AT5G01870

Plant non-specific lipid-transfer proteins transfer phospholipids as well as galactolipids across membranes. May play a role in wax or cutin deposition in the cell walls of expanding epidermal cells and certain secretory tissues

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0005488
Physical Location & Seq
Forward (+)
337128 .. 337914
787 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G01870.1

Sequence Viewer

Length: 351 bp
ATGATGAGAGTTGTGTTACCACTATGCCTGCTTCTTGCTTCCATATTTGCATGGGGTTCTGAAGCAGCCATATCTTGCAACGCCGTACAGGCCAACCTTTACCCGTGCGTTGTGTACGTGGTGCAGGGAGGAGCCATTCCGTATAGCTGTTGCAATGGCATCAGGATGCTCAGCAAACAGGCAACTAGCGCATCAGACAAACAAGGTGTGTGTCGCTGCATCAAGTCTGTGGTGGGAAGAGTGTCTTACTCGTCAATCTATCTCAAGAAAGCTGCTGCTTTGCCAGGCAAGTGCGGTGTCAAACTTCCTTACAAGATCGACCCTTCCACCAACTGCAACAGCATTAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LTP_2 Tryp_alpha_amyl

Protein Analysis

116

Amino Acids

12.33

Weight (kDa)

9.35

Isoelectric Point (pI)

18.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Tryp_alpha_amyl PF00234 26 - 112 1.1e-09 Protease inhibitor/seed storage/LTP family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 294
AcuI CTGAAG 1 cut(s) 81
AfaI GTAC 2 cut(s) 87, 116
AjnI CCWGG 1 cut(s) 283
AluBI AGCT 2 cut(s) 147, 272
AluI AGCT 2 cut(s) 147, 272
AoxI GGCC 1 cut(s) 90
ApeKI GCWGC 4 cut(s) 65, 216, 272, 275
AspLEI GCGC 1 cut(s) 191
BbvI GCAGC 4 cut(s) 77, 203, 259, 262
BceAI ACGGC 1 cut(s) 68
BciT130I CCWGG 1 cut(s) 285
BfaI CTAG 1 cut(s) 186
BglI GCCNNNNNGGC 1 cut(s) 89
BisI GCNGC 4 cut(s) 66, 217, 273, 276
BlpI GCTNAGC 1 cut(s) 170
BlsI GCNGC 4 cut(s) 67, 218, 274, 277
Bme1390I CCNGG 1 cut(s) 285
BmiI GGNNCC 1 cut(s) 133
BmrFI CCNGG 1 cut(s) 285
BmsI GCATC 4 cut(s) 156, 168, 200, 228
Bpu1102I GCTNAGC 1 cut(s) 170
BpuEI CTTGAG 1 cut(s) 248
BsaAI YACGTR 1 cut(s) 118
Bse3DI GCAATG 1 cut(s) 160
BseBI CCWGG 1 cut(s) 285
BseGI GGATG 1 cut(s) 171
BseMI GCAATG 1 cut(s) 160
BseMII CTCAG 1 cut(s) 184
BseRI GAGGAG 1 cut(s) 144
BseXI GCAGC 4 cut(s) 77, 203, 259, 262
BsgI GTGCAG 1 cut(s) 143
BshFI GGCC 1 cut(s) 92
BsnI GGCC 1 cut(s) 92
Bsp143I GATC 1 cut(s) 315
Bsp1720I GCTNAGC 1 cut(s) 170
BspACI CCGC 1 cut(s) 294
BspANI GGCC 1 cut(s) 92
BspCNI CTCAG 1 cut(s) 183
BspLI GGNNCC 1 cut(s) 133
BsrDI GCAATG 1 cut(s) 160
BssMI GATC 1 cut(s) 315
Bst2UI CCWGG 1 cut(s) 285
Bst6I CTCTTC 1 cut(s) 232
BstBAI YACGTR 1 cut(s) 118
BstC8I GCNNGC 1 cut(s) 29
BstDEI CTNAG 1 cut(s) 170
BstF5I GGATG 1 cut(s) 171
BstHHI GCGC 1 cut(s) 191
BstKTI GATC 1 cut(s) 318
BstMBI GATC 1 cut(s) 315
BstMWI GCNNNNNNNGC 2 cut(s) 89, 188
BstNI CCWGG 1 cut(s) 285
BstSCI CCNGG 1 cut(s) 283
BstV1I GCAGC 4 cut(s) 77, 203, 259, 262
BsuRI GGCC 1 cut(s) 92
BtsCI GGATG 1 cut(s) 171
Cac8I GCNNGC 1 cut(s) 29
CfoI GCGC 1 cut(s) 191
Csp6I GTAC 2 cut(s) 86, 115
CviAII CATG 1 cut(s) 51
CviJI RGCY 5 cut(s) 68, 92, 134, 147, 272
CviKI_1 RGCY 5 cut(s) 68, 92, 134, 147, 272
CviQI GTAC 2 cut(s) 86, 115
DdeI CTNAG 1 cut(s) 170
DpnI GATC 1 cut(s) 317
DpnII GATC 1 cut(s) 315
Eam1104I CTCTTC 1 cut(s) 232
EarI CTCTTC 1 cut(s) 232
Eco57I CTGAAG 1 cut(s) 81
EcoRII CCWGG 1 cut(s) 283
FaeI CATG 1 cut(s) 54
FaiI YATR 5 cut(s) 25, 44, 52, 71, 144
FalI AAGNNNNNCTT 2 cut(s) 229, 261
FatI CATG 1 cut(s) 50
Fnu4HI GCNGC 4 cut(s) 66, 217, 273, 276
FokI GGATG 1 cut(s) 178
Fsp4HI GCNGC 4 cut(s) 66, 217, 273, 276
FspBI CTAG 1 cut(s) 186
GlaI GCGC 1 cut(s) 190
GluI GCNGC 4 cut(s) 66, 217, 273, 276
HaeIII GGCC 1 cut(s) 92
HhaI GCGC 1 cut(s) 191
Hin1II CATG 1 cut(s) 54
Hin6I GCGC 1 cut(s) 189
HinP1I GCGC 1 cut(s) 189
Hpy166II GTNNAC 1 cut(s) 115
Hpy188I TCNGA 2 cut(s) 61, 196
Hpy188III TCNNGA 2 cut(s) 163, 265
Hpy8I GTNNAC 1 cut(s) 115
HpyAV CCTTC 1 cut(s) 333
HpyCH4IV ACGT 1 cut(s) 117
HpyCH4V TGCA 6 cut(s) 50, 78, 124, 153, 219, 336
HpyF10VI GCNNNNNNNGC 2 cut(s) 89, 188
HpyF3I CTNAG 1 cut(s) 170
HpySE526I ACGT 1 cut(s) 117
Hsp92II CATG 1 cut(s) 54
HspAI GCGC 1 cut(s) 189
Kzo9I GATC 1 cut(s) 315
LmnI GCTCC 1 cut(s) 131
LpnPI CCDG 7 cut(s) 41, 74, 110, 148, 164, 270, 297
Lsp1109I GCAGC 4 cut(s) 77, 203, 259, 262
LweI GCATC 4 cut(s) 156, 168, 200, 228
MaeI CTAG 1 cut(s) 186
MaeII ACGT 1 cut(s) 117
MaeIII GTNAC 1 cut(s) 15
MalI GATC 1 cut(s) 317
MboI GATC 1 cut(s) 315
MboII GAAGA 1 cut(s) 249
MnlI CCTC 1 cut(s) 122
MseI TTAA 1 cut(s) 345
MslI CAYNNNNRTG 1 cut(s) 164
MspR9I CCNGG 1 cut(s) 285
MvaI CCWGG 1 cut(s) 285
MwoI GCNNNNNNNGC 2 cut(s) 89, 188
NdeII GATC 1 cut(s) 315
NlaIII CATG 1 cut(s) 54
NlaIV GGNNCC 1 cut(s) 133
PkrI GCNGC 4 cut(s) 67, 218, 274, 277
Ppu21I YACGTR 1 cut(s) 118
Psp6I CCWGG 1 cut(s) 283
PspGI CCWGG 1 cut(s) 283
PspN4I GGNNCC 1 cut(s) 133
RsaI GTAC 2 cut(s) 87, 116
RsaNI GTAC 2 cut(s) 86, 115
RseI CAYNNNNRTG 1 cut(s) 164
SaqAI TTAA 1 cut(s) 345
SatI GCNGC 4 cut(s) 66, 217, 273, 276
Sau3AI GATC 1 cut(s) 315
ScrFI CCNGG 1 cut(s) 285
SetI ASST 5 cut(s) 99, 120, 149, 208, 274
SfaNI GCATC 4 cut(s) 156, 168, 200, 228
SmiMI CAYNNNNRTG 1 cut(s) 164
SmlI CTYRAG 1 cut(s) 263
SmoI CTYRAG 1 cut(s) 263
SsiI CCGC 1 cut(s) 294
SspMI CTAG 1 cut(s) 186
StyD4I CCNGG 1 cut(s) 283
TaiI ACGT 1 cut(s) 120
TaqI TCGA 1 cut(s) 318
Tru1I TTAA 1 cut(s) 345
Tru9I TTAA 1 cut(s) 345
TseI GCWGC 4 cut(s) 65, 216, 272, 275
TspGWI ACGGA 1 cut(s) 129
XspI CTAG 1 cut(s) 186
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.