Rorug03G0043900

Plant non-specific lipid-transfer proteins transfer phospholipids as well as galactolipids across membranes. May play a role in wax or cutin deposition in the cell walls of expanding epidermal cells and certain secretory tissues

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0005488
Physical Location & Seq
Forward (+)
3415177 .. 3415461
285 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0043900.1

Sequence Viewer

Length: 285 bp
ATGAGTTACCAGTTGACGAGACACGATCTCATCGTAAGCCAAGTCTCAGCTGCTCTTCGAGCATCAGAAGACCCAGCACAACTAGTTCTGAATGCAATGAAAGGGTTTTACCCTTCGAGATCTCTTGGGGATGGCAATGAGGCAGATTTTGATACGATCGTCATCATTCGAAGGAGTTGCATTTCTCTGAAGAAAATGAGACCGGAAGTCACGCCTAGGGTGAGAGAAGAAGCGATGAGGTTGGCGTGTGATTGGAAGGCCAAGATGATGCATGATAGCGGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0006810 GO:0006869 GO:0008150 GO:0010876 GO:0016020 GO:0033036 GO:0051179 GO:0051234 GO:0071702
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LTP_2 Tryp_alpha_amyl

Protein Analysis

94

Amino Acids

10.61

Weight (kDa)

8.71

Isoelectric Point (pI)

72.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Frigida PF07899 8 - 92 8.5e-14 Frigida-like protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 279
AcuI CTGAAG 1 cut(s) 209
AhdI GACNNNNNGTC 1 cut(s) 206
AhlI ACTAGT 1 cut(s) 82
AluBI AGCT 1 cut(s) 50
AluI AGCT 1 cut(s) 50
Alw26I GTCTC 3 cut(s) 13, 49, 193
AoxI GGCC 1 cut(s) 258
ApeKI GCWGC 1 cut(s) 50
AspA2I CCTAGG 1 cut(s) 215
AsuHPI GGTGA 1 cut(s) 232
AsuII TTCGAA 1 cut(s) 169
AvrII CCTAGG 1 cut(s) 215
BaeI ACNNNNGTAYC 2 cut(s) 144, 177
BbsI GAAGAC 1 cut(s) 75
BbvI GCAGC 1 cut(s) 37
BccI CCATC 1 cut(s) 125
BcgI CGANNNNNNTGC 2 cut(s) 159, 193
BcoDI GTCTC 3 cut(s) 13, 49, 193
BcuI ACTAGT 1 cut(s) 82
BfaI CTAG 2 cut(s) 83, 216
BglII AGATCT 1 cut(s) 119
BisI GCNGC 2 cut(s) 51, 280
BlnI CCTAGG 1 cut(s) 215
BlsI GCNGC 2 cut(s) 52, 281
BmeRI GACNNNNNGTC 1 cut(s) 206
BmsI GCATC 2 cut(s) 71, 258
BpiI GAAGAC 1 cut(s) 75
Bpu14I TTCGAA 1 cut(s) 169
BsaBI GATNNNNATC 1 cut(s) 161
BsaI GGTCTC 1 cut(s) 193
BsaJI CCNNGG 1 cut(s) 215
BsaWI WCCGGW 1 cut(s) 202
Bse1I ACTGG 1 cut(s) 10
Bse3DI GCAATG 2 cut(s) 102, 142
Bse8I GATNNNNATC 1 cut(s) 161
BseDI CCNNGG 1 cut(s) 215
BseGI GGATG 1 cut(s) 136
BseJI GATNNNNATC 1 cut(s) 161
BseMI GCAATG 2 cut(s) 102, 142
BseMII CTCAG 1 cut(s) 60
BseNI ACTGG 1 cut(s) 10
BseXI GCAGC 1 cut(s) 37
BseYI CCCAGC 1 cut(s) 73
Bsh1285I CGRYCG 1 cut(s) 159
BshFI GGCC 1 cut(s) 260
BsiEI CGRYCG 1 cut(s) 159
BsiSI CCGG 1 cut(s) 203
BsmAI GTCTC 3 cut(s) 13, 49, 193
BsmI GAATGC 1 cut(s) 97
BsnI GGCC 1 cut(s) 260
Bso31I GGTCTC 1 cut(s) 193
Bsp119I TTCGAA 1 cut(s) 169
Bsp143I GATC 3 cut(s) 25, 119, 156
BspACI CCGC 1 cut(s) 279
BspANI GGCC 1 cut(s) 260
BspCNI CTCAG 1 cut(s) 59
BspQI GCTCTTC 1 cut(s) 60
BspT104I TTCGAA 1 cut(s) 169
BspTNI GGTCTC 1 cut(s) 193
BsrDI GCAATG 2 cut(s) 102, 142
BsrI ACTGG 1 cut(s) 10
BssECI CCNNGG 1 cut(s) 215
BssMI GATC 3 cut(s) 25, 119, 156
BssT1I CCWWGG 1 cut(s) 215
Bst6I CTCTTC 1 cut(s) 60
BstBI TTCGAA 1 cut(s) 169
BstDEI CTNAG 1 cut(s) 46
BstF5I GGATG 1 cut(s) 136
BstKTI GATC 3 cut(s) 28, 122, 159
BstMAI GTCTC 3 cut(s) 13, 49, 193
BstMBI GATC 3 cut(s) 25, 119, 156
BstMCI CGRYCG 1 cut(s) 159
BstMWI GCNNNNNNNGC 1 cut(s) 59
BstV1I GCAGC 1 cut(s) 37
BstV2I GAAGAC 1 cut(s) 75
BstX2I RGATCY 1 cut(s) 119
BstYI RGATCY 1 cut(s) 119
BsuRI GGCC 1 cut(s) 260
BtgZI GCGATG 1 cut(s) 248
BtsCI GGATG 1 cut(s) 136
CviAII CATG 1 cut(s) 272
CviJI RGCY 4 cut(s) 39, 50, 260, 282
CviKI_1 RGCY 4 cut(s) 39, 50, 260, 282
DdeI CTNAG 1 cut(s) 46
DpnI GATC 3 cut(s) 27, 121, 158
DpnII GATC 3 cut(s) 25, 119, 156
DriI GACNNNNNGTC 1 cut(s) 206
Eam1104I CTCTTC 1 cut(s) 60
Eam1105I GACNNNNNGTC 1 cut(s) 206
EarI CTCTTC 1 cut(s) 60
Eco130I CCWWGG 1 cut(s) 215
Eco31I GGTCTC 1 cut(s) 193
Eco57I CTGAAG 1 cut(s) 209
EcoT14I CCWWGG 1 cut(s) 215
EcoT22I ATGCAT 1 cut(s) 273
ErhI CCWWGG 1 cut(s) 215
FaeI CATG 1 cut(s) 275
FaiI YATR 1 cut(s) 273
FatI CATG 1 cut(s) 271
Fnu4HI GCNGC 2 cut(s) 51, 280
FokI GGATG 1 cut(s) 143
Fsp4HI GCNGC 2 cut(s) 51, 280
FspBI CTAG 2 cut(s) 83, 216
GluI GCNGC 2 cut(s) 51, 280
GsaI CCCAGC 1 cut(s) 77
HaeIII GGCC 1 cut(s) 260
HapII CCGG 1 cut(s) 203
Hin1II CATG 1 cut(s) 275
HincII GTYRAC 1 cut(s) 15
HindII GTYRAC 1 cut(s) 15
HpaII CCGG 1 cut(s) 203
HphI GGTGA 1 cut(s) 232
Hpy166II GTNNAC 1 cut(s) 15
Hpy188I TCNGA 3 cut(s) 67, 90, 189
Hpy188III TCNNGA 1 cut(s) 117
Hpy8I GTNNAC 1 cut(s) 15
HpyAV CCTTC 3 cut(s) 123, 165, 250
HpyCH4V TGCA 3 cut(s) 95, 180, 271
HpyF10VI GCNNNNNNNGC 1 cut(s) 59
HpyF3I CTNAG 1 cut(s) 46
Hsp92II CATG 1 cut(s) 275
Kzo9I GATC 3 cut(s) 25, 119, 156
LguI GCTCTTC 1 cut(s) 60
LpnPI CCDG 3 cut(s) 23, 87, 216
Lsp1109I GCAGC 1 cut(s) 37
LweI GCATC 2 cut(s) 71, 258
MaeI CTAG 2 cut(s) 83, 216
MaeIII GTNAC 2 cut(s) 5, 208
MalI GATC 3 cut(s) 27, 121, 158
MboI GATC 3 cut(s) 25, 119, 156
MboII GAAGA 4 cut(s) 47, 80, 202, 239
MflI RGATCY 1 cut(s) 119
MnlI CCTC 2 cut(s) 133, 231
Mph1103I ATGCAT 1 cut(s) 273
MspA1I CMGCKG 1 cut(s) 50
MspI CCGG 1 cut(s) 203
Mva1269I GAATGC 1 cut(s) 97
MwoI GCNNNNNNNGC 1 cut(s) 59
NdeII GATC 3 cut(s) 25, 119, 156
NlaIII CATG 1 cut(s) 275
NmuCI GTSAC 1 cut(s) 208
NsiI ATGCAT 1 cut(s) 273
NspV TTCGAA 1 cut(s) 169
PciSI GCTCTTC 1 cut(s) 60
PcsI WCGNNNNNNNCGW 1 cut(s) 30
PctI GAATGC 1 cut(s) 97
PkrI GCNGC 2 cut(s) 52, 281
Ple19I CGATCG 1 cut(s) 159
PspFI CCCAGC 1 cut(s) 73
PsuI RGATCY 1 cut(s) 119
PvuI CGATCG 1 cut(s) 159
PvuII CAGCTG 1 cut(s) 50
SapI GCTCTTC 1 cut(s) 60
SatI GCNGC 2 cut(s) 51, 280
Sau3AI GATC 3 cut(s) 25, 119, 156
SetI ASST 2 cut(s) 52, 242
SfaNI GCATC 2 cut(s) 71, 258
SfuI TTCGAA 1 cut(s) 169
SpeI ACTAGT 1 cut(s) 82
SsiI CCGC 1 cut(s) 279
SspMI CTAG 2 cut(s) 83, 216
StyI CCWWGG 1 cut(s) 215
TaqI TCGA 3 cut(s) 58, 116, 169
TauI GCSGC 1 cut(s) 282
TseFI GTSAC 1 cut(s) 208
TseI GCWGC 1 cut(s) 50
Tsp45I GTSAC 1 cut(s) 208
TspDTI ATGAA 1 cut(s) 113
XmaJI CCTAGG 1 cut(s) 215
XspI CTAG 2 cut(s) 83, 216
Zsp2I ATGCAT 1 cut(s) 273
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.