Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0005488

Physical Location & Seq

Genomic Coordinates Reverse (-)

8028425 .. 8029403

Gene Structure 979 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G008670.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 366 bp

ATGGCTTGCTCTAGGGCTTTTATTCTACTCTGCGTGGTGGTGGTGTCCATGGTGGCACTGTTGTTAGGCGGAGCCAAAGCAACCATAACCTGCAGTCAGGTGGTGAACGGGCTGACGCCGTGCATTCCCTACTTGGAAAAAGGTGGGACACCTGCCTCAGGTTGCTGCAGCGGGATCAAGACCCTCTACAGCACGGCACACACCACCGCTGACCTCCAGGGCGTTTGTAACTGTTTGAAAGAAAAATTCAGCAGTATTCACTACAGCAGCAATAACGTCCGCTTTGCTGCTGGGCTTCCTGCCAAGTGCGGGATCAAAATTCCGTACAAGATCAGCCCCTCCACCAACTGCAAAAGCATCAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0006810 GO:0006869 GO:0008150 GO:0010876 GO:0016020 GO:0033036 GO:0051179 GO:0051234 GO:0071702

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LTP_2 Tryp_alpha_amyl

Protein Analysis

121

Amino Acids

12.61

Weight (kDa)

9.2

Isoelectric Point (pI)

28.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LTP_2	PF14368	14 - 109	2.1e-08	Probable lipid transfer
Tryp_alpha_amyl	PF00234	31 - 117	1e-13	Protease inhibitor/seed storage/LTP family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0005488)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G01870
fragaria_vesca	FvH4_6g09960 FvH4_7g28420
malus_domestica	MD04G1174000.v1.1 MD12G1187600.v1.1
prunus_persica	Prupe.6G293000_v2.0.a1
pyrus_communis	pycom04g15360 pycom12g17560
rosa_chinensis	RchiOBHm_Chr3g0460541 RchiOBHm_Chr3g0460571
rosa_laevigata	RLG00000024995 RLG00000031904
rosa_multiflora	Rmu_co8040472.1_g000001 Rmu_sc0001256.1_g000003 Rmu_sc0003701.1_g000004 Rmu_sc0006046.1_g000007
rosa_roxburghii	Rroxscaffold_6G00419360 Rroxscaffold_6G00419390
rosa_rugosa	Rorug03G0043600 Rorug03G0043900
rosa_samantha	Rh3AG101600 Rh3AG102100 Rh3BG105600 Rh3BG105800 Rh3CG107400 Rh3DG107000 Rh3DG107200
rosa_wichuraiana	Rw3G008650 Rw3G008670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	160
Acc36I	ACCTGC	2 cut(s)	98, 160
AciI	CCGC	5 cut(s)	69, 171, 207, 280, 309
AclWI	GGATC	2 cut(s)	182, 320
AcsI	RAATTY	2 cut(s)	245, 318
AcyI	GRCGYC	1 cut(s)	116
AfaI	GTAC	1 cut(s)	326
AfiI	CCNNNNNNNGG	2 cut(s)	158, 309
AgsI	TTSAA	1 cut(s)	238
AjnI	CCWGG	1 cut(s)	216
AlwI	GGATC	2 cut(s)	182, 320
ApeKI	GCWGC	4 cut(s)	165, 168, 267, 287
ApoI	RAATTY	2 cut(s)	245, 318
AsuHPI	GGTGA	1 cut(s)	115
AxyI	CCTNAGG	1 cut(s)	157
BbvI	GCAGC	4 cut(s)	152, 180, 274, 279
BceAI	ACGGC	2 cut(s)	103, 210
BciT130I	CCWGG	1 cut(s)	218
BfaI	CTAG	1 cut(s)	12
BfmI	CTRYAG	4 cut(s)	91, 166, 187, 262
BfuAI	ACCTGC	2 cut(s)	98, 160
BisI	GCNGC	4 cut(s)	166, 169, 268, 288
BlsI	GCNGC	4 cut(s)	167, 170, 269, 289
Bme1390I	CCNGG	1 cut(s)	218
BmiI	GGNNCC	1 cut(s)	73
BmrFI	CCNGG	1 cut(s)	218
BpmI	CTGGAG	1 cut(s)	200
BsaHI	GRCGYC	1 cut(s)	116
BsaJI	CCNNGG	2 cut(s)	48, 217
Bsc4I	CCNNNNNNNGG	2 cut(s)	158, 309
Bse21I	CCTNAGG	1 cut(s)	157
BseBI	CCWGG	1 cut(s)	218
BseDI	CCNNGG	2 cut(s)	48, 217
BseLI	CCNNNNNNNGG	2 cut(s)	158, 309
BseMII	CTCAG	1 cut(s)	171
BseXI	GCAGC	4 cut(s)	152, 180, 274, 279
BseYI	CCCAGC	1 cut(s)	290
BslFI	GGGAC	1 cut(s)	160
BslI	CCNNNNNNNGG	2 cut(s)	158, 309
BsmFI	GGGAC	1 cut(s)	160
BsmI	GAATGC	1 cut(s)	123
Bsp143I	GATC	3 cut(s)	174, 312, 330
Bsp19I	CCATGG	1 cut(s)	48
BspACI	CCGC	5 cut(s)	69, 171, 207, 280, 309
BspCNI	CTCAG	1 cut(s)	170
BspLI	GGNNCC	1 cut(s)	73
BspMAI	CTGCAG	2 cut(s)	95, 170
BspMI	ACCTGC	2 cut(s)	98, 160
BspPI	GGATC	2 cut(s)	182, 320
BssECI	CCNNGG	2 cut(s)	48, 217
BssMI	GATC	3 cut(s)	174, 312, 330
BssNI	GRCGYC	1 cut(s)	116
BssT1I	CCWWGG	1 cut(s)	48
Bst2UI	CCWGG	1 cut(s)	218
Bst4CI	ACNGT	2 cut(s)	60, 233
BstACI	GRCGYC	1 cut(s)	116
BstC8I	GCNNGC	1 cut(s)	7
BstDEI	CTNAG	1 cut(s)	157
BstDSI	CCRYGG	1 cut(s)	48
BstENI	CCTNNNNNAGG	1 cut(s)	156
BstKTI	GATC	3 cut(s)	177, 315, 333
BstMBI	GATC	3 cut(s)	174, 312, 330
BstNI	CCWGG	1 cut(s)	218
BstSCI	CCNGG	1 cut(s)	216
BstSFI	CTRYAG	4 cut(s)	91, 166, 187, 262
BstV1I	GCAGC	4 cut(s)	152, 180, 274, 279
Bsu36I	CCTNAGG	1 cut(s)	157
BtgI	CCRYGG	1 cut(s)	48
BtsIMutI	CAGTG	1 cut(s)	56
BveI	ACCTGC	2 cut(s)	98, 160
Cac8I	GCNNGC	1 cut(s)	7
CseI	GACGC	1 cut(s)	124
Csp6I	GTAC	1 cut(s)	325
CviAII	CATG	1 cut(s)	49
CviJI	RGCY	6 cut(s)	5, 17, 74, 112, 295, 336
CviKI_1	RGCY	6 cut(s)	5, 17, 74, 112, 295, 336
CviQI	GTAC	1 cut(s)	325
DdeI	CTNAG	1 cut(s)	157
DpnI	GATC	3 cut(s)	176, 314, 332
DpnII	GATC	3 cut(s)	174, 312, 330
EciI	GGCGGA	1 cut(s)	84
Eco130I	CCWWGG	1 cut(s)	48
Eco81I	CCTNAGG	1 cut(s)	157
EcoNI	CCTNNNNNAGG	1 cut(s)	156
EcoRII	CCWGG	1 cut(s)	216
EcoT14I	CCWWGG	1 cut(s)	48
ErhI	CCWWGG	1 cut(s)	48
FaeI	CATG	1 cut(s)	52
FaiI	YATR	2 cut(s)	50, 86
FaqI	GGGAC	1 cut(s)	160
FatI	CATG	1 cut(s)	48
FauI	CCCGC	2 cut(s)	164, 302
Fnu4HI	GCNGC	4 cut(s)	166, 169, 268, 288
Fsp4HI	GCNGC	4 cut(s)	166, 169, 268, 288
FspBI	CTAG	1 cut(s)	12
GluI	GCNGC	4 cut(s)	166, 169, 268, 288
GsaI	CCCAGC	1 cut(s)	294
GsuI	CTGGAG	1 cut(s)	200
HgaI	GACGC	1 cut(s)	124
Hin1I	GRCGYC	1 cut(s)	116
Hin1II	CATG	1 cut(s)	52
HphI	GGTGA	1 cut(s)	115
Hpy166II	GTNNAC	1 cut(s)	106
Hpy188III	TCNNGA	1 cut(s)	178
Hpy8I	GTNNAC	1 cut(s)	106
HpyCH4III	ACNGT	2 cut(s)	60, 233
HpyCH4IV	ACGT	1 cut(s)	276
HpyCH4V	TGCA	4 cut(s)	93, 123, 168, 351
HpyF3I	CTNAG	1 cut(s)	157
HpySE526I	ACGT	1 cut(s)	276
Hsp92I	GRCGYC	1 cut(s)	116
Hsp92II	CATG	1 cut(s)	52
Kzo9I	GATC	3 cut(s)	174, 312, 330
LmnI	GCTCC	1 cut(s)	71
LpnPI	CCDG	8 cut(s)	83, 103, 144, 165, 203, 230, 276, 312
Lsp1109I	GCAGC	4 cut(s)	152, 180, 274, 279
MaeI	CTAG	1 cut(s)	12
MaeII	ACGT	1 cut(s)	276
MaeIII	GTNAC	1 cut(s)	227
MalI	GATC	3 cut(s)	176, 314, 332
MboI	GATC	3 cut(s)	174, 312, 330
MluCI	AATT	2 cut(s)	245, 318
MnlI	CCTC	4 cut(s)	166, 194, 224, 349
MspA1I	CMGCKG	2 cut(s)	171, 209
MspR9I	CCNGG	1 cut(s)	218
Mva1269I	GAATGC	1 cut(s)	123
MvaI	CCWGG	1 cut(s)	218
NcoI	CCATGG	1 cut(s)	48
NdeII	GATC	3 cut(s)	174, 312, 330
NlaIII	CATG	1 cut(s)	52
NlaIV	GGNNCC	1 cut(s)	73
PaqCI	CACCTGC	1 cut(s)	160
PctI	GAATGC	1 cut(s)	123
PkrI	GCNGC	4 cut(s)	167, 170, 269, 289
Psp6I	CCWGG	1 cut(s)	216
PspFI	CCCAGC	1 cut(s)	290
PspGI	CCWGG	1 cut(s)	216
PspN4I	GGNNCC	1 cut(s)	73
PstI	CTGCAG	2 cut(s)	95, 170
RsaI	GTAC	1 cut(s)	326
RsaNI	GTAC	1 cut(s)	325
SatI	GCNGC	4 cut(s)	166, 169, 268, 288
Sau3AI	GATC	3 cut(s)	174, 312, 330
ScrFI	CCNGG	1 cut(s)	218
SetI	ASST	7 cut(s)	92, 102, 145, 154, 163, 216, 279
SfcI	CTRYAG	4 cut(s)	91, 166, 187, 262
Sse9I	AATT	2 cut(s)	245, 318
SsiI	CCGC	5 cut(s)	69, 171, 207, 280, 309
SspMI	CTAG	1 cut(s)	12
StyD4I	CCNGG	1 cut(s)	216
StyI	CCWWGG	1 cut(s)	48
TaaI	ACNGT	2 cut(s)	60, 233
TaiI	ACGT	1 cut(s)	279
TasI	AATT	2 cut(s)	245, 318
TscAI	CASTG	1 cut(s)	63
TseI	GCWGC	4 cut(s)	165, 168, 267, 287
TspGWI	ACGGA	1 cut(s)	312
TspRI	CASTG	1 cut(s)	63
XagI	CCTNNNNNAGG	1 cut(s)	156
XapI	RAATTY	2 cut(s)	245, 318
XspI	CTAG	1 cut(s)	12

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.