
HinfI	GANTC	1 cut(s)	164
HpaII	CCGG	3 cut(s)	221, 466, 485
HphI	GGTGA	3 cut(s)	162, 217, 248
Hpy166II	GTNNAC	4 cut(s)	107, 119, 233, 329
Hpy188III	TCNNGA	2 cut(s)	77, 302
Hpy8I	GTNNAC	4 cut(s)	107, 119, 233, 329
HpyAV	CCTTC	1 cut(s)	88
HpyCH4III	ACNGT	1 cut(s)	210
HpyCH4IV	ACGT	1 cut(s)	128
HpyCH4V	TGCA	7 cut(s)	233, 329, 387, 401, 411, 438, 471
HpyF10VI	GCNNNNNNNGC	4 cut(s)	11, 139, 187, 555
HpySE526I	ACGT	1 cut(s)	128
Hsp92II	CATG	4 cut(s)	66, 391, 508, 564
Ksp22I	TGATCA	1 cut(s)	73
Kzo9I	GATC	2 cut(s)	73, 97
Lsp1109I	GCAGC	1 cut(s)	413
MaeI	CTAG	1 cut(s)	54
MaeII	ACGT	1 cut(s)	128
MaeIII	GTNAC	2 cut(s)	223, 254
MalI	GATC	2 cut(s)	75, 99
MboI	GATC	2 cut(s)	73, 97
MboII	GAAGA	2 cut(s)	103, 442
MhlI	GDGCHC	3 cut(s)	235, 331, 560
MnlI	CCTC	4 cut(s)	43, 226, 322, 399
MseI	TTAA	1 cut(s)	275
MslI	CAYNNNNRTG	3 cut(s)	14, 503, 533
MspI	CCGG	3 cut(s)	221, 466, 485
MspR9I	CCNGG	1 cut(s)	486
Mva1269I	GAATGC	1 cut(s)	297
MwoI	GCNNNNNNNGC	4 cut(s)	11, 139, 187, 555
NciI	CCSGG	1 cut(s)	486
NdeII	GATC	2 cut(s)	73, 97
NlaIII	CATG	4 cut(s)	66, 391, 508, 564
NlaIV	GGNNCC	1 cut(s)	499
NmuCI	GTSAC	2 cut(s)	223, 254
NspI	RCATGY	1 cut(s)	391
PaeI	GCATGC	1 cut(s)	391
PaqCI	CACCTGC	1 cut(s)	256
PctI	GAATGC	1 cut(s)	297
PfeI	GAWTC	1 cut(s)	164
PkrI	GCNGC	1 cut(s)	403
Ppu21I	YACGTR	1 cut(s)	129
PspEI	GGTNACC	1 cut(s)	223
PspN4I	GGNNCC	1 cut(s)	499
RsaI	GTAC	1 cut(s)	127
RsaNI	GTAC	1 cut(s)	126
RseI	CAYNNNNRTG	3 cut(s)	14, 503, 533
SaqAI	TTAA	1 cut(s)	275
SatI	GCNGC	1 cut(s)	402
Sau3AI	GATC	2 cut(s)	73, 97
ScrFI	CCNGG	1 cut(s)	486
SduI	GDGCHC	3 cut(s)	235, 331, 560
SetI	ASST	6 cut(s)	16, 131, 163, 230, 250, 410
SfcI	CTRYAG	1 cut(s)	460
SmiMI	CAYNNNNRTG	3 cut(s)	14, 503, 533
SphI	GCATGC	1 cut(s)	391
SsiI	CCGC	3 cut(s)	140, 173, 482
SspMI	CTAG	1 cut(s)	54
StyD4I	CCNGG	1 cut(s)	484
TaaI	ACNGT	1 cut(s)	210
TaiI	ACGT	1 cut(s)	131
TfiI	GAWTC	1 cut(s)	164
Tru1I	TTAA	1 cut(s)	275
Tru9I	TTAA	1 cut(s)	275
TscAI	CASTG	1 cut(s)	535
TseFI	GTSAC	2 cut(s)	223, 254
TseI	GCWGC	1 cut(s)	401
Tsp45I	GTSAC	2 cut(s)	223, 254
TspDTI	ATGAA	1 cut(s)	467
TspRI	CASTG	1 cut(s)	535
VneI	GTGCAC	2 cut(s)	231, 327
XceI	RCATGY	1 cut(s)	391
XspI	CTAG	1 cut(s)	54

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.