Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0005488

Physical Location & Seq

Genomic Coordinates Forward (+)

40882171 .. 40883042

Gene Structure 872 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00419390.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 366 bp

ATGGCGTTCTCTGGAGTTCTGAAGGTGATTTGCTTGGTGGTGCTATCCATGGCTGCACTGTGGTTTGGTGATGCGAAAGCAGCCATTACGTGTGGTCAGGTGGTGAATAAGCTGATGCCATGCGTTGCCTACGTCCAAAACGGTGGGACTCCCGCGGTGGGTTGCTGCAGCGGGATCAAGACCCTCTACGGCATGGCTCAAACCACCCCTGACCGCCAGAGCGTGTGCAACTGTTTGAAACAAGCAGTTGCCGGAATTCCGTACACCGGAGCTAACGCCGGTCTTGCTGCTGGCCTTCCCGGCAAGTGTGGTGTCAACCTTCCCTACAAGATCAACCCTTCTACTGACTGCAAAAGCATCAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0006810 GO:0006869 GO:0008150 GO:0010876 GO:0016020 GO:0033036 GO:0051179 GO:0051234 GO:0071702

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LTP_2 Tryp_alpha_amyl

Protein Analysis

121

Amino Acids

12.36

Weight (kDa)

9.04

Isoelectric Point (pI)

21.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LTP_2	PF14368	15 - 109	3.6e-06	Probable lipid transfer
Tryp_alpha_amyl	PF00234	31 - 117	5.5e-15	Protease inhibitor/seed storage/LTP family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005488)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G01870
fragaria_vesca	FvH4_6g09960 FvH4_7g28420
malus_domestica	MD04G1174000.v1.1 MD12G1187600.v1.1
prunus_persica	Prupe.6G293000_v2.0.a1
pyrus_communis	pycom04g15360 pycom12g17560
rosa_chinensis	RchiOBHm_Chr3g0460541 RchiOBHm_Chr3g0460571
rosa_laevigata	RLG00000024995 RLG00000031904
rosa_multiflora	Rmu_co8040472.1_g000001 Rmu_sc0001256.1_g000003 Rmu_sc0003701.1_g000004 Rmu_sc0006046.1_g000007
rosa_roxburghii	Rroxscaffold_6G00419360 Rroxscaffold_6G00419390
rosa_rugosa	Rorug03G0043600 Rorug03G0043900
rosa_samantha	Rh3AG101600 Rh3AG102100 Rh3BG105600 Rh3BG105800 Rh3CG107400 Rh3DG107000 Rh3DG107200
rosa_wichuraiana	Rw3G008650 Rw3G008670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	155
AciI	CCGC	4 cut(s)	153, 155, 171, 214
AclWI	GGATC	1 cut(s)	182
AcsI	RAATTY	1 cut(s)	255
AcuI	CTGAAG	1 cut(s)	41
AfaI	GTAC	1 cut(s)	263
AfiI	CCNNNNNNNGG	2 cut(s)	158, 266
AflIII	ACRYGT	1 cut(s)	89
AgsI	TTSAA	1 cut(s)	238
AluBI	AGCT	2 cut(s)	112, 272
AluI	AGCT	2 cut(s)	112, 272
AlwI	GGATC	1 cut(s)	182
AoxI	GGCC	1 cut(s)	292
ApeKI	GCWGC	5 cut(s)	53, 80, 165, 168, 287
ApoI	RAATTY	1 cut(s)	255
AsuC2I	CCSGG	1 cut(s)	300
AsuHPI	GGTGA	3 cut(s)	37, 80, 115
BbvI	GCAGC	5 cut(s)	40, 92, 152, 180, 274
BceAI	ACGGC	1 cut(s)	205
BcnI	CCSGG	1 cut(s)	300
BfmI	CTRYAG	1 cut(s)	166
BglI	GCCNNNNNGGC	1 cut(s)	300
BisI	GCNGC	5 cut(s)	54, 81, 166, 169, 288
BlsI	GCNGC	5 cut(s)	55, 82, 167, 170, 289
Bme1390I	CCNGG	1 cut(s)	300
BmrFI	CCNGG	1 cut(s)	300
BmsI	GCATC	2 cut(s)	61, 105
BpmI	CTGGAG	1 cut(s)	33
BpuMI	CCSGG	1 cut(s)	300
BsaAI	YACGTR	1 cut(s)	90
BsaJI	CCNNGG	2 cut(s)	48, 153
BsaWI	WCCGGW	1 cut(s)	266
Bsc4I	CCNNNNNNNGG	2 cut(s)	158, 266
Bse118I	RCCGGY	1 cut(s)	278
BseDI	CCNNGG	2 cut(s)	48, 153
BseLI	CCNNNNNNNGG	2 cut(s)	158, 266
BseXI	GCAGC	5 cut(s)	40, 92, 152, 180, 274
BsgI	GTGCAG	1 cut(s)	39
Bsh1236I	CGCG	1 cut(s)	155
BshFI	GGCC	1 cut(s)	294
BsiSI	CCGG	4 cut(s)	252, 267, 279, 300
BslFI	GGGAC	1 cut(s)	160
BslI	CCNNNNNNNGG	2 cut(s)	158, 266
BsmFI	GGGAC	1 cut(s)	160
BsnI	GGCC	1 cut(s)	294
Bsp143I	GATC	2 cut(s)	174, 330
Bsp19I	CCATGG	1 cut(s)	48
BspACI	CCGC	4 cut(s)	153, 155, 171, 214
BspANI	GGCC	1 cut(s)	294
BspFNI	CGCG	1 cut(s)	155
BspMAI	CTGCAG	1 cut(s)	170
BspPI	GGATC	1 cut(s)	182
BsrFI	RCCGGY	1 cut(s)	278
BssAI	RCCGGY	1 cut(s)	278
BssECI	CCNNGG	2 cut(s)	48, 153
BssMI	GATC	2 cut(s)	174, 330
BssT1I	CCWWGG	1 cut(s)	48
Bst4CI	ACNGT	3 cut(s)	60, 143, 233
BstBAI	YACGTR	1 cut(s)	90
BstC8I	GCNNGC	1 cut(s)	292
BstDSI	CCRYGG	2 cut(s)	48, 153
BstFNI	CGCG	1 cut(s)	155
BstKTI	GATC	2 cut(s)	177, 333
BstMBI	GATC	2 cut(s)	174, 330
BstMWI	GCNNNNNNNGC	3 cut(s)	80, 284, 300
BstSCI	CCNGG	1 cut(s)	298
BstSFI	CTRYAG	1 cut(s)	166
BstUI	CGCG	1 cut(s)	155
BstV1I	GCAGC	5 cut(s)	40, 92, 152, 180, 274
BstXI	CCANNNNNNTGG	1 cut(s)	143
BsuRI	GGCC	1 cut(s)	294
BtgI	CCRYGG	2 cut(s)	48, 153
BtsIMutI	CAGTG	1 cut(s)	56
Cac8I	GCNNGC	1 cut(s)	292
Cfr10I	RCCGGY	1 cut(s)	278
Cfr42I	CCGCGG	1 cut(s)	156
Csp6I	GTAC	1 cut(s)	262
CviAII	CATG	3 cut(s)	49, 120, 193
CviJI	RGCY	6 cut(s)	53, 83, 112, 197, 272, 294
CviKI_1	RGCY	6 cut(s)	53, 83, 112, 197, 272, 294
CviQI	GTAC	1 cut(s)	262
DpnI	GATC	2 cut(s)	176, 332
DpnII	GATC	2 cut(s)	174, 330
Eco130I	CCWWGG	1 cut(s)	48
Eco57I	CTGAAG	1 cut(s)	41
EcoRI	GAATTC	1 cut(s)	255
EcoT14I	CCWWGG	1 cut(s)	48
ErhI	CCWWGG	1 cut(s)	48
FaeI	CATG	3 cut(s)	52, 123, 196
FaiI	YATR	3 cut(s)	50, 121, 194
FaqI	GGGAC	1 cut(s)	160
FatI	CATG	3 cut(s)	48, 119, 192
FauI	CCCGC	2 cut(s)	160, 164
Fnu4HI	GCNGC	5 cut(s)	54, 81, 166, 169, 288
Fsp4HI	GCNGC	5 cut(s)	54, 81, 166, 169, 288
GluI	GCNGC	5 cut(s)	54, 81, 166, 169, 288
GsuI	CTGGAG	1 cut(s)	33
HaeIII	GGCC	1 cut(s)	294
HapII	CCGG	4 cut(s)	252, 267, 279, 300
Hin1II	CATG	3 cut(s)	52, 123, 196
HincII	GTYRAC	1 cut(s)	316
HindII	GTYRAC	1 cut(s)	316
HinfI	GANTC	1 cut(s)	148
HpaII	CCGG	4 cut(s)	252, 267, 279, 300
HphI	GGTGA	3 cut(s)	37, 80, 115
Hpy166II	GTNNAC	2 cut(s)	264, 316
Hpy188I	TCNGA	1 cut(s)	21
Hpy188III	TCNNGA	2 cut(s)	12, 178
Hpy8I	GTNNAC	2 cut(s)	264, 316
HpyAV	CCTTC	4 cut(s)	16, 305, 329, 348
HpyCH4III	ACNGT	3 cut(s)	60, 143, 233
HpyCH4IV	ACGT	2 cut(s)	89, 132
HpyCH4V	TGCA	4 cut(s)	56, 168, 228, 351
HpyF10VI	GCNNNNNNNGC	3 cut(s)	80, 284, 300
HpySE526I	ACGT	2 cut(s)	89, 132
Hsp92II	CATG	3 cut(s)	52, 123, 196
KspI	CCGCGG	1 cut(s)	156
Kzo9I	GATC	2 cut(s)	174, 330
LmnI	GCTCC	1 cut(s)	269
LpnPI	CCDG	8 cut(s)	83, 222, 230, 265, 276, 280, 292, 313
Lsp1109I	GCAGC	5 cut(s)	40, 92, 152, 180, 274
LweI	GCATC	2 cut(s)	61, 105
MaeII	ACGT	2 cut(s)	89, 132
MalI	GATC	2 cut(s)	176, 332
MboI	GATC	2 cut(s)	174, 330
MluCI	AATT	1 cut(s)	255
MlyI	GAGTC	1 cut(s)	142
MnlI	CCTC	1 cut(s)	194
MspA1I	CMGCKG	2 cut(s)	155, 171
MspI	CCGG	4 cut(s)	252, 267, 279, 300
MspR9I	CCNGG	1 cut(s)	300
MvnI	CGCG	1 cut(s)	155
MwoI	GCNNNNNNNGC	3 cut(s)	80, 284, 300
NciI	CCSGG	1 cut(s)	300
NcoI	CCATGG	1 cut(s)	48
NdeII	GATC	2 cut(s)	174, 330
NlaIII	CATG	3 cut(s)	52, 123, 196
PkrI	GCNGC	5 cut(s)	55, 82, 167, 170, 289
PleI	GAGTC	1 cut(s)	142
PpsI	GAGTC	1 cut(s)	142
Ppu21I	YACGTR	1 cut(s)	90
PstI	CTGCAG	1 cut(s)	170
RsaI	GTAC	1 cut(s)	263
RsaNI	GTAC	1 cut(s)	262
SacII	CCGCGG	1 cut(s)	156
SatI	GCNGC	5 cut(s)	54, 81, 166, 169, 288
Sau3AI	GATC	2 cut(s)	174, 330
SchI	GAGTC	1 cut(s)	142
ScrFI	CCNGG	1 cut(s)	300
SetI	ASST	7 cut(s)	27, 92, 102, 114, 135, 274, 321
SfaNI	GCATC	2 cut(s)	61, 105
SfcI	CTRYAG	1 cut(s)	166
Sfr303I	CCGCGG	1 cut(s)	156
SgrBI	CCGCGG	1 cut(s)	156
Sse9I	AATT	1 cut(s)	255
SsiI	CCGC	4 cut(s)	153, 155, 171, 214
StyD4I	CCNGG	1 cut(s)	298
StyI	CCWWGG	1 cut(s)	48
TaaI	ACNGT	3 cut(s)	60, 143, 233
TaiI	ACGT	2 cut(s)	92, 135
TasI	AATT	1 cut(s)	255
TscAI	CASTG	1 cut(s)	63
TseI	GCWGC	5 cut(s)	53, 80, 165, 168, 287
TspGWI	ACGGA	1 cut(s)	249
TspRI	CASTG	1 cut(s)	63
XapI	RAATTY	1 cut(s)	255

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.