Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0005488

Physical Location & Seq

Genomic Coordinates Forward (+)

3398030 .. 3399081

Gene Structure 1052 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0043600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

ATGGAGAATGATCCAGACCCGGAAATGGAAGAGTTGGAGGCGAGGCAGAGGAGCCTAGGCAGAGCCTTCGACTCCTTGAATGTCGAAGCTTCTTCGGTCCTATTGTTCACTGCGCAGTGGAAGGAGCTCGAGGACCATTTTGAGTCGACCCGGAAGGAGATCCGGACCAGGTTGGCAGAGCTGGAGGAGCGTGTGAAGCTAGTCGCGGAGGTGGAGGCGAGGGCGGTGAGGTTGAAGACGGAAATGGAGGCCAAAGCTAAGGAATTGGGGGAAATGGAGGAGGTGGTGGAGCAGAAGCGGCGAGAGGTTGAAGAAGGTAATAGTCAGTTGTGTTGTATTAACTTGTTGATTGAAGAAAATAGAGAAGAGCTTAGAGTTAAAGAGAGTCAGTGTTCGGATTTTGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0006810 GO:0006869 GO:0008150 GO:0010876 GO:0016020 GO:0033036 GO:0051179 GO:0051234 GO:0071702

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LTP_2 Tryp_alpha_amyl

Protein Analysis

135

Amino Acids

15.8

Weight (kDa)

4.61

Isoelectric Point (pI)

52.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005488)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G01870
fragaria_vesca	FvH4_6g09960 FvH4_7g28420
malus_domestica	MD04G1174000.v1.1 MD12G1187600.v1.1
prunus_persica	Prupe.6G293000_v2.0.a1
pyrus_communis	pycom04g15360 pycom12g17560
rosa_chinensis	RchiOBHm_Chr3g0460541 RchiOBHm_Chr3g0460571
rosa_laevigata	RLG00000024995 RLG00000031904
rosa_multiflora	Rmu_co8040472.1_g000001 Rmu_sc0001256.1_g000003 Rmu_sc0003701.1_g000004 Rmu_sc0006046.1_g000007
rosa_roxburghii	Rroxscaffold_6G00419360 Rroxscaffold_6G00419390
rosa_rugosa	Rorug03G0043600 Rorug03G0043900
rosa_samantha	Rh3AG101600 Rh3AG102100 Rh3BG105600 Rh3BG105800 Rh3CG107400 Rh3DG107000 Rh3DG107200
rosa_wichuraiana	Rw3G008650 Rw3G008670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	114
AccI	GTMKAC	1 cut(s)	146
AccII	CGCG	1 cut(s)	206
AccIII	TCCGGA	1 cut(s)	162
AciI	CCGC	3 cut(s)	206, 224, 298
AclWI	GGATC	2 cut(s)	5, 154
AfiI	CCNNNNNNNGG	1 cut(s)	25
AgsI	TTSAA	4 cut(s)	79, 235, 311, 353
AjnI	CCWGG	1 cut(s)	167
AluBI	AGCT	6 cut(s)	89, 127, 181, 199, 257, 370
AluI	AGCT	6 cut(s)	89, 127, 181, 199, 257, 370
Alw21I	GWGCWC	1 cut(s)	129
AlwI	GGATC	2 cut(s)	5, 154
Ama87I	CYCGRG	1 cut(s)	128
Aor13HI	TCCGGA	1 cut(s)	162
AoxI	GGCC	1 cut(s)	249
AspA2I	CCTAGG	1 cut(s)	55
AspLEI	GCGC	1 cut(s)	115
AspS9I	GGNCC	3 cut(s)	97, 133, 165
AsuC2I	CCSGG	2 cut(s)	20, 151
AsuHPI	GGTGA	1 cut(s)	238
AvaI	CYCGRG	1 cut(s)	128
AvaII	GGWCC	3 cut(s)	97, 133, 165
AvrII	CCTAGG	1 cut(s)	55
BanII	GRGCYC	1 cut(s)	129
BbsI	GAAGAC	1 cut(s)	242
Bbv12I	GWGCWC	1 cut(s)	129
BcgI	CGANNNNNNTGC	2 cut(s)	49, 83
BciT130I	CCWGG	1 cut(s)	169
BcnI	CCSGG	2 cut(s)	20, 151
BfaI	CTAG	2 cut(s)	56, 200
BisI	GCNGC	1 cut(s)	299
BlnI	CCTAGG	1 cut(s)	55
BlsI	GCNGC	1 cut(s)	300
Bme1390I	CCNGG	3 cut(s)	20, 151, 169
Bme18I	GGWCC	3 cut(s)	97, 133, 165
BmeT110I	CYCGRG	1 cut(s)	128
BmgT120I	GGNCC	3 cut(s)	97, 133, 165
BmiI	GGNNCC	1 cut(s)	53
BmrFI	CCNGG	3 cut(s)	20, 151, 169
BpiI	GAAGAC	1 cut(s)	242
BpmI	CTGGAG	1 cut(s)	203
Bpu10I	CCTNAGC	1 cut(s)	258
BpuMI	CCSGG	2 cut(s)	20, 151
BsaJI	CCNNGG	1 cut(s)	55
BsaWI	WCCGGW	1 cut(s)	162
Bsc4I	CCNNNNNNNGG	1 cut(s)	25
BseAI	TCCGGA	1 cut(s)	162
BseBI	CCWGG	1 cut(s)	169
BseDI	CCNNGG	1 cut(s)	55
BseLI	CCNNNNNNNGG	1 cut(s)	25
BseRI	GAGGAG	3 cut(s)	64, 200, 293
Bsh1236I	CGCG	1 cut(s)	206
BshFI	GGCC	1 cut(s)	251
BsiHKAI	GWGCWC	1 cut(s)	129
BsiHKCI	CYCGRG	1 cut(s)	128
BsiSI	CCGG	3 cut(s)	20, 151, 163
BslI	CCNNNNNNNGG	1 cut(s)	25
BsnI	GGCC	1 cut(s)	251
BsoBI	CYCGRG	1 cut(s)	128
Bsp1286I	GDGCHC	1 cut(s)	129
Bsp13I	TCCGGA	1 cut(s)	162
Bsp143I	GATC	2 cut(s)	10, 159
BspACI	CCGC	3 cut(s)	206, 224, 298
BspANI	GGCC	1 cut(s)	251
BspEI	TCCGGA	1 cut(s)	162
BspFNI	CGCG	1 cut(s)	206
BspLI	GGNNCC	1 cut(s)	53
BspPI	GGATC	2 cut(s)	5, 154
BspQI	GCTCTTC	1 cut(s)	360
BssECI	CCNNGG	1 cut(s)	55
BssMI	GATC	2 cut(s)	10, 159
BssT1I	CCWWGG	1 cut(s)	55
Bst2UI	CCWGG	1 cut(s)	169
Bst6I	CTCTTC	2 cut(s)	24, 360
BstDEI	CTNAG	2 cut(s)	258, 371
BstFNI	CGCG	1 cut(s)	206
BstHHI	GCGC	1 cut(s)	115
BstKTI	GATC	2 cut(s)	13, 162
BstMBI	GATC	2 cut(s)	10, 159
BstMWI	GCNNNNNNNGC	3 cut(s)	187, 196, 298
BstNI	CCWGG	1 cut(s)	169
BstSCI	CCNGG	3 cut(s)	18, 149, 167
BstUI	CGCG	1 cut(s)	206
BstV2I	GAAGAC	1 cut(s)	242
BstX2I	RGATCY	1 cut(s)	159
BstYI	RGATCY	1 cut(s)	159
BsuRI	GGCC	1 cut(s)	251
BtsI	GCAGTG	2 cut(s)	108, 122
BtsIMutI	CAGTG	3 cut(s)	108, 122, 395
CfoI	GCGC	1 cut(s)	115
Cfr13I	GGNCC	3 cut(s)	97, 133, 165
CsiI	ACCWGGT	1 cut(s)	167
CviJI	RGCY	9 cut(s)	54, 65, 89, 127, 181, 199, 251, 257, 370
CviKI_1	RGCY	9 cut(s)	54, 65, 89, 127, 181, 199, 251, 257, 370
DdeI	CTNAG	2 cut(s)	258, 371
DpnI	GATC	2 cut(s)	12, 161
DpnII	GATC	2 cut(s)	10, 159
Eam1104I	CTCTTC	2 cut(s)	24, 360
EarI	CTCTTC	2 cut(s)	24, 360
Ecl136II	GAGCTC	1 cut(s)	127
Eco130I	CCWWGG	1 cut(s)	55
Eco24I	GRGCYC	1 cut(s)	129
Eco47I	GGWCC	3 cut(s)	97, 133, 165
Eco53kI	GAGCTC	1 cut(s)	127
Eco88I	CYCGRG	1 cut(s)	128
EcoICRI	GAGCTC	1 cut(s)	127
EcoRII	CCWGG	1 cut(s)	167
EcoT14I	CCWWGG	1 cut(s)	55
EcoT38I	GRGCYC	1 cut(s)	129
ErhI	CCWWGG	1 cut(s)	55
FblI	GTMKAC	1 cut(s)	146
Fnu4HI	GCNGC	1 cut(s)	299
FriOI	GRGCYC	1 cut(s)	129
Fsp4HI	GCNGC	1 cut(s)	299
FspBI	CTAG	2 cut(s)	56, 200
FspI	TGCGCA	1 cut(s)	114
GlaI	GCGC	1 cut(s)	114
GluI	GCNGC	1 cut(s)	299
GsuI	CTGGAG	1 cut(s)	203
HaeIII	GGCC	1 cut(s)	251
HapII	CCGG	3 cut(s)	20, 151, 163
HhaI	GCGC	1 cut(s)	115
Hin6I	GCGC	1 cut(s)	113
HinP1I	GCGC	1 cut(s)	113
HincII	GTYRAC	1 cut(s)	147
HindII	GTYRAC	1 cut(s)	147
HindIII	AAGCTT	1 cut(s)	87
HinfI	GANTC	3 cut(s)	71, 143, 385
HpaII	CCGG	3 cut(s)	20, 151, 163
HphI	GGTGA	1 cut(s)	238
Hpy166II	GTNNAC	2 cut(s)	108, 147
Hpy188I	TCNGA	1 cut(s)	397
Hpy188III	TCNNGA	2 cut(s)	14, 163
Hpy8I	GTNNAC	2 cut(s)	108, 147
HpyAV	CCTTC	4 cut(s)	76, 115, 148, 308
HpyF10VI	GCNNNNNNNGC	3 cut(s)	187, 196, 298
HpyF3I	CTNAG	2 cut(s)	258, 371
HspAI	GCGC	1 cut(s)	113
Kpn2I	TCCGGA	1 cut(s)	162
Kzo9I	GATC	2 cut(s)	10, 159
LguI	GCTCTTC	1 cut(s)	360
LmnI	GCTCC	4 cut(s)	51, 124, 187, 289
LpnPI	CCDG	7 cut(s)	27, 33, 154, 164, 167, 176, 181
MabI	ACCWGGT	1 cut(s)	167
MaeI	CTAG	2 cut(s)	56, 200
MalI	GATC	2 cut(s)	12, 161
MboI	GATC	2 cut(s)	10, 159
MboII	GAAGA	6 cut(s)	41, 84, 247, 323, 365, 377
MflI	RGATCY	1 cut(s)	159
MhlI	GDGCHC	1 cut(s)	129
MluCI	AATT	1 cut(s)	263
MlyI	GAGTC	3 cut(s)	65, 152, 394
MmeI	TCCRAC	1 cut(s)	15
MroI	TCCGGA	1 cut(s)	162
MseI	TTAA	2 cut(s)	339, 378
MspI	CCGG	3 cut(s)	20, 151, 163
MspR9I	CCNGG	3 cut(s)	20, 151, 169
MvaI	CCWGG	1 cut(s)	169
MvnI	CGCG	1 cut(s)	206
MwoI	GCNNNNNNNGC	3 cut(s)	187, 196, 298
NciI	CCSGG	2 cut(s)	20, 151
NdeII	GATC	2 cut(s)	10, 159
NlaIV	GGNNCC	1 cut(s)	53
NsbI	TGCGCA	1 cut(s)	114
PaeR7I	CTCGAG	1 cut(s)	128
PciSI	GCTCTTC	1 cut(s)	360
PkrI	GCNGC	1 cut(s)	300
PleI	GAGTC	3 cut(s)	65, 151, 393
PpsI	GAGTC	3 cut(s)	65, 151, 393
Psp124BI	GAGCTC	1 cut(s)	129
Psp6I	CCWGG	1 cut(s)	167
PspGI	CCWGG	1 cut(s)	167
PspN4I	GGNNCC	1 cut(s)	53
PspPI	GGNCC	3 cut(s)	97, 133, 165
PspXI	VCTCGAGB	1 cut(s)	128
PsuI	RGATCY	1 cut(s)	159
SacI	GAGCTC	1 cut(s)	129
SalI	GTCGAC	1 cut(s)	145
SapI	GCTCTTC	1 cut(s)	360
SaqAI	TTAA	2 cut(s)	339, 378
SatI	GCNGC	1 cut(s)	299
Sau3AI	GATC	2 cut(s)	10, 159
Sau96I	GGNCC	3 cut(s)	97, 133, 165
SchI	GAGTC	3 cut(s)	65, 152, 394
ScrFI	CCNGG	3 cut(s)	20, 151, 169
SduI	GDGCHC	1 cut(s)	129
SexAI	ACCWGGT	1 cut(s)	167
Sfr274I	CTCGAG	1 cut(s)	128
SinI	GGWCC	3 cut(s)	97, 133, 165
SlaI	CTCGAG	1 cut(s)	128
SmlI	CTYRAG	1 cut(s)	128
SmoI	CTYRAG	1 cut(s)	128
Sse9I	AATT	1 cut(s)	263
SsiI	CCGC	3 cut(s)	206, 224, 298
SspMI	CTAG	2 cut(s)	56, 200
SstI	GAGCTC	1 cut(s)	129
StyD4I	CCNGG	3 cut(s)	18, 149, 167
StyI	CCWWGG	1 cut(s)	55
TaqI	TCGA	4 cut(s)	69, 84, 129, 146
TaqII	GACCGA	1 cut(s)	85
TasI	AATT	1 cut(s)	263
TauI	GCSGC	1 cut(s)	301
Tru1I	TTAA	2 cut(s)	339, 378
Tru9I	TTAA	2 cut(s)	339, 378
TscAI	CASTG	3 cut(s)	115, 122, 395
TspGWI	ACGGA	1 cut(s)	254
TspRI	CASTG	3 cut(s)	115, 122, 395
VpaK11BI	GGWCC	3 cut(s)	97, 133, 165
XhoI	CTCGAG	1 cut(s)	128
XmaJI	CCTAGG	1 cut(s)	55
XmiI	GTMKAC	1 cut(s)	146
XspI	CTAG	2 cut(s)	56, 200

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.