Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0005488

Physical Location & Seq

Genomic Coordinates Forward (+)

21057419 .. 21058459

Gene Structure 1041 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g28420.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 369 bp

ATGGCGTTCTCTGGAGTTCAAAAGGTGGTGTTCTTGGTGATGCTGTCCATGGCAGCAGCCCTATCGTTTGGTGGTGCGGAAGCAGCCCTTACGTGCGGTCAGGTGGTGAACAAGCTGACGCCTTGCGCTTCCTACATCCAAAACGGTGGGACTCCCGCGGCGAATTGCTGCGGCGGGATCAGGGCCCTCTACGGCATGGCTCAAACCACCCCTGACCGCCAGAGCGTGTGCAACTGTTTGAAACAAGCAATCGCCGGGATTCCTTACACCGGAGCTAAAGCCGGACTCGCTGCAGGCCTTCCCGGCAAGTGTGGTGTCAACATTCCCTACAAGATCAACCCTTCTACTGACTGCAAAAGCATCAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0006810 GO:0006869 GO:0008150 GO:0010876 GO:0016020 GO:0033036 GO:0051179 GO:0051234 GO:0071702

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LTP_2 Tryp_alpha_amyl

Protein Analysis

123

Amino Acids

12.35

Weight (kDa)

9.13

Isoelectric Point (pI)

20.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LTP_2	PF14368	13 - 110	5.8e-07	Probable lipid transfer
Tryp_alpha_amyl	PF00234	32 - 118	2.9e-15	Protease inhibitor/seed storage/LTP family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005488)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G01870
fragaria_vesca	FvH4_6g09960 FvH4_7g28420
malus_domestica	MD04G1174000.v1.1 MD12G1187600.v1.1
prunus_persica	Prupe.6G293000_v2.0.a1
pyrus_communis	pycom04g15360 pycom12g17560
rosa_chinensis	RchiOBHm_Chr3g0460541 RchiOBHm_Chr3g0460571
rosa_laevigata	RLG00000024995 RLG00000031904
rosa_multiflora	Rmu_co8040472.1_g000001 Rmu_sc0001256.1_g000003 Rmu_sc0003701.1_g000004 Rmu_sc0006046.1_g000007
rosa_roxburghii	Rroxscaffold_6G00419360 Rroxscaffold_6G00419390
rosa_rugosa	Rorug03G0043600 Rorug03G0043900
rosa_samantha	Rh3AG101600 Rh3AG102100 Rh3BG105600 Rh3BG105800 Rh3CG107400 Rh3DG107000 Rh3DG107200
rosa_wichuraiana	Rw3G008650 Rw3G008670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	158
AciI	CCGC	7 cut(s)	77, 96, 156, 158, 171, 174, 217
AclWI	GGATC	1 cut(s)	185
AcyI	GRCGYC	1 cut(s)	119
AfiI	CCNNNNNNNGG	1 cut(s)	269
AgsI	TTSAA	2 cut(s)	20, 241
AluBI	AGCT	2 cut(s)	115, 275
AluI	AGCT	2 cut(s)	115, 275
AlwI	GGATC	1 cut(s)	185
AoxI	GGCC	2 cut(s)	183, 295
ApaI	GGGCCC	1 cut(s)	187
ApeKI	GCWGC	5 cut(s)	53, 56, 83, 168, 290
AspLEI	GCGC	1 cut(s)	128
AspS9I	GGNCC	2 cut(s)	183, 184
AsuC2I	CCSGG	2 cut(s)	256, 303
AsuHPI	GGTGA	2 cut(s)	49, 118
BaeGI	GKGCMC	1 cut(s)	187
BanII	GRGCYC	1 cut(s)	187
BbvI	GCAGC	5 cut(s)	65, 68, 95, 155, 277
BceAI	ACGGC	1 cut(s)	208
BcgI	CGANNNNNNTGC	2 cut(s)	45, 79
BcnI	CCSGG	2 cut(s)	256, 303
BfmI	CTRYAG	1 cut(s)	291
BglI	GCCNNNNNGGC	1 cut(s)	303
BisI	GCNGC	7 cut(s)	54, 57, 84, 159, 169, 172, 291
BlsI	GCNGC	7 cut(s)	55, 58, 85, 160, 170, 173, 292
Bme1390I	CCNGG	2 cut(s)	256, 303
BmgT120I	GGNCC	2 cut(s)	183, 184
BmiI	GGNNCC	1 cut(s)	185
BmrFI	CCNGG	2 cut(s)	256, 303
BmsI	GCATC	1 cut(s)	30
BpmI	CTGGAG	1 cut(s)	33
BpuMI	CCSGG	2 cut(s)	256, 303
BsaAI	YACGTR	1 cut(s)	93
BsaHI	GRCGYC	1 cut(s)	119
BsaJI	CCNNGG	2 cut(s)	48, 156
BsaWI	WCCGGW	1 cut(s)	269
Bsc4I	CCNNNNNNNGG	1 cut(s)	269
BseDI	CCNNGG	2 cut(s)	48, 156
BseGI	GGATG	1 cut(s)	135
BseLI	CCNNNNNNNGG	1 cut(s)	269
BseSI	GKGCMC	1 cut(s)	187
BseXI	GCAGC	5 cut(s)	65, 68, 95, 155, 277
Bsh1236I	CGCG	1 cut(s)	158
BshFI	GGCC	2 cut(s)	185, 297
BsiSI	CCGG	4 cut(s)	255, 270, 282, 303
BslFI	GGGAC	1 cut(s)	163
BslI	CCNNNNNNNGG	1 cut(s)	269
BsmFI	GGGAC	1 cut(s)	163
BsnI	GGCC	2 cut(s)	185, 297
Bsp120I	GGGCCC	1 cut(s)	183
Bsp1286I	GDGCHC	1 cut(s)	187
Bsp143I	GATC	2 cut(s)	177, 333
Bsp19I	CCATGG	1 cut(s)	48
BspACI	CCGC	7 cut(s)	77, 96, 156, 158, 171, 174, 217
BspANI	GGCC	2 cut(s)	185, 297
BspFNI	CGCG	1 cut(s)	158
BspLI	GGNNCC	1 cut(s)	185
BspMAI	CTGCAG	1 cut(s)	295
BspPI	GGATC	1 cut(s)	185
BssECI	CCNNGG	2 cut(s)	48, 156
BssMI	GATC	2 cut(s)	177, 333
BssNI	GRCGYC	1 cut(s)	119
BssT1I	CCWWGG	1 cut(s)	48
Bst4CI	ACNGT	2 cut(s)	146, 236
BstACI	GRCGYC	1 cut(s)	119
BstBAI	YACGTR	1 cut(s)	93
BstC8I	GCNNGC	1 cut(s)	295
BstDSI	CCRYGG	2 cut(s)	48, 156
BstF5I	GGATG	1 cut(s)	135
BstFNI	CGCG	1 cut(s)	158
BstHHI	GCGC	1 cut(s)	128
BstKTI	GATC	2 cut(s)	180, 336
BstMBI	GATC	2 cut(s)	177, 333
BstMWI	GCNNNNNNNGC	3 cut(s)	83, 287, 303
BstSCI	CCNGG	2 cut(s)	254, 301
BstSFI	CTRYAG	1 cut(s)	291
BstSLI	GKGCMC	1 cut(s)	187
BstUI	CGCG	1 cut(s)	158
BstV1I	GCAGC	5 cut(s)	65, 68, 95, 155, 277
BstXI	CCANNNNNNTGG	1 cut(s)	146
BsuRI	GGCC	2 cut(s)	185, 297
BtgI	CCRYGG	2 cut(s)	48, 156
BtsCI	GGATG	1 cut(s)	135
Cac8I	GCNNGC	1 cut(s)	295
CfoI	GCGC	1 cut(s)	128
Cfr13I	GGNCC	2 cut(s)	183, 184
Cfr42I	CCGCGG	1 cut(s)	159
CseI	GACGC	1 cut(s)	127
CviAII	CATG	2 cut(s)	49, 196
CviJI	RGCY	8 cut(s)	59, 86, 115, 185, 200, 275, 281, 297
CviKI_1	RGCY	8 cut(s)	59, 86, 115, 185, 200, 275, 281, 297
DpnI	GATC	2 cut(s)	179, 335
DpnII	GATC	2 cut(s)	177, 333
Eco130I	CCWWGG	1 cut(s)	48
Eco147I	AGGCCT	1 cut(s)	297
Eco24I	GRGCYC	1 cut(s)	187
EcoO109I	RGGNCCY	2 cut(s)	183, 184
EcoT14I	CCWWGG	1 cut(s)	48
EcoT38I	GRGCYC	1 cut(s)	187
ErhI	CCWWGG	1 cut(s)	48
FaeI	CATG	2 cut(s)	52, 199
FaiI	YATR	2 cut(s)	50, 197
FalI	AAGNNNNNCTT	2 cut(s)	72, 104
FaqI	GGGAC	1 cut(s)	163
FatI	CATG	2 cut(s)	48, 195
FauI	CCCGC	2 cut(s)	163, 167
Fnu4HI	GCNGC	7 cut(s)	54, 57, 84, 159, 169, 172, 291
FokI	GGATG	1 cut(s)	122
FriOI	GRGCYC	1 cut(s)	187
Fsp4HI	GCNGC	7 cut(s)	54, 57, 84, 159, 169, 172, 291
GlaI	GCGC	1 cut(s)	127
GluI	GCNGC	7 cut(s)	54, 57, 84, 159, 169, 172, 291
GsuI	CTGGAG	1 cut(s)	33
HaeIII	GGCC	2 cut(s)	185, 297
HapII	CCGG	4 cut(s)	255, 270, 282, 303
HgaI	GACGC	1 cut(s)	127
HhaI	GCGC	1 cut(s)	128
Hin1I	GRCGYC	1 cut(s)	119
Hin1II	CATG	2 cut(s)	52, 199
Hin6I	GCGC	1 cut(s)	126
HinP1I	GCGC	1 cut(s)	126
HincII	GTYRAC	1 cut(s)	319
HindII	GTYRAC	1 cut(s)	319
HinfI	GANTC	3 cut(s)	151, 259, 285
HpaII	CCGG	4 cut(s)	255, 270, 282, 303
HphI	GGTGA	2 cut(s)	49, 118
Hpy166II	GTNNAC	2 cut(s)	109, 319
Hpy188III	TCNNGA	1 cut(s)	12
Hpy8I	GTNNAC	2 cut(s)	109, 319
HpyAV	CCTTC	2 cut(s)	308, 351
HpyCH4III	ACNGT	2 cut(s)	146, 236
HpyCH4IV	ACGT	1 cut(s)	92
HpyCH4V	TGCA	3 cut(s)	231, 293, 354
HpyF10VI	GCNNNNNNNGC	3 cut(s)	83, 287, 303
HpySE526I	ACGT	1 cut(s)	92
Hsp92I	GRCGYC	1 cut(s)	119
Hsp92II	CATG	2 cut(s)	52, 199
HspAI	GCGC	1 cut(s)	126
KspI	CCGCGG	1 cut(s)	159
Kzo9I	GATC	2 cut(s)	177, 333
LmnI	GCTCC	1 cut(s)	272
LpnPI	CCDG	9 cut(s)	86, 166, 225, 233, 268, 279, 283, 295, 316
Lsp1109I	GCAGC	5 cut(s)	65, 68, 95, 155, 277
LweI	GCATC	1 cut(s)	30
MaeII	ACGT	1 cut(s)	92
MalI	GATC	2 cut(s)	179, 335
MboI	GATC	2 cut(s)	177, 333
MhlI	GDGCHC	1 cut(s)	187
MluCI	AATT	1 cut(s)	163
MlyI	GAGTC	2 cut(s)	145, 279
MnlI	CCTC	1 cut(s)	197
MspA1I	CMGCKG	1 cut(s)	158
MspI	CCGG	4 cut(s)	255, 270, 282, 303
MspR9I	CCNGG	2 cut(s)	256, 303
MvnI	CGCG	1 cut(s)	158
MwoI	GCNNNNNNNGC	3 cut(s)	83, 287, 303
NciI	CCSGG	2 cut(s)	256, 303
NcoI	CCATGG	1 cut(s)	48
NdeII	GATC	2 cut(s)	177, 333
NlaIII	CATG	2 cut(s)	52, 199
NlaIV	GGNNCC	1 cut(s)	185
PceI	AGGCCT	1 cut(s)	297
PfeI	GAWTC	1 cut(s)	259
PkrI	GCNGC	7 cut(s)	55, 58, 85, 160, 170, 173, 292
PleI	GAGTC	2 cut(s)	145, 279
PpsI	GAGTC	2 cut(s)	145, 279
Ppu21I	YACGTR	1 cut(s)	93
PspN4I	GGNNCC	1 cut(s)	185
PspOMI	GGGCCC	1 cut(s)	183
PspPI	GGNCC	2 cut(s)	183, 184
PstI	CTGCAG	1 cut(s)	295
SacII	CCGCGG	1 cut(s)	159
SatI	GCNGC	7 cut(s)	54, 57, 84, 159, 169, 172, 291
Sau3AI	GATC	2 cut(s)	177, 333
Sau96I	GGNCC	2 cut(s)	183, 184
SchI	GAGTC	2 cut(s)	145, 279
ScrFI	CCNGG	2 cut(s)	256, 303
SduI	GDGCHC	1 cut(s)	187
SetI	ASST	5 cut(s)	27, 95, 105, 117, 277
SfaNI	GCATC	1 cut(s)	30
SfcI	CTRYAG	1 cut(s)	291
Sfr303I	CCGCGG	1 cut(s)	159
SgrBI	CCGCGG	1 cut(s)	159
Sse9I	AATT	1 cut(s)	163
SseBI	AGGCCT	1 cut(s)	297
SsiI	CCGC	7 cut(s)	77, 96, 156, 158, 171, 174, 217
StuI	AGGCCT	1 cut(s)	297
StyD4I	CCNGG	2 cut(s)	254, 301
StyI	CCWWGG	1 cut(s)	48
TaaI	ACNGT	2 cut(s)	146, 236
TaiI	ACGT	1 cut(s)	95
TasI	AATT	1 cut(s)	163
TauI	GCSGC	2 cut(s)	161, 174
TfiI	GAWTC	1 cut(s)	259
TseI	GCWGC	5 cut(s)	53, 56, 83, 168, 290

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.