Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001256.1

Orthogroup ID

OG0005488

Physical Location & Seq

Genomic Coordinates Reverse (-)

8486 .. 13064

Gene Structure 4579 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001256.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

atggcttgctctagggcttttattctactctgcgtggtggtggtgtccatggtggcactgttgttaggcggagcccaagcaaccataacctgcagtcaggtggtgaacgggctgacgccgtgcattccctacttggaaaaaggtgggacacctgcctcaggttgctgcagcgggatcaagaccctctacagcacggcacacaccaccgctgacctccagggcgtttgtaactgtttgaaagaaaaattcagcagtattcactacagcagcaataacgtccgctttgctgctgggcttcctgccaagtgcgggatcaaaattccgtacaagatcagcccctccaccaactgcaaaaggtttggatttagagagagagagagaagaggggagaaacctctagatctagatctaaacgaggaggcggcgcgtgcagatttcagagccacggggcaagaagtcgcggcctacaagggcctcgagcacactggacttgctgctactctggctgccgacaacggcgacctgagggagctcgatggtggattgggaaccgagctgcgcgaagatgtcctggagcttgttcactatggggatcacggagtttccgaggggcgaattggaggatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0006810 GO:0006869 GO:0008150 GO:0010876 GO:0016020 GO:0033036 GO:0051179 GO:0051234 GO:0071702

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LTP_2 Tryp_alpha_amyl

Protein Analysis

208

Amino Acids

22.07

Weight (kDa)

6.51

Isoelectric Point (pI)

29.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005488)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G01870
fragaria_vesca	FvH4_6g09960 FvH4_7g28420
malus_domestica	MD04G1174000.v1.1 MD12G1187600.v1.1
prunus_persica	Prupe.6G293000_v2.0.a1
pyrus_communis	pycom04g15360 pycom12g17560
rosa_chinensis	RchiOBHm_Chr3g0460541 RchiOBHm_Chr3g0460571
rosa_laevigata	RLG00000024995 RLG00000031904
rosa_multiflora	Rmu_co8040472.1_g000001 Rmu_sc0001256.1_g000003 Rmu_sc0003701.1_g000004 Rmu_sc0006046.1_g000007
rosa_roxburghii	Rroxscaffold_6G00419360 Rroxscaffold_6G00419390
rosa_rugosa	Rorug03G0043600 Rorug03G0043900
rosa_samantha	Rh3AG101600 Rh3AG102100 Rh3BG105600 Rh3BG105800 Rh3CG107400 Rh3DG107000 Rh3DG107200
rosa_wichuraiana	Rw3G008650 Rw3G008670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	160
Acc36I	ACCTGC	2 cut(s)	98, 160
AccII	CGCG	3 cut(s)	427, 461, 561
AciI	CCGC	7 cut(s)	69, 171, 207, 280, 309, 422, 461
AclWI	GGATC	3 cut(s)	182, 320, 600
AcsI	RAATTY	2 cut(s)	245, 318
AcyI	GRCGYC	1 cut(s)	116
AfaI	GTAC	1 cut(s)	326
AfiI	CCNNNNNNNGG	2 cut(s)	158, 309
AgsI	TTSAA	1 cut(s)	238
AjnI	CCWGG	2 cut(s)	216, 570
AluBI	AGCT	3 cut(s)	532, 556, 577
AluI	AGCT	3 cut(s)	532, 556, 577
Alw21I	GWGCWC	2 cut(s)	483, 534
AlwI	GGATC	3 cut(s)	182, 320, 600
Ama87I	CYCGRG	1 cut(s)	476
AoxI	GGCC	2 cut(s)	462, 472
ApeKI	GCWGC	7 cut(s)	165, 168, 267, 287, 494, 506, 556
ApoI	RAATTY	2 cut(s)	245, 318
AspLEI	GCGC	2 cut(s)	427, 561
AspS9I	GGNCC	1 cut(s)	472
AsuHPI	GGTGA	1 cut(s)	115
AvaI	CYCGRG	1 cut(s)	476
AxyI	CCTNAGG	2 cut(s)	157, 524
BanII	GRGCYC	2 cut(s)	76, 534
Bbv12I	GWGCWC	2 cut(s)	483, 534
BbvI	GCAGC	7 cut(s)	152, 180, 274, 279, 481, 493, 543
BccI	CCATC	1 cut(s)	530
BceAI	ACGGC	3 cut(s)	103, 210, 532
BciT130I	CCWGG	2 cut(s)	218, 572
BfaI	CTAG	3 cut(s)	12, 398, 404
BfmI	CTRYAG	4 cut(s)	91, 166, 187, 262
BfuAI	ACCTGC	2 cut(s)	98, 160
BglII	AGATCT	2 cut(s)	400, 406
BisI	GCNGC	9 cut(s)	166, 169, 268, 288, 423, 462, 495, 507, 557
BlsI	GCNGC	9 cut(s)	167, 170, 269, 289, 424, 463, 496, 508, 558
Bme1390I	CCNGG	2 cut(s)	218, 572
BmeT110I	CYCGRG	1 cut(s)	476
BmgT120I	GGNCC	1 cut(s)	472
BmiI	GGNNCC	2 cut(s)	73, 550
BmrFI	CCNGG	2 cut(s)	218, 572
BpmI	CTGGAG	2 cut(s)	200, 593
BsaBI	GATNNNNATC	1 cut(s)	405
BsaHI	GRCGYC	1 cut(s)	116
BsaJI	CCNNGG	4 cut(s)	48, 217, 444, 606
Bsc4I	CCNNNNNNNGG	2 cut(s)	158, 309
Bse1I	ACTGG	1 cut(s)	490
Bse21I	CCTNAGG	2 cut(s)	157, 524
Bse8I	GATNNNNATC	1 cut(s)	405
BseBI	CCWGG	2 cut(s)	218, 572
BseDI	CCNNGG	4 cut(s)	48, 217, 444, 606
BseJI	GATNNNNATC	1 cut(s)	405
BseLI	CCNNNNNNNGG	2 cut(s)	158, 309
BseMII	CTCAG	2 cut(s)	171, 515
BseNI	ACTGG	1 cut(s)	490
BseRI	GAGGAG	1 cut(s)	431
BseXI	GCAGC	7 cut(s)	152, 180, 274, 279, 481, 493, 543
BseYI	CCCAGC	1 cut(s)	290
BsgI	GTGCAG	1 cut(s)	450
Bsh1236I	CGCG	3 cut(s)	427, 461, 561
BshFI	GGCC	2 cut(s)	464, 474
BsiHKAI	GWGCWC	2 cut(s)	483, 534
BsiHKCI	CYCGRG	1 cut(s)	476
BslFI	GGGAC	1 cut(s)	160
BslI	CCNNNNNNNGG	2 cut(s)	158, 309
BsmFI	GGGAC	1 cut(s)	160
BsmI	GAATGC	1 cut(s)	123
BsnI	GGCC	2 cut(s)	464, 474
BsoBI	CYCGRG	1 cut(s)	476
Bsp1286I	GDGCHC	3 cut(s)	76, 483, 534
Bsp143I	GATC	6 cut(s)	174, 312, 330, 400, 406, 592
Bsp19I	CCATGG	1 cut(s)	48
BspACI	CCGC	7 cut(s)	69, 171, 207, 280, 309, 422, 461
BspANI	GGCC	2 cut(s)	464, 474
BspCNI	CTCAG	2 cut(s)	170, 516
BspFNI	CGCG	3 cut(s)	427, 461, 561
BspLI	GGNNCC	2 cut(s)	73, 550
BspMAI	CTGCAG	2 cut(s)	95, 170
BspMI	ACCTGC	2 cut(s)	98, 160
BspPI	GGATC	3 cut(s)	182, 320, 600
BsrI	ACTGG	1 cut(s)	490
BssECI	CCNNGG	4 cut(s)	48, 217, 444, 606
BssMI	GATC	6 cut(s)	174, 312, 330, 400, 406, 592
BssNI	GRCGYC	1 cut(s)	116
BssT1I	CCWWGG	1 cut(s)	48
Bst2UI	CCWGG	2 cut(s)	218, 572
Bst4CI	ACNGT	2 cut(s)	60, 233
Bst6I	CTCTTC	1 cut(s)	376
BstACI	GRCGYC	1 cut(s)	116
BstC8I	GCNNGC	2 cut(s)	7, 429
BstDEI	CTNAG	2 cut(s)	157, 524
BstDSI	CCRYGG	2 cut(s)	48, 444
BstENI	CCTNNNNNAGG	1 cut(s)	156
BstFNI	CGCG	3 cut(s)	427, 461, 561
BstHHI	GCGC	2 cut(s)	427, 561
BstKTI	GATC	6 cut(s)	177, 315, 333, 403, 409, 595
BstMBI	GATC	6 cut(s)	174, 312, 330, 400, 406, 592
BstMWI	GCNNNNNNNGC	2 cut(s)	428, 503
BstNI	CCWGG	2 cut(s)	218, 572
BstSCI	CCNGG	2 cut(s)	216, 570
BstSFI	CTRYAG	4 cut(s)	91, 166, 187, 262
BstUI	CGCG	3 cut(s)	427, 461, 561
BstV1I	GCAGC	7 cut(s)	152, 180, 274, 279, 481, 493, 543
BstX2I	RGATCY	2 cut(s)	400, 406
BstYI	RGATCY	2 cut(s)	400, 406
Bsu36I	CCTNAGG	2 cut(s)	157, 524
BsuRI	GGCC	2 cut(s)	464, 474
BtgI	CCRYGG	2 cut(s)	48, 444
BtsIMutI	CAGTG	2 cut(s)	56, 483
BveI	ACCTGC	2 cut(s)	98, 160
Cac8I	GCNNGC	2 cut(s)	7, 429
CfoI	GCGC	2 cut(s)	427, 561
Cfr13I	GGNCC	1 cut(s)	472
CseI	GACGC	1 cut(s)	124
Csp6I	GTAC	1 cut(s)	325
CviAII	CATG	1 cut(s)	49
CviQI	GTAC	1 cut(s)	325
DdeI	CTNAG	2 cut(s)	157, 524
DpnI	GATC	6 cut(s)	176, 314, 332, 402, 408, 594
DpnII	GATC	6 cut(s)	174, 312, 330, 400, 406, 592
Eam1104I	CTCTTC	1 cut(s)	376
EarI	CTCTTC	1 cut(s)	376
EciI	GGCGGA	1 cut(s)	84
Ecl136II	GAGCTC	1 cut(s)	532
Eco130I	CCWWGG	1 cut(s)	48
Eco24I	GRGCYC	2 cut(s)	76, 534
Eco53kI	GAGCTC	1 cut(s)	532
Eco81I	CCTNAGG	2 cut(s)	157, 524
Eco88I	CYCGRG	1 cut(s)	476
EcoICRI	GAGCTC	1 cut(s)	532
EcoNI	CCTNNNNNAGG	1 cut(s)	156
EcoO109I	RGGNCCY	1 cut(s)	472
EcoRII	CCWGG	2 cut(s)	216, 570
EcoT14I	CCWWGG	1 cut(s)	48
EcoT38I	GRGCYC	2 cut(s)	76, 534
ErhI	CCWWGG	1 cut(s)	48
FaeI	CATG	1 cut(s)	52
FaiI	YATR	3 cut(s)	50, 86, 588
FaqI	GGGAC	1 cut(s)	160
FatI	CATG	1 cut(s)	48
FauI	CCCGC	2 cut(s)	164, 302
Fnu4HI	GCNGC	9 cut(s)	166, 169, 268, 288, 423, 462, 495, 507, 557
FriOI	GRGCYC	2 cut(s)	76, 534
Fsp4HI	GCNGC	9 cut(s)	166, 169, 268, 288, 423, 462, 495, 507, 557
FspBI	CTAG	3 cut(s)	12, 398, 404
GlaI	GCGC	2 cut(s)	426, 560
GluI	GCNGC	9 cut(s)	166, 169, 268, 288, 423, 462, 495, 507, 557
GsaI	CCCAGC	1 cut(s)	294
GsuI	CTGGAG	2 cut(s)	200, 593
HaeIII	GGCC	2 cut(s)	464, 474
HgaI	GACGC	1 cut(s)	124
HhaI	GCGC	2 cut(s)	427, 561
Hin1I	GRCGYC	1 cut(s)	116
Hin1II	CATG	1 cut(s)	52
Hin6I	GCGC	2 cut(s)	425, 559
HinP1I	GCGC	2 cut(s)	425, 559
HphI	GGTGA	1 cut(s)	115
Hpy166II	GTNNAC	2 cut(s)	106, 583
Hpy188I	TCNGA	2 cut(s)	440, 607
Hpy188III	TCNNGA	3 cut(s)	178, 398, 404
Hpy8I	GTNNAC	2 cut(s)	106, 583
HpyCH4III	ACNGT	2 cut(s)	60, 233
HpyCH4IV	ACGT	1 cut(s)	276
HpyCH4V	TGCA	5 cut(s)	93, 123, 168, 351, 431
HpyF10VI	GCNNNNNNNGC	2 cut(s)	428, 503
HpyF3I	CTNAG	2 cut(s)	157, 524
HpySE526I	ACGT	1 cut(s)	276
Hsp92I	GRCGYC	1 cut(s)	116
Hsp92II	CATG	1 cut(s)	52
HspAI	GCGC	2 cut(s)	425, 559
Kzo9I	GATC	6 cut(s)	174, 312, 330, 400, 406, 592
LmnI	GCTCC	3 cut(s)	71, 529, 574
Lsp1109I	GCAGC	7 cut(s)	152, 180, 274, 279, 481, 493, 543
MaeI	CTAG	3 cut(s)	12, 398, 404
MaeII	ACGT	1 cut(s)	276
MaeIII	GTNAC	1 cut(s)	227
MalI	GATC	6 cut(s)	176, 314, 332, 402, 408, 594
MboI	GATC	6 cut(s)	174, 312, 330, 400, 406, 592
MboII	GAAGA	2 cut(s)	393, 575
MflI	RGATCY	2 cut(s)	400, 406
MhlI	GDGCHC	3 cut(s)	76, 483, 534
MluCI	AATT	3 cut(s)	245, 318, 615
MspA1I	CMGCKG	2 cut(s)	171, 209
MspR9I	CCNGG	2 cut(s)	218, 572
Mva1269I	GAATGC	1 cut(s)	123
MvaI	CCWGG	2 cut(s)	218, 572
MvnI	CGCG	3 cut(s)	427, 461, 561
MwoI	GCNNNNNNNGC	2 cut(s)	428, 503
NcoI	CCATGG	1 cut(s)	48
NdeII	GATC	6 cut(s)	174, 312, 330, 400, 406, 592
NlaIII	CATG	1 cut(s)	52
NlaIV	GGNNCC	2 cut(s)	73, 550
PaeR7I	CTCGAG	1 cut(s)	476
PaqCI	CACCTGC	1 cut(s)	160
PcsI	WCGNNNNNNNCGW	1 cut(s)	603
PctI	GAATGC	1 cut(s)	123
PfoI	TCCNGGA	1 cut(s)	570
PkrI	GCNGC	9 cut(s)	167, 170, 269, 289, 424, 463, 496, 508, 558
Psp124BI	GAGCTC	1 cut(s)	534
Psp6I	CCWGG	2 cut(s)	216, 570
PspFI	CCCAGC	1 cut(s)	290
PspGI	CCWGG	2 cut(s)	216, 570
PspN4I	GGNNCC	2 cut(s)	73, 550
PspPI	GGNCC	1 cut(s)	472
PspXI	VCTCGAGB	1 cut(s)	476
PstI	CTGCAG	2 cut(s)	95, 170
PsuI	RGATCY	2 cut(s)	400, 406
RsaI	GTAC	1 cut(s)	326
RsaNI	GTAC	1 cut(s)	325
SacI	GAGCTC	1 cut(s)	534
SatI	GCNGC	9 cut(s)	166, 169, 268, 288, 423, 462, 495, 507, 557
Sau3AI	GATC	6 cut(s)	174, 312, 330, 400, 406, 592
Sau96I	GGNCC	1 cut(s)	472
ScrFI	CCNGG	2 cut(s)	218, 572
SduI	GDGCHC	3 cut(s)	76, 483, 534
SfcI	CTRYAG	4 cut(s)	91, 166, 187, 262
Sfr274I	CTCGAG	1 cut(s)	476
SlaI	CTCGAG	1 cut(s)	476
SmlI	CTYRAG	1 cut(s)	476
SmoI	CTYRAG	1 cut(s)	476
Sse9I	AATT	3 cut(s)	245, 318, 615
SsiI	CCGC	7 cut(s)	69, 171, 207, 280, 309, 422, 461
SspMI	CTAG	3 cut(s)	12, 398, 404
SstI	GAGCTC	1 cut(s)	534
StyD4I	CCNGG	2 cut(s)	216, 570
StyI	CCWWGG	1 cut(s)	48
TaaI	ACNGT	2 cut(s)	60, 233
TaiI	ACGT	1 cut(s)	279
TaqI	TCGA	2 cut(s)	477, 534
TasI	AATT	3 cut(s)	245, 318, 615
TauI	GCSGC	2 cut(s)	425, 464
TscAI	CASTG	2 cut(s)	63, 490
TseI	GCWGC	7 cut(s)	165, 168, 267, 287, 494, 506, 556
TspGWI	ACGGA	2 cut(s)	312, 612
TspRI	CASTG	2 cut(s)	63, 490
XagI	CCTNNNNNAGG	1 cut(s)	156
XapI	RAATTY	2 cut(s)	245, 318
XbaI	TCTAGA	2 cut(s)	397, 403
XhoI	CTCGAG	1 cut(s)	476
XspI	CTAG	3 cut(s)	12, 398, 404

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.