Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0005488

Physical Location & Seq

Genomic Coordinates Reverse (-)

5909111 .. 5910089

Gene Structure 979 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g09960.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 369 bp

ATGGCGTTCTCTGGAGTTCAAAAGGTGGTGTTCTTGGTGGTGCTGTCCATGGCGGCAGCACTATCGATTGGTGGTGCCGAAGCAGCCCTTACGTGCGGTCAGGTGGTGAACAAGCTGATGCCTTGTGTTTCCTACGTCCAAAACGGTGGGACTCCCGCGGCGAATTGCTGCGGCGGGATCAGGGCCCTCTATGGCATGGCTCAAACCACCCCTGACCGCCAGAGCGTGTGCAACTGTTTGAAACAAGCAATCGCTGGGATTCCCTACACCGGAGCTAACGCCGGTCTTGCTGCAGGCCTTCCTGGCAAGTGTGGTGTCAACATTCCCTACAAGATCAACCCTTCTACTGACTGCAAAAGCATCAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0006810 GO:0006869 GO:0008150 GO:0010876 GO:0016020 GO:0033036 GO:0051179 GO:0051234 GO:0071702

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LTP_2 Tryp_alpha_amyl

Protein Analysis

123

Amino Acids

12.31

Weight (kDa)

9.0

Isoelectric Point (pI)

23.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LTP_2	PF14368	13 - 110	3.2e-07	Probable lipid transfer
Tryp_alpha_amyl	PF00234	32 - 118	8.1e-16	Protease inhibitor/seed storage/LTP family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005488)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G01870
fragaria_vesca	FvH4_6g09960 FvH4_7g28420
malus_domestica	MD04G1174000.v1.1 MD12G1187600.v1.1
prunus_persica	Prupe.6G293000_v2.0.a1
pyrus_communis	pycom04g15360 pycom12g17560
rosa_chinensis	RchiOBHm_Chr3g0460541 RchiOBHm_Chr3g0460571
rosa_laevigata	RLG00000024995 RLG00000031904
rosa_multiflora	Rmu_co8040472.1_g000001 Rmu_sc0001256.1_g000003 Rmu_sc0003701.1_g000004 Rmu_sc0006046.1_g000007
rosa_roxburghii	Rroxscaffold_6G00419360 Rroxscaffold_6G00419390
rosa_rugosa	Rorug03G0043600 Rorug03G0043900
rosa_samantha	Rh3AG101600 Rh3AG102100 Rh3BG105600 Rh3BG105800 Rh3CG107400 Rh3DG107000 Rh3DG107200
rosa_wichuraiana	Rw3G008650 Rw3G008670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	74
AccII	CGCG	1 cut(s)	158
AciI	CCGC	7 cut(s)	53, 96, 156, 158, 171, 174, 217
AclWI	GGATC	1 cut(s)	185
AfiI	CCNNNNNNNGG	1 cut(s)	269
AgsI	TTSAA	2 cut(s)	20, 241
AjnI	CCWGG	1 cut(s)	301
AluBI	AGCT	2 cut(s)	115, 275
AluI	AGCT	2 cut(s)	115, 275
AlwI	GGATC	1 cut(s)	185
AoxI	GGCC	2 cut(s)	183, 295
ApaI	GGGCCC	1 cut(s)	187
ApeKI	GCWGC	4 cut(s)	56, 83, 168, 290
AspS9I	GGNCC	2 cut(s)	183, 184
AsuHPI	GGTGA	1 cut(s)	118
BaeGI	GKGCMC	1 cut(s)	187
BanI	GGYRCC	1 cut(s)	74
BanII	GRGCYC	1 cut(s)	187
BbvI	GCAGC	4 cut(s)	68, 95, 155, 277
BcgI	CGANNNNNNTGC	2 cut(s)	45, 79
BciT130I	CCWGG	1 cut(s)	303
BfmI	CTRYAG	1 cut(s)	291
BglI	GCCNNNNNGGC	1 cut(s)	303
BisI	GCNGC	7 cut(s)	54, 57, 84, 159, 169, 172, 291
BlsI	GCNGC	7 cut(s)	55, 58, 85, 160, 170, 173, 292
Bme1390I	CCNGG	1 cut(s)	303
BmgT120I	GGNCC	2 cut(s)	183, 184
BmiI	GGNNCC	2 cut(s)	76, 185
BmrFI	CCNGG	1 cut(s)	303
BmsI	GCATC	1 cut(s)	108
BpmI	CTGGAG	1 cut(s)	33
Bsa29I	ATCGAT	1 cut(s)	65
BsaAI	YACGTR	1 cut(s)	93
BsaJI	CCNNGG	2 cut(s)	48, 156
BsaWI	WCCGGW	1 cut(s)	269
Bsc4I	CCNNNNNNNGG	1 cut(s)	269
Bse118I	RCCGGY	1 cut(s)	281
BseBI	CCWGG	1 cut(s)	303
BseCI	ATCGAT	1 cut(s)	65
BseDI	CCNNGG	2 cut(s)	48, 156
BseLI	CCNNNNNNNGG	1 cut(s)	269
BseSI	GKGCMC	1 cut(s)	187
BseXI	GCAGC	4 cut(s)	68, 95, 155, 277
BseYI	CCCAGC	1 cut(s)	254
Bsh1236I	CGCG	1 cut(s)	158
BshFI	GGCC	2 cut(s)	185, 297
BshNI	GGYRCC	1 cut(s)	74
BshVI	ATCGAT	1 cut(s)	65
BsiSI	CCGG	2 cut(s)	270, 282
BslFI	GGGAC	1 cut(s)	163
BslI	CCNNNNNNNGG	1 cut(s)	269
BsmFI	GGGAC	1 cut(s)	163
BsnI	GGCC	2 cut(s)	185, 297
Bsp120I	GGGCCC	1 cut(s)	183
Bsp1286I	GDGCHC	1 cut(s)	187
Bsp143I	GATC	2 cut(s)	177, 333
Bsp19I	CCATGG	1 cut(s)	48
BspACI	CCGC	7 cut(s)	53, 96, 156, 158, 171, 174, 217
BspANI	GGCC	2 cut(s)	185, 297
BspDI	ATCGAT	1 cut(s)	65
BspFNI	CGCG	1 cut(s)	158
BspLI	GGNNCC	2 cut(s)	76, 185
BspMAI	CTGCAG	1 cut(s)	295
BspPI	GGATC	1 cut(s)	185
BspT107I	GGYRCC	1 cut(s)	74
BsrFI	RCCGGY	1 cut(s)	281
BssAI	RCCGGY	1 cut(s)	281
BssECI	CCNNGG	2 cut(s)	48, 156
BssMI	GATC	2 cut(s)	177, 333
BssT1I	CCWWGG	1 cut(s)	48
Bst2UI	CCWGG	1 cut(s)	303
Bst4CI	ACNGT	2 cut(s)	146, 236
BstBAI	YACGTR	1 cut(s)	93
BstC8I	GCNNGC	1 cut(s)	295
BstDSI	CCRYGG	2 cut(s)	48, 156
BstFNI	CGCG	1 cut(s)	158
BstKTI	GATC	2 cut(s)	180, 336
BstMBI	GATC	2 cut(s)	177, 333
BstMWI	GCNNNNNNNGC	3 cut(s)	83, 287, 303
BstNI	CCWGG	1 cut(s)	303
BstSCI	CCNGG	1 cut(s)	301
BstSFI	CTRYAG	1 cut(s)	291
BstSLI	GKGCMC	1 cut(s)	187
BstUI	CGCG	1 cut(s)	158
BstV1I	GCAGC	4 cut(s)	68, 95, 155, 277
BstXI	CCANNNNNNTGG	1 cut(s)	146
Bsu15I	ATCGAT	1 cut(s)	65
BsuRI	GGCC	2 cut(s)	185, 297
BsuTUI	ATCGAT	1 cut(s)	65
BtgI	CCRYGG	2 cut(s)	48, 156
Cac8I	GCNNGC	1 cut(s)	295
Cfr10I	RCCGGY	1 cut(s)	281
Cfr13I	GGNCC	2 cut(s)	183, 184
Cfr42I	CCGCGG	1 cut(s)	159
ClaI	ATCGAT	1 cut(s)	65
CviAII	CATG	2 cut(s)	49, 196
CviJI	RGCY	6 cut(s)	86, 115, 185, 200, 275, 297
CviKI_1	RGCY	6 cut(s)	86, 115, 185, 200, 275, 297
DpnI	GATC	2 cut(s)	179, 335
DpnII	GATC	2 cut(s)	177, 333
Eco130I	CCWWGG	1 cut(s)	48
Eco147I	AGGCCT	1 cut(s)	297
Eco24I	GRGCYC	1 cut(s)	187
EcoO109I	RGGNCCY	2 cut(s)	183, 184
EcoRII	CCWGG	1 cut(s)	301
EcoT14I	CCWWGG	1 cut(s)	48
EcoT38I	GRGCYC	1 cut(s)	187
ErhI	CCWWGG	1 cut(s)	48
FaeI	CATG	2 cut(s)	52, 199
FaiI	YATR	3 cut(s)	50, 192, 197
FalI	AAGNNNNNCTT	2 cut(s)	72, 104
FaqI	GGGAC	1 cut(s)	163
FatI	CATG	2 cut(s)	48, 195
FauI	CCCGC	2 cut(s)	163, 167
Fnu4HI	GCNGC	7 cut(s)	54, 57, 84, 159, 169, 172, 291
FriOI	GRGCYC	1 cut(s)	187
Fsp4HI	GCNGC	7 cut(s)	54, 57, 84, 159, 169, 172, 291
GluI	GCNGC	7 cut(s)	54, 57, 84, 159, 169, 172, 291
GsaI	CCCAGC	1 cut(s)	258
GsuI	CTGGAG	1 cut(s)	33
HaeIII	GGCC	2 cut(s)	185, 297
HapII	CCGG	2 cut(s)	270, 282
Hin1II	CATG	2 cut(s)	52, 199
HincII	GTYRAC	1 cut(s)	319
HindII	GTYRAC	1 cut(s)	319
HinfI	GANTC	2 cut(s)	151, 259
HpaII	CCGG	2 cut(s)	270, 282
HphI	GGTGA	1 cut(s)	118
Hpy166II	GTNNAC	2 cut(s)	109, 319
Hpy188III	TCNNGA	1 cut(s)	12
Hpy8I	GTNNAC	2 cut(s)	109, 319
HpyAV	CCTTC	2 cut(s)	308, 351
HpyCH4III	ACNGT	2 cut(s)	146, 236
HpyCH4IV	ACGT	2 cut(s)	92, 135
HpyCH4V	TGCA	3 cut(s)	231, 293, 354
HpyF10VI	GCNNNNNNNGC	3 cut(s)	83, 287, 303
HpySE526I	ACGT	2 cut(s)	92, 135
Hsp92II	CATG	2 cut(s)	52, 199
KspI	CCGCGG	1 cut(s)	159
Kzo9I	GATC	2 cut(s)	177, 333
LmnI	GCTCC	1 cut(s)	272
Lsp1109I	GCAGC	4 cut(s)	68, 95, 155, 277
LweI	GCATC	1 cut(s)	108
MaeII	ACGT	2 cut(s)	92, 135
MalI	GATC	2 cut(s)	179, 335
MboI	GATC	2 cut(s)	177, 333
MhlI	GDGCHC	1 cut(s)	187
MluCI	AATT	1 cut(s)	163
MlyI	GAGTC	1 cut(s)	145
MnlI	CCTC	1 cut(s)	197
MspA1I	CMGCKG	1 cut(s)	158
MspI	CCGG	2 cut(s)	270, 282
MspR9I	CCNGG	1 cut(s)	303
MvaI	CCWGG	1 cut(s)	303
MvnI	CGCG	1 cut(s)	158
MwoI	GCNNNNNNNGC	3 cut(s)	83, 287, 303
NcoI	CCATGG	1 cut(s)	48
NdeII	GATC	2 cut(s)	177, 333
NlaIII	CATG	2 cut(s)	52, 199
NlaIV	GGNNCC	2 cut(s)	76, 185
PceI	AGGCCT	1 cut(s)	297
PfeI	GAWTC	1 cut(s)	259
PkrI	GCNGC	7 cut(s)	55, 58, 85, 160, 170, 173, 292
PleI	GAGTC	1 cut(s)	145
PpsI	GAGTC	1 cut(s)	145
Ppu21I	YACGTR	1 cut(s)	93
Psp6I	CCWGG	1 cut(s)	301
PspFI	CCCAGC	1 cut(s)	254
PspGI	CCWGG	1 cut(s)	301
PspN4I	GGNNCC	2 cut(s)	76, 185
PspOMI	GGGCCC	1 cut(s)	183
PspPI	GGNCC	2 cut(s)	183, 184
PstI	CTGCAG	1 cut(s)	295
SacII	CCGCGG	1 cut(s)	159
SatI	GCNGC	7 cut(s)	54, 57, 84, 159, 169, 172, 291
Sau3AI	GATC	2 cut(s)	177, 333
Sau96I	GGNCC	2 cut(s)	183, 184
SchI	GAGTC	1 cut(s)	145
ScrFI	CCNGG	1 cut(s)	303
SduI	GDGCHC	1 cut(s)	187
SetI	ASST	6 cut(s)	27, 95, 105, 117, 138, 277
SfaNI	GCATC	1 cut(s)	108
SfcI	CTRYAG	1 cut(s)	291
Sfr303I	CCGCGG	1 cut(s)	159
SgrBI	CCGCGG	1 cut(s)	159
Sse9I	AATT	1 cut(s)	163
SseBI	AGGCCT	1 cut(s)	297
SsiI	CCGC	7 cut(s)	53, 96, 156, 158, 171, 174, 217
StuI	AGGCCT	1 cut(s)	297
StyD4I	CCNGG	1 cut(s)	301
StyI	CCWWGG	1 cut(s)	48
TaaI	ACNGT	2 cut(s)	146, 236
TaiI	ACGT	2 cut(s)	95, 138
TaqI	TCGA	1 cut(s)	65
TasI	AATT	1 cut(s)	163
TauI	GCSGC	3 cut(s)	56, 161, 174
TfiI	GAWTC	1 cut(s)	259
TseI	GCWGC	4 cut(s)	56, 83, 168, 290

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.