Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0005488

Physical Location & Seq

Genomic Coordinates Forward (+)

26953071 .. 26954092

Gene Structure 1022 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G293000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 372 bp

ATGGCTAGCTCTGGACAGCTCCTCAAGCTCGTTTGCCTTGTGGCGGTGATGTGCTGCATGGCGGTTGGTGGTCCCAAGGCCATGGCAGCTGTGTCATGCGGCCAGGTGGTGAACAATCTGACCCCATGCATAAACTACGTGGCAAACGGTGGGGCGTTGAACCCTAGTTGCTGCACTGGGGTCAGGTCTCTCTACAGCTTGGCTCAGACCACAGCTGACCGCCAGAGCATCTGCAACTGCTTGAAGCAAGCCGTCAATGGCATCCCTTACACCAATGCAAATGCTGGGCTTGCCGCTGGCCTTCCTGGCAAGTGTGGGGTCAATATTCCTTACAAGATCTCTCCTTCTACTGACTGCAAAAGCATCAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0006810 GO:0006869 GO:0008150 GO:0010876 GO:0016020 GO:0033036 GO:0051179 GO:0051234 GO:0071702

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LTP_2 Tryp_alpha_amyl

Protein Analysis

124

Amino Acids

12.47

Weight (kDa)

8.94

Isoelectric Point (pI)

37.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005488)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G01870
fragaria_vesca	FvH4_6g09960 FvH4_7g28420
malus_domestica	MD04G1174000.v1.1 MD12G1187600.v1.1
prunus_persica	Prupe.6G293000_v2.0.a1
pyrus_communis	pycom04g15360 pycom12g17560
rosa_chinensis	RchiOBHm_Chr3g0460541 RchiOBHm_Chr3g0460571
rosa_laevigata	RLG00000024995 RLG00000031904
rosa_multiflora	Rmu_co8040472.1_g000001 Rmu_sc0001256.1_g000003 Rmu_sc0003701.1_g000004 Rmu_sc0006046.1_g000007
rosa_roxburghii	Rroxscaffold_6G00419360 Rroxscaffold_6G00419390
rosa_rugosa	Rorug03G0043600 Rorug03G0043900
rosa_samantha	Rh3AG101600 Rh3AG102100 Rh3BG105600 Rh3BG105800 Rh3CG107400 Rh3DG107000 Rh3DG107200
rosa_wichuraiana	Rw3G008650 Rw3G008670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	5 cut(s)	44, 62, 99, 220, 294
AcoI	YGGCCR	1 cut(s)	100
AfiI	CCNNNNNNNGG	1 cut(s)	43
AgsI	TTSAA	2 cut(s)	160, 244
AjnI	CCWGG	2 cut(s)	102, 304
AluBI	AGCT	6 cut(s)	9, 19, 28, 89, 198, 215
AluI	AGCT	6 cut(s)	9, 19, 28, 89, 198, 215
Alw26I	GTCTC	1 cut(s)	192
AoxI	GGCC	3 cut(s)	78, 100, 298
ApeKI	GCWGC	3 cut(s)	54, 86, 171
AspS9I	GGNCC	1 cut(s)	71
AsuHPI	GGTGA	2 cut(s)	58, 121
AsuNHI	GCTAGC	1 cut(s)	5
AvaII	GGWCC	1 cut(s)	71
BbvI	GCAGC	3 cut(s)	41, 98, 158
BceAI	ACGGC	1 cut(s)	236
BciT130I	CCWGG	2 cut(s)	104, 306
BcoDI	GTCTC	1 cut(s)	192
BfaI	CTAG	2 cut(s)	6, 165
BfmI	CTRYAG	1 cut(s)	193
BglI	GCCNNNNNGGC	1 cut(s)	306
BglII	AGATCT	1 cut(s)	336
BisI	GCNGC	5 cut(s)	55, 87, 100, 172, 294
BlsI	GCNGC	5 cut(s)	56, 88, 101, 173, 295
Bme1390I	CCNGG	2 cut(s)	104, 306
Bme18I	GGWCC	1 cut(s)	71
BmgT120I	GGNCC	1 cut(s)	71
BmiI	GGNNCC	1 cut(s)	73
BmrFI	CCNGG	2 cut(s)	104, 306
BmrI	ACTGGG	1 cut(s)	186
BmsI	GCATC	2 cut(s)	237, 270
BmtI	GCTAGC	1 cut(s)	9
BmuI	ACTGGG	1 cut(s)	186
BpuEI	CTTGAG	1 cut(s)	8
BsaAI	YACGTR	1 cut(s)	139
BsaI	GGTCTC	1 cut(s)	192
BsaJI	CCNNGG	2 cut(s)	75, 81
Bsc4I	CCNNNNNNNGG	1 cut(s)	43
Bse1I	ACTGG	1 cut(s)	181
BseBI	CCWGG	2 cut(s)	104, 306
BseDI	CCNNGG	2 cut(s)	75, 81
BseGI	GGATG	1 cut(s)	261
BseLI	CCNNNNNNNGG	1 cut(s)	43
BseMII	CTCAG	1 cut(s)	218
BseNI	ACTGG	1 cut(s)	181
BseRI	GAGGAG	1 cut(s)	11
BseXI	GCAGC	3 cut(s)	41, 98, 158
BseYI	CCCAGC	1 cut(s)	284
BsgI	GTGCAG	1 cut(s)	157
BshFI	GGCC	3 cut(s)	80, 102, 300
BslFI	GGGAC	1 cut(s)	57
BslI	CCNNNNNNNGG	1 cut(s)	43
BsmAI	GTCTC	1 cut(s)	192
BsmFI	GGGAC	1 cut(s)	57
BsnI	GGCC	3 cut(s)	80, 102, 300
Bso31I	GGTCTC	1 cut(s)	192
Bsp143I	GATC	1 cut(s)	336
Bsp19I	CCATGG	1 cut(s)	81
BspACI	CCGC	5 cut(s)	44, 62, 99, 220, 294
BspANI	GGCC	3 cut(s)	80, 102, 300
BspCNI	CTCAG	1 cut(s)	217
BspLI	GGNNCC	1 cut(s)	73
BspOI	GCTAGC	1 cut(s)	9
BspTNI	GGTCTC	1 cut(s)	192
BsrI	ACTGG	1 cut(s)	181
BssECI	CCNNGG	2 cut(s)	75, 81
BssMI	GATC	1 cut(s)	336
BssT1I	CCWWGG	2 cut(s)	75, 81
Bst2UI	CCWGG	2 cut(s)	104, 306
Bst4CI	ACNGT	1 cut(s)	149
BstBAI	YACGTR	1 cut(s)	139
BstC8I	GCNNGC	4 cut(s)	7, 249, 291, 298
BstDEI	CTNAG	1 cut(s)	204
BstDSI	CCRYGG	1 cut(s)	81
BstF5I	GGATG	1 cut(s)	261
BstKTI	GATC	1 cut(s)	339
BstMAI	GTCTC	1 cut(s)	192
BstMBI	GATC	1 cut(s)	336
BstMWI	GCNNNNNNNGC	4 cut(s)	25, 86, 290, 306
BstNI	CCWGG	2 cut(s)	104, 306
BstSCI	CCNGG	2 cut(s)	102, 304
BstSFI	CTRYAG	1 cut(s)	193
BstV1I	GCAGC	3 cut(s)	41, 98, 158
BstX2I	RGATCY	1 cut(s)	336
BstXI	CCANNNNNNTGG	1 cut(s)	82
BstYI	RGATCY	1 cut(s)	336
BsuRI	GGCC	3 cut(s)	80, 102, 300
BtgI	CCRYGG	1 cut(s)	81
BtsCI	GGATG	1 cut(s)	261
BtsIMutI	CAGTG	1 cut(s)	174
Cac8I	GCNNGC	4 cut(s)	7, 249, 291, 298
Cfr13I	GGNCC	1 cut(s)	71
CviAII	CATG	4 cut(s)	58, 82, 96, 126
DdeI	CTNAG	1 cut(s)	204
DpnI	GATC	1 cut(s)	338
DpnII	GATC	1 cut(s)	336
EaeI	YGGCCR	1 cut(s)	100
Eco130I	CCWWGG	2 cut(s)	75, 81
Eco31I	GGTCTC	1 cut(s)	192
Eco47I	GGWCC	1 cut(s)	71
EcoRII	CCWGG	2 cut(s)	102, 304
EcoT14I	CCWWGG	2 cut(s)	75, 81
EcoT22I	ATGCAT	1 cut(s)	131
ErhI	CCWWGG	2 cut(s)	75, 81
FaeI	CATG	4 cut(s)	61, 85, 99, 129
FaiI	YATR	5 cut(s)	59, 83, 97, 127, 131
FaqI	GGGAC	1 cut(s)	57
FatI	CATG	4 cut(s)	57, 81, 95, 125
Fnu4HI	GCNGC	5 cut(s)	55, 87, 100, 172, 294
FokI	GGATG	1 cut(s)	248
Fsp4HI	GCNGC	5 cut(s)	55, 87, 100, 172, 294
FspBI	CTAG	2 cut(s)	6, 165
GluI	GCNGC	5 cut(s)	55, 87, 100, 172, 294
GsaI	CCCAGC	1 cut(s)	288
HaeIII	GGCC	3 cut(s)	80, 102, 300
Hin1II	CATG	4 cut(s)	61, 85, 99, 129
HphI	GGTGA	2 cut(s)	58, 121
Hpy166II	GTNNAC	1 cut(s)	112
Hpy188I	TCNGA	2 cut(s)	120, 207
Hpy188III	TCNNGA	1 cut(s)	12
Hpy8I	GTNNAC	1 cut(s)	112
HpyAV	CCTTC	2 cut(s)	311, 354
HpyCH4III	ACNGT	1 cut(s)	149
HpyCH4IV	ACGT	1 cut(s)	138
HpyCH4V	TGCA	6 cut(s)	57, 129, 174, 234, 278, 357
HpyF10VI	GCNNNNNNNGC	4 cut(s)	25, 86, 290, 306
HpyF3I	CTNAG	1 cut(s)	204
HpySE526I	ACGT	1 cut(s)	138
Hsp92II	CATG	4 cut(s)	61, 85, 99, 129
Kzo9I	GATC	1 cut(s)	336
LmnI	GCTCC	1 cut(s)	24
LpnPI	CCDG	9 cut(s)	89, 116, 162, 169, 236, 270, 282, 291, 318
Lsp1109I	GCAGC	3 cut(s)	41, 98, 158
LweI	GCATC	2 cut(s)	237, 270
MaeI	CTAG	2 cut(s)	6, 165
MaeII	ACGT	1 cut(s)	138
MalI	GATC	1 cut(s)	338
MboI	GATC	1 cut(s)	336
MflI	RGATCY	1 cut(s)	336
MnlI	CCTC	1 cut(s)	32
Mph1103I	ATGCAT	1 cut(s)	131
MspA1I	CMGCKG	3 cut(s)	89, 215, 296
MspR9I	CCNGG	2 cut(s)	104, 306
MvaI	CCWGG	2 cut(s)	104, 306
MwoI	GCNNNNNNNGC	4 cut(s)	25, 86, 290, 306
NcoI	CCATGG	1 cut(s)	81
NdeII	GATC	1 cut(s)	336
NheI	GCTAGC	1 cut(s)	5
NlaIII	CATG	4 cut(s)	61, 85, 99, 129
NlaIV	GGNNCC	1 cut(s)	73
NsiI	ATGCAT	1 cut(s)	131
PkrI	GCNGC	5 cut(s)	56, 88, 101, 173, 295
Ppu21I	YACGTR	1 cut(s)	139
Psp6I	CCWGG	2 cut(s)	102, 304
PspFI	CCCAGC	1 cut(s)	284
PspGI	CCWGG	2 cut(s)	102, 304
PspN4I	GGNNCC	1 cut(s)	73
PspPI	GGNCC	1 cut(s)	71
PsuI	RGATCY	1 cut(s)	336
PvuII	CAGCTG	2 cut(s)	89, 215
SatI	GCNGC	5 cut(s)	55, 87, 100, 172, 294
Sau3AI	GATC	1 cut(s)	336
Sau96I	GGNCC	1 cut(s)	71
ScrFI	CCNGG	2 cut(s)	104, 306
SetI	ASST	9 cut(s)	11, 21, 30, 91, 108, 141, 188, 200, 217
SfaNI	GCATC	2 cut(s)	237, 270
SfcI	CTRYAG	1 cut(s)	193
SinI	GGWCC	1 cut(s)	71
SmlI	CTYRAG	1 cut(s)	23
SmoI	CTYRAG	1 cut(s)	23
SsiI	CCGC	5 cut(s)	44, 62, 99, 220, 294
SspI	AATATT	1 cut(s)	325
SspMI	CTAG	2 cut(s)	6, 165
StyD4I	CCNGG	2 cut(s)	102, 304
StyI	CCWWGG	2 cut(s)	75, 81
TaaI	ACNGT	1 cut(s)	149
TaiI	ACGT	1 cut(s)	141
TauI	GCSGC	2 cut(s)	102, 296
TscAI	CASTG	1 cut(s)	181
TseI	GCWGC	3 cut(s)	54, 86, 171
TspRI	CASTG	1 cut(s)	181
VpaK11BI	GGWCC	1 cut(s)	71
XspI	CTAG	2 cut(s)	6, 165
Zsp2I	ATGCAT	1 cut(s)	131

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.