Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0005488

Physical Location & Seq

Genomic Coordinates Forward (+)

26571638 .. 26572743

Gene Structure 1106 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1174000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 372 bp

ATGGCTAGCTCTGGACAGCTCCTTAAGCTTGCATGCTTGGTGGTGGTGATGTTCTGCATGGTGGCTGGTGCCCCCAAAGCCGAGGCAGCTGTGACATGCGGTCAGGTGGTGAACAGCCTGGTTCCATGCCTTAGCTACGTGACGAACGGCGGGGCACTGAACCCCGCTTGCTGCAACGGGGTGAAGACCCTCTACAACCTGGCTCAAACCACCCCTGACCGCCAGAACGTCTGCAACTGCTTGAAGCAAGCAATCAATGGAATACCTTACACCAATACCAACGCTGGCCTTGCTGCTGGCCTTCCTGCCAGGTGTGGTGTCAACATTCCGTACAAGATCAGCCCCTCTACTGACTGCAAAAGTGTGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0006810 GO:0006869 GO:0008150 GO:0010876 GO:0016020 GO:0033036 GO:0051179 GO:0051234 GO:0071702

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LTP_2 Tryp_alpha_amyl

Protein Analysis

124

Amino Acids

12.64

Weight (kDa)

8.87

Isoelectric Point (pI)

29.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LTP_2	PF14368	14 - 111	2.4e-06	Probable lipid transfer
Tryp_alpha_amyl	PF00234	33 - 119	1.1e-14	Protease inhibitor/seed storage/LTP family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0005488)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G01870
fragaria_vesca	FvH4_6g09960 FvH4_7g28420
malus_domestica	MD04G1174000.v1.1 MD12G1187600.v1.1
prunus_persica	Prupe.6G293000_v2.0.a1
pyrus_communis	pycom04g15360 pycom12g17560
rosa_chinensis	RchiOBHm_Chr3g0460541 RchiOBHm_Chr3g0460571
rosa_laevigata	RLG00000024995 RLG00000031904
rosa_multiflora	Rmu_co8040472.1_g000001 Rmu_sc0001256.1_g000003 Rmu_sc0003701.1_g000004 Rmu_sc0006046.1_g000007
rosa_roxburghii	Rroxscaffold_6G00419360 Rroxscaffold_6G00419390
rosa_rugosa	Rorug03G0043600 Rorug03G0043900
rosa_samantha	Rh3AG101600 Rh3AG102100 Rh3BG105600 Rh3BG105800 Rh3CG107400 Rh3DG107000 Rh3DG107200
rosa_wichuraiana	Rw3G008650 Rw3G008670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	68
AciI	CCGC	4 cut(s)	99, 150, 165, 220
AfaI	GTAC	1 cut(s)	332
AflII	CTTAAG	1 cut(s)	23
AgsI	TTSAA	1 cut(s)	244
AhdI	GACNNNNNGTC	1 cut(s)	99
AjnI	CCWGG	3 cut(s)	117, 198, 308
AluBI	AGCT	5 cut(s)	9, 19, 28, 89, 135
AluI	AGCT	5 cut(s)	9, 19, 28, 89, 135
AoxI	GGCC	2 cut(s)	286, 298
ApeKI	GCWGC	3 cut(s)	86, 171, 293
AsuHPI	GGTGA	3 cut(s)	58, 121, 193
AsuNHI	GCTAGC	1 cut(s)	5
BaeGI	GKGCMC	2 cut(s)	73, 157
BanI	GGYRCC	1 cut(s)	68
BarI	GAAGNNNNNNTAC	2 cut(s)	176, 208
BbsI	GAAGAC	1 cut(s)	191
BbvI	GCAGC	3 cut(s)	98, 158, 280
BceAI	ACGGC	1 cut(s)	163
BciT130I	CCWGG	3 cut(s)	119, 200, 310
BfaI	CTAG	1 cut(s)	6
BfrI	CTTAAG	1 cut(s)	23
BisI	GCNGC	3 cut(s)	87, 172, 294
BlsI	GCNGC	3 cut(s)	88, 173, 295
Bme1390I	CCNGG	3 cut(s)	119, 200, 310
BmeRI	GACNNNNNGTC	1 cut(s)	99
BmiI	GGNNCC	2 cut(s)	70, 123
BmrFI	CCNGG	3 cut(s)	119, 200, 310
BmtI	GCTAGC	1 cut(s)	9
BpiI	GAAGAC	1 cut(s)	191
Bpu10I	CCTNAGC	1 cut(s)	131
BsaAI	YACGTR	1 cut(s)	139
BsaJI	CCNNGG	1 cut(s)	81
BseBI	CCWGG	3 cut(s)	119, 200, 310
BseDI	CCNNGG	1 cut(s)	81
BseSI	GKGCMC	2 cut(s)	73, 157
BseXI	GCAGC	3 cut(s)	98, 158, 280
BshFI	GGCC	2 cut(s)	288, 300
BshNI	GGYRCC	1 cut(s)	68
BsnI	GGCC	2 cut(s)	288, 300
Bsp1286I	GDGCHC	2 cut(s)	73, 157
Bsp143I	GATC	1 cut(s)	336
BspACI	CCGC	4 cut(s)	99, 150, 165, 220
BspANI	GGCC	2 cut(s)	288, 300
BspLI	GGNNCC	2 cut(s)	70, 123
BspOI	GCTAGC	1 cut(s)	9
BspT107I	GGYRCC	1 cut(s)	68
BspTI	CTTAAG	1 cut(s)	23
BssECI	CCNNGG	1 cut(s)	81
BssMI	GATC	1 cut(s)	336
Bst2UI	CCWGG	3 cut(s)	119, 200, 310
BstAFI	CTTAAG	1 cut(s)	23
BstBAI	YACGTR	1 cut(s)	139
BstC8I	GCNNGC	7 cut(s)	7, 30, 34, 169, 249, 286, 298
BstDEI	CTNAG	1 cut(s)	131
BstKTI	GATC	1 cut(s)	339
BstMBI	GATC	1 cut(s)	336
BstMWI	GCNNNNNNNGC	4 cut(s)	25, 77, 86, 290
BstNI	CCWGG	3 cut(s)	119, 200, 310
BstNSI	RCATGY	2 cut(s)	36, 99
BstSCI	CCNGG	3 cut(s)	117, 198, 308
BstSLI	GKGCMC	2 cut(s)	73, 157
BstV1I	GCAGC	3 cut(s)	98, 158, 280
BstV2I	GAAGAC	1 cut(s)	191
BsuRI	GGCC	2 cut(s)	288, 300
BtsIMutI	CAGTG	1 cut(s)	155
Cac8I	GCNNGC	7 cut(s)	7, 30, 34, 169, 249, 286, 298
Csp6I	GTAC	1 cut(s)	331
CviAII	CATG	4 cut(s)	33, 58, 96, 126
CviQI	GTAC	1 cut(s)	331
DdeI	CTNAG	1 cut(s)	131
DpnI	GATC	1 cut(s)	338
DpnII	GATC	1 cut(s)	336
DriI	GACNNNNNGTC	1 cut(s)	99
Eam1105I	GACNNNNNGTC	1 cut(s)	99
EcoRII	CCWGG	3 cut(s)	117, 198, 308
FaeI	CATG	4 cut(s)	36, 61, 99, 129
FaiI	YATR	4 cut(s)	34, 59, 97, 127
FatI	CATG	4 cut(s)	32, 57, 95, 125
FauI	CCCGC	2 cut(s)	143, 172
Fnu4HI	GCNGC	3 cut(s)	87, 172, 294
Fsp4HI	GCNGC	3 cut(s)	87, 172, 294
FspBI	CTAG	1 cut(s)	6
GluI	GCNGC	3 cut(s)	87, 172, 294
HaeIII	GGCC	2 cut(s)	288, 300
Hin1II	CATG	4 cut(s)	36, 61, 99, 129
HincII	GTYRAC	1 cut(s)	322
HindII	GTYRAC	1 cut(s)	322
HindIII	AAGCTT	1 cut(s)	26
HphI	GGTGA	3 cut(s)	58, 121, 193
Hpy166II	GTNNAC	2 cut(s)	112, 322
Hpy188III	TCNNGA	1 cut(s)	12
Hpy8I	GTNNAC	2 cut(s)	112, 322
HpyAV	CCTTC	1 cut(s)	311
HpyCH4IV	ACGT	2 cut(s)	138, 228
HpyCH4V	TGCA	5 cut(s)	32, 57, 174, 234, 357
HpyF10VI	GCNNNNNNNGC	4 cut(s)	25, 77, 86, 290
HpyF3I	CTNAG	1 cut(s)	131
HpySE526I	ACGT	2 cut(s)	138, 228
Hsp92II	CATG	4 cut(s)	36, 61, 99, 129
Kzo9I	GATC	1 cut(s)	336
LmnI	GCTCC	1 cut(s)	24
Lsp1109I	GCAGC	3 cut(s)	98, 158, 280
MaeI	CTAG	1 cut(s)	6
MaeII	ACGT	2 cut(s)	138, 228
MaeIII	GTNAC	2 cut(s)	91, 139
MalI	GATC	1 cut(s)	338
MboI	GATC	1 cut(s)	336
MboII	GAAGA	1 cut(s)	196
MhlI	GDGCHC	2 cut(s)	73, 157
MnlI	CCTC	3 cut(s)	76, 200, 355
MseI	TTAA	1 cut(s)	24
MspA1I	CMGCKG	1 cut(s)	89
MspCI	CTTAAG	1 cut(s)	23
MspR9I	CCNGG	3 cut(s)	119, 200, 310
MvaI	CCWGG	3 cut(s)	119, 200, 310
MwoI	GCNNNNNNNGC	4 cut(s)	25, 77, 86, 290
NdeII	GATC	1 cut(s)	336
NheI	GCTAGC	1 cut(s)	5
NlaIII	CATG	4 cut(s)	36, 61, 99, 129
NlaIV	GGNNCC	2 cut(s)	70, 123
NmeAIII	GCCGAG	1 cut(s)	106
NmuCI	GTSAC	2 cut(s)	91, 139
NspI	RCATGY	2 cut(s)	36, 99
PaeI	GCATGC	1 cut(s)	36
PkrI	GCNGC	3 cut(s)	88, 173, 295
Ppu21I	YACGTR	1 cut(s)	139
Psp6I	CCWGG	3 cut(s)	117, 198, 308
PspGI	CCWGG	3 cut(s)	117, 198, 308
PspN4I	GGNNCC	2 cut(s)	70, 123
PvuII	CAGCTG	1 cut(s)	89
RsaI	GTAC	1 cut(s)	332
RsaNI	GTAC	1 cut(s)	331
SaqAI	TTAA	1 cut(s)	24
SatI	GCNGC	3 cut(s)	87, 172, 294
Sau3AI	GATC	1 cut(s)	336
ScrFI	CCNGG	3 cut(s)	119, 200, 310
SduI	GDGCHC	2 cut(s)	73, 157
SmlI	CTYRAG	1 cut(s)	23
SmoI	CTYRAG	1 cut(s)	23
SphI	GCATGC	1 cut(s)	36
SsiI	CCGC	4 cut(s)	99, 150, 165, 220
SspMI	CTAG	1 cut(s)	6
StyD4I	CCNGG	3 cut(s)	117, 198, 308
TaiI	ACGT	2 cut(s)	141, 231
Tru1I	TTAA	1 cut(s)	24
Tru9I	TTAA	1 cut(s)	24
TscAI	CASTG	1 cut(s)	162
TseFI	GTSAC	2 cut(s)	91, 139
TseI	GCWGC	3 cut(s)	86, 171, 293
Tsp45I	GTSAC	2 cut(s)	91, 139
TspGWI	ACGGA	1 cut(s)	318
TspRI	CASTG	1 cut(s)	162
Vha464I	CTTAAG	1 cut(s)	23
XceI	RCATGY	2 cut(s)	36, 99
XspI	CTAG	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.