Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003701.1

Orthogroup ID

OG0005488

Physical Location & Seq

Genomic Coordinates Reverse (-)

9865 .. 10293

Gene Structure 429 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003701.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

atggcttgctctagggcttttattctactctgcgtggtggtggtgtccatggcggcactgttgttgggcggagccaaagcaaccataacctgcagtcaggtggtgaacgggctgacaccgtgcattccctacttggaaaaaggtgggacacctgcctcaggttgctgcagcgggatcaagaccctctacagcacggcacacaccaccgctgacctccagggcgtttgtaactgtttgaaagaaaaattcagcagtattcactacagcagcaataacgtccgctttgctgctgggcttcctgccaagtgcgggatcaaaattccgtacaagatcagcccctccaccaactgcaaaaggtatgtaaagaaacacgaaacagaatctccatattatgtttataaactgtacgtacctgcatgcatatcttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0006810 GO:0006869 GO:0008150 GO:0010876 GO:0016020 GO:0033036 GO:0051179 GO:0051234 GO:0071702

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LTP_2 Tryp_alpha_amyl

Protein Analysis

142

Amino Acids

15.17

Weight (kDa)

9.15

Isoelectric Point (pI)

40.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005488)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G01870
fragaria_vesca	FvH4_6g09960 FvH4_7g28420
malus_domestica	MD04G1174000.v1.1 MD12G1187600.v1.1
prunus_persica	Prupe.6G293000_v2.0.a1
pyrus_communis	pycom04g15360 pycom12g17560
rosa_chinensis	RchiOBHm_Chr3g0460541 RchiOBHm_Chr3g0460571
rosa_laevigata	RLG00000024995 RLG00000031904
rosa_multiflora	Rmu_co8040472.1_g000001 Rmu_sc0001256.1_g000003 Rmu_sc0003701.1_g000004 Rmu_sc0006046.1_g000007
rosa_roxburghii	Rroxscaffold_6G00419360 Rroxscaffold_6G00419390
rosa_rugosa	Rorug03G0043600 Rorug03G0043900
rosa_samantha	Rh3AG101600 Rh3AG102100 Rh3BG105600 Rh3BG105800 Rh3CG107400 Rh3DG107000 Rh3DG107200
rosa_wichuraiana	Rw3G008650 Rw3G008670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	399
AarI	CACCTGC	1 cut(s)	160
Acc36I	ACCTGC	3 cut(s)	98, 160, 421
AciI	CCGC	6 cut(s)	53, 69, 171, 207, 280, 309
AclWI	GGATC	2 cut(s)	182, 320
AcsI	RAATTY	2 cut(s)	245, 318
AfaI	GTAC	3 cut(s)	326, 407, 411
AfiI	CCNNNNNNNGG	2 cut(s)	158, 309
AgsI	TTSAA	1 cut(s)	238
AjnI	CCWGG	1 cut(s)	216
AlwI	GGATC	2 cut(s)	182, 320
ApeKI	GCWGC	4 cut(s)	165, 168, 267, 287
ApoI	RAATTY	2 cut(s)	245, 318
AsuHPI	GGTGA	1 cut(s)	115
AxyI	CCTNAGG	1 cut(s)	157
BbvI	GCAGC	4 cut(s)	152, 180, 274, 279
BceAI	ACGGC	1 cut(s)	210
BciT130I	CCWGG	1 cut(s)	218
BfaI	CTAG	1 cut(s)	12
BfmI	CTRYAG	4 cut(s)	91, 166, 187, 262
BfuAI	ACCTGC	3 cut(s)	98, 160, 421
BisI	GCNGC	5 cut(s)	54, 166, 169, 268, 288
BlsI	GCNGC	5 cut(s)	55, 167, 170, 269, 289
Bme1390I	CCNGG	1 cut(s)	218
BmiI	GGNNCC	1 cut(s)	73
BmrFI	CCNGG	1 cut(s)	218
BpmI	CTGGAG	1 cut(s)	200
BsaAI	YACGTR	1 cut(s)	409
BsaJI	CCNNGG	2 cut(s)	48, 217
BsaXI	ACNNNNNCTCC	2 cut(s)	367, 397
Bsc4I	CCNNNNNNNGG	2 cut(s)	158, 309
Bse21I	CCTNAGG	1 cut(s)	157
BseBI	CCWGG	1 cut(s)	218
BseDI	CCNNGG	2 cut(s)	48, 217
BseLI	CCNNNNNNNGG	2 cut(s)	158, 309
BseMII	CTCAG	1 cut(s)	171
BseXI	GCAGC	4 cut(s)	152, 180, 274, 279
BseYI	CCCAGC	1 cut(s)	290
BslFI	GGGAC	1 cut(s)	160
BslI	CCNNNNNNNGG	2 cut(s)	158, 309
BsmFI	GGGAC	1 cut(s)	160
BsmI	GAATGC	1 cut(s)	123
Bsp143I	GATC	3 cut(s)	174, 312, 330
Bsp19I	CCATGG	1 cut(s)	48
BspACI	CCGC	6 cut(s)	53, 69, 171, 207, 280, 309
BspCNI	CTCAG	1 cut(s)	170
BspLI	GGNNCC	1 cut(s)	73
BspMAI	CTGCAG	2 cut(s)	95, 170
BspMI	ACCTGC	3 cut(s)	98, 160, 421
BspPI	GGATC	2 cut(s)	182, 320
BssECI	CCNNGG	2 cut(s)	48, 217
BssMI	GATC	3 cut(s)	174, 312, 330
BssT1I	CCWWGG	1 cut(s)	48
Bst2UI	CCWGG	1 cut(s)	218
Bst4CI	ACNGT	4 cut(s)	60, 120, 233, 405
BstBAI	YACGTR	1 cut(s)	409
BstC8I	GCNNGC	2 cut(s)	7, 418
BstDEI	CTNAG	2 cut(s)	157, 426
BstDSI	CCRYGG	1 cut(s)	48
BstENI	CCTNNNNNAGG	1 cut(s)	156
BstKTI	GATC	3 cut(s)	177, 315, 333
BstMBI	GATC	3 cut(s)	174, 312, 330
BstNI	CCWGG	1 cut(s)	218
BstNSI	RCATGY	1 cut(s)	420
BstSCI	CCNGG	1 cut(s)	216
BstSFI	CTRYAG	4 cut(s)	91, 166, 187, 262
BstSNI	TACGTA	1 cut(s)	409
BstV1I	GCAGC	4 cut(s)	152, 180, 274, 279
Bsu36I	CCTNAGG	1 cut(s)	157
BtgI	CCRYGG	1 cut(s)	48
BtsIMutI	CAGTG	1 cut(s)	56
BveI	ACCTGC	3 cut(s)	98, 160, 421
Cac8I	GCNNGC	2 cut(s)	7, 418
Csp6I	GTAC	3 cut(s)	325, 406, 410
CviAII	CATG	2 cut(s)	49, 417
CviJI	RGCY	6 cut(s)	5, 17, 74, 112, 295, 336
CviKI_1	RGCY	6 cut(s)	5, 17, 74, 112, 295, 336
CviQI	GTAC	3 cut(s)	325, 406, 410
DdeI	CTNAG	2 cut(s)	157, 426
DpnI	GATC	3 cut(s)	176, 314, 332
DpnII	GATC	3 cut(s)	174, 312, 330
EciI	GGCGGA	1 cut(s)	84
Eco105I	TACGTA	1 cut(s)	409
Eco130I	CCWWGG	1 cut(s)	48
Eco81I	CCTNAGG	1 cut(s)	157
EcoNI	CCTNNNNNAGG	1 cut(s)	156
EcoRII	CCWGG	1 cut(s)	216
EcoT14I	CCWWGG	1 cut(s)	48
EcoT22I	ATGCAT	1 cut(s)	422
ErhI	CCWWGG	1 cut(s)	48
FaeI	CATG	2 cut(s)	52, 420
FaiI	YATR	8 cut(s)	50, 86, 360, 388, 393, 399, 418, 422
FaqI	GGGAC	1 cut(s)	160
FatI	CATG	2 cut(s)	48, 416
FauI	CCCGC	2 cut(s)	164, 302
Fnu4HI	GCNGC	5 cut(s)	54, 166, 169, 268, 288
Fsp4HI	GCNGC	5 cut(s)	54, 166, 169, 268, 288
FspBI	CTAG	1 cut(s)	12
GluI	GCNGC	5 cut(s)	54, 166, 169, 268, 288
GsaI	CCCAGC	1 cut(s)	294
GsuI	CTGGAG	1 cut(s)	200
Hin1II	CATG	2 cut(s)	52, 420
HinfI	GANTC	1 cut(s)	380
HphI	GGTGA	1 cut(s)	115
Hpy166II	GTNNAC	1 cut(s)	106
Hpy188III	TCNNGA	1 cut(s)	178
Hpy8I	GTNNAC	1 cut(s)	106
HpyCH4III	ACNGT	4 cut(s)	60, 120, 233, 405
HpyCH4IV	ACGT	2 cut(s)	276, 408
HpyCH4V	TGCA	6 cut(s)	93, 123, 168, 351, 416, 420
HpyF3I	CTNAG	2 cut(s)	157, 426
HpySE526I	ACGT	2 cut(s)	276, 408
Hsp92II	CATG	2 cut(s)	52, 420
Kzo9I	GATC	3 cut(s)	174, 312, 330
LmnI	GCTCC	1 cut(s)	71
LpnPI	CCDG	8 cut(s)	83, 103, 144, 165, 203, 230, 276, 312
Lsp1109I	GCAGC	4 cut(s)	152, 180, 274, 279
MaeI	CTAG	1 cut(s)	12
MaeII	ACGT	2 cut(s)	276, 408
MaeIII	GTNAC	1 cut(s)	227
MalI	GATC	3 cut(s)	176, 314, 332
MboI	GATC	3 cut(s)	174, 312, 330
MluCI	AATT	2 cut(s)	245, 318
MnlI	CCTC	4 cut(s)	166, 194, 224, 349
Mph1103I	ATGCAT	1 cut(s)	422
MspA1I	CMGCKG	2 cut(s)	171, 209
MspR9I	CCNGG	1 cut(s)	218
Mva1269I	GAATGC	1 cut(s)	123
MvaI	CCWGG	1 cut(s)	218
NcoI	CCATGG	1 cut(s)	48
NdeII	GATC	3 cut(s)	174, 312, 330
NlaIII	CATG	2 cut(s)	52, 420
NlaIV	GGNNCC	1 cut(s)	73
NsiI	ATGCAT	1 cut(s)	422
NspI	RCATGY	1 cut(s)	420
PaeI	GCATGC	1 cut(s)	420
PaqCI	CACCTGC	1 cut(s)	160
PctI	GAATGC	1 cut(s)	123
PfeI	GAWTC	1 cut(s)	380
PkrI	GCNGC	5 cut(s)	55, 167, 170, 269, 289
Ppu21I	YACGTR	1 cut(s)	409
PsiI	TTATAA	1 cut(s)	399
Psp6I	CCWGG	1 cut(s)	216
PspFI	CCCAGC	1 cut(s)	290
PspGI	CCWGG	1 cut(s)	216
PspN4I	GGNNCC	1 cut(s)	73
PstI	CTGCAG	2 cut(s)	95, 170
RsaI	GTAC	3 cut(s)	326, 407, 411
RsaNI	GTAC	3 cut(s)	325, 406, 410
SatI	GCNGC	5 cut(s)	54, 166, 169, 268, 288
Sau3AI	GATC	3 cut(s)	174, 312, 330
ScrFI	CCNGG	1 cut(s)	218
SfcI	CTRYAG	4 cut(s)	91, 166, 187, 262
SnaBI	TACGTA	1 cut(s)	409
SphI	GCATGC	1 cut(s)	420
Sse9I	AATT	2 cut(s)	245, 318
SsiI	CCGC	6 cut(s)	53, 69, 171, 207, 280, 309
SspMI	CTAG	1 cut(s)	12
StyD4I	CCNGG	1 cut(s)	216
StyI	CCWWGG	1 cut(s)	48
TaaI	ACNGT	4 cut(s)	60, 120, 233, 405
TaiI	ACGT	2 cut(s)	279, 411
TasI	AATT	2 cut(s)	245, 318
TauI	GCSGC	1 cut(s)	56
TfiI	GAWTC	1 cut(s)	380
TscAI	CASTG	1 cut(s)	63
TseI	GCWGC	4 cut(s)	165, 168, 267, 287
TspGWI	ACGGA	1 cut(s)	312
TspRI	CASTG	1 cut(s)	63
XagI	CCTNNNNNAGG	1 cut(s)	156
XapI	RAATTY	2 cut(s)	245, 318
XceI	RCATGY	1 cut(s)	420
XspI	CTAG	1 cut(s)	12
Zsp2I	ATGCAT	1 cut(s)	422

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.