AT5G01980

Zinc finger, C3HC4 type (RING finger)

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Forward (+)
375208 .. 377603
2396 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G01980.1

Sequence Viewer

Length: 1482 bp
ATGGAATCACAAGGACCTTCTAATGGTCATCCCATGGATATCAGCAGCAATTCAATCCCATCGTCTGCCTGTAATCTGTGCGGAAGAGTCGTTCAATCTGCTTCCGATGATCTTGAAATCTTCAGCTTATGTGTCGACTGTAAGTTTTTGTTGCTTGAAGATTTCGGCACTCCCGCGCCTCCCTTGGCTCGGCGGCAGACAATTAGGAGGAGGAGGATGAGGAGGAGGAGAAGAACAACTAGGCACGACAGCTCTGAGTCTGTCGGTGTCGGTGATCTTTCCTCCCAACAATTCACACACTTGATAAGCATTGCAAGACAAAGCCTTTCAACGGTTCAAGCTAGTGAGGATCTACGTGATGACCTGCGAACTAGCTCCCATACCACTCCAAGCGGCTCGACAAGATGGAGACTCTTCTCAGAATCTGAAAGTGATGATTTTGACAACTTTGGCGAAACCGAATCAAACGCTAGCTTTAGCCTCTACAGATTTCCCCATGCTGATAACGATACCATTTCTTTTAGTGCTTACGGTGGAGAGTCTGATGCTTCCACGGACAGGCATGCCGATATCTTTGTTCAACCAGATGACAGGAGCGACATTGACTTTGACACTGATATAGACCCGATGCGCGCTGGTCTTAACCAGTGGAACTCAGACGAAGAAGACAGGGAATGGGAGGAAGGAGCGGGTCCTTCTGGGGTTGCAGGAACACGCTATAGAAACTATTTGGCAAGTCCAAGTGAGAGCTACAGCTCCATGACTCGGTTTGATTCACCTGAGTTAGAGAGAAGCTTTCGTCAAAGAATTATAGAGAGGAGGCATTCGTTATCTCGCAACATCTTCACTGGTTTGGAGGATTTGGACTTCTCCCCCTATGCTGCAAATGTTGGGGATTATCTTGATGAGAGAGGCTTTGATGAACTGCTTGAGCAACTTGCTGAGTCTGACAATTCAAGAAGAGGTGCACCACCTGCATCTGTCTCATGCGTCAGGAATCTTCCAAGGGTTATCATTGCAGAGGAGCATGTAATGAAGGGCCTAGTTTGTGCGATCTGCAAGGAGCTTTTCTCCCTCCGCAATGAAACCACGCAGCTTCCGTGTCTACATCTATACCATGCTCATTGTATCGTACCTTGGCTGAGTGCCCGTAACTCCTGCCCACTCTGCCGTTATGAGCTCCCGACAGATGATAAAGATTACGAGGAGGGAAAGCGGAATGTGCTGGATGTGAGCGAGGATAGCTCCTCCTCTGATGATGGTACAGAATCGGGGGAAGAGGAATATGTAGAGAGAGGTGAGAGCGAGTCTGGTGTGAGCAGAGTCAGCAGAGGAAGATGGCTGTTTCTGGCTGCTGCACCAGTTGTGAGTCTGGTGGGCGTTGTGTTGGCAATGTGGCTAAGCAGCCCACACAGGAGGGGTATAGCAATCTCTCATAGCCAAAGGGAGAACAGAACCAGAAGATGGCTGCCGTTTTTCTGA

Protein Analysis

493

Amino Acids

55.54

Weight (kDa)

4.99

Isoelectric Point (pI)

68.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RING_2 PF13639 350 - 391 7.6e-11 Ring finger domain
zf-C3HC4_2 PF13923 350 - 390 1.4e-07 Zinc finger, C3HC4 type (RING finger)
zf-C3HC4 PF00097 350 - 390 2.1e-06 Zinc finger, C3HC4 type (RING finger)
zf-rbx1 PF12678 367 - 391 3.3e-06 RING-H2 zinc finger domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 982
Acc36I ACCTGC 2 cut(s) 372, 982
AccB7I CCANNNNNTGG 1 cut(s) 1464
AccBSI CCGCTC 1 cut(s) 689
AccI GTMKAC 2 cut(s) 135, 1105
AccII CGCG 2 cut(s) 176, 633
AciI CCGC 7 cut(s) 81, 174, 193, 393, 689, 1078, 1216
AclWI GGATC 1 cut(s) 357
AcuI CTGAAG 1 cut(s) 106
AfaI GTAC 2 cut(s) 1134, 1264
AfiI CCNNNNNNNGG 6 cut(s) 23, 189, 331, 558, 765, 1464
AgsI TTSAA 8 cut(s) 54, 95, 116, 158, 330, 338, 581, 957
AloI GAACNNNNNNTCC 2 cut(s) 75, 107
Alw21I GWGCWC 2 cut(s) 970, 1182
Alw26I GTCTC 2 cut(s) 403, 988
Alw44I GTGCAC 1 cut(s) 966
AlwI GGATC 1 cut(s) 357
AlwNI CAGNNNCTG 1 cut(s) 425
AoxI GGCC 1 cut(s) 1039
ApaLI GTGCAC 1 cut(s) 966
ApeKI GCWGC 7 cut(s) 45, 881, 1093, 1352, 1355, 1404, 1468
ArsI GACNNNNNNTTYG 2 cut(s) 590, 622
AspLEI GCGC 3 cut(s) 178, 633, 635
AspS9I GGNCC 3 cut(s) 14, 692, 1039
AsuHPI GGTGA 3 cut(s) 284, 768, 1310
AsuNHI GCTAGC 1 cut(s) 470
AvaII GGWCC 2 cut(s) 14, 692
BaeGI GKGCMC 2 cut(s) 970, 1150
BanII GRGCYC 1 cut(s) 1182
BbsI GAAGAC 1 cut(s) 672
Bbv12I GWGCWC 2 cut(s) 970, 1182
BbvI GCAGC 7 cut(s) 57, 868, 1105, 1339, 1342, 1416, 1455
BccI CCATC 5 cut(s) 67, 399, 1253, 1332, 1458
BceAI ACGGC 2 cut(s) 1155, 1456
BcoDI GTCTC 2 cut(s) 403, 988
BfaI CTAG 5 cut(s) 240, 342, 372, 471, 1043
BfmI CTRYAG 3 cut(s) 484, 718, 751
BfuAI ACCTGC 2 cut(s) 372, 982
BisI GCNGC 9 cut(s) 46, 194, 394, 882, 1094, 1353, 1356, 1405, 1469
BlpI GCTNAGC 1 cut(s) 1400
BlsI GCNGC 9 cut(s) 47, 195, 395, 883, 1095, 1354, 1357, 1406, 1470
Bme18I GGWCC 2 cut(s) 14, 692
BmgT120I GGNCC 3 cut(s) 14, 692, 1039
BmiI GGNNCC 1 cut(s) 693
BmsI GCATC 3 cut(s) 535, 618, 986
BmtI GCTAGC 1 cut(s) 474
BpiI GAAGAC 1 cut(s) 672
BplI GAGNNNNNCTC 4 cut(s) 1055, 1087, 1229, 1261
Bpu1102I GCTNAGC 1 cut(s) 1400
BpuEI CTTGAG 1 cut(s) 950
BsaAI YACGTR 1 cut(s) 356
BsaJI CCNNGG 5 cut(s) 33, 183, 552, 1004, 1136
Bsc4I CCNNNNNNNGG 6 cut(s) 23, 189, 331, 558, 765, 1464
Bse1I ACTGG 3 cut(s) 646, 853, 1361
Bse3DI GCAATG 4 cut(s) 309, 1014, 1087, 1398
BseDI CCNNGG 5 cut(s) 33, 183, 552, 1004, 1136
BseGI GGATG 3 cut(s) 28, 222, 1234
BseLI CCNNNNNNNGG 6 cut(s) 23, 189, 331, 558, 765, 1464
BseMI GCAATG 4 cut(s) 309, 1014, 1087, 1398
BseMII CTCAG 6 cut(s) 246, 432, 669, 771, 933, 1133
BseNI ACTGG 3 cut(s) 646, 853, 1361
BsePI GCGCGC 1 cut(s) 631
BseSI GKGCMC 2 cut(s) 970, 1150
BseXI GCAGC 7 cut(s) 57, 868, 1105, 1339, 1342, 1416, 1455
BsgI GTGCAG 1 cut(s) 1341
Bsh1236I CGCG 2 cut(s) 176, 633
BshFI GGCC 1 cut(s) 1041
BsiHKAI GWGCWC 2 cut(s) 970, 1182
BslI CCNNNNNNNGG 6 cut(s) 23, 189, 331, 558, 765, 1464
BsmAI GTCTC 2 cut(s) 403, 988
BsmI GAATGC 1 cut(s) 823
BsnI GGCC 1 cut(s) 1041
Bsp1286I GDGCHC 3 cut(s) 970, 1150, 1182
Bsp143I GATC 4 cut(s) 109, 274, 349, 1053
Bsp1720I GCTNAGC 1 cut(s) 1400
Bsp19I CCATGG 1 cut(s) 33
BspACI CCGC 7 cut(s) 81, 174, 193, 393, 689, 1078, 1216
BspANI GGCC 1 cut(s) 1041
BspCNI CTCAG 6 cut(s) 247, 431, 668, 772, 934, 1134
BspFNI CGCG 2 cut(s) 176, 633
BspLI GGNNCC 1 cut(s) 693
BspMI ACCTGC 2 cut(s) 372, 982
BspOI GCTAGC 1 cut(s) 474
BspPI GGATC 1 cut(s) 357
BsrBI CCGCTC 1 cut(s) 689
BsrDI GCAATG 4 cut(s) 309, 1014, 1087, 1398
BsrI ACTGG 3 cut(s) 646, 853, 1361
BssECI CCNNGG 5 cut(s) 33, 183, 552, 1004, 1136
BssHII GCGCGC 1 cut(s) 631
BssMI GATC 4 cut(s) 109, 274, 349, 1053
BssT1I CCWWGG 4 cut(s) 33, 183, 1004, 1136
Bst4CI ACNGT 3 cut(s) 140, 334, 533
Bst6I CTCTTC 4 cut(s) 79, 419, 955, 1272
BstAPI GCANNNNNTGC 1 cut(s) 974
BstBAI YACGTR 1 cut(s) 356
BstC8I GCNNGC 3 cut(s) 472, 564, 633
BstDEI CTNAG 7 cut(s) 255, 418, 655, 780, 942, 1142, 1400
BstDSI CCRYGG 2 cut(s) 33, 552
BstF5I GGATG 3 cut(s) 28, 222, 1234
BstFNI CGCG 2 cut(s) 176, 633
BstHHI GCGC 3 cut(s) 178, 633, 635
BstKTI GATC 4 cut(s) 112, 277, 352, 1056
BstMAI GTCTC 2 cut(s) 403, 988
BstMBI GATC 4 cut(s) 109, 274, 349, 1053
BstMWI GCNNNNNNNGC 5 cut(s) 974, 1167, 1222, 1242, 1326
BstNSI RCATGY 2 cut(s) 566, 1031
BstSFI CTRYAG 3 cut(s) 484, 718, 751
BstSLI GKGCMC 2 cut(s) 970, 1150
BstUI CGCG 2 cut(s) 176, 633
BstV1I GCAGC 7 cut(s) 57, 868, 1105, 1339, 1342, 1416, 1455
BstV2I GAAGAC 1 cut(s) 672
BstX2I RGATCY 1 cut(s) 349
BstYI RGATCY 1 cut(s) 349
BsuRI GGCC 1 cut(s) 1041
BtgI CCRYGG 2 cut(s) 33, 552
BtsCI GGATG 3 cut(s) 28, 222, 1234
BtsIMutI CAGTG 3 cut(s) 612, 653, 846
BveI ACCTGC 2 cut(s) 372, 982
Cac8I GCNNGC 3 cut(s) 472, 564, 633
CaiI CAGNNNCTG 1 cut(s) 425
CfoI GCGC 3 cut(s) 178, 633, 635
Cfr13I GGNCC 3 cut(s) 14, 692, 1039
CseI GACGC 1 cut(s) 979
Csp6I GTAC 2 cut(s) 1133, 1263
CviAII CATG 7 cut(s) 34, 497, 563, 760, 987, 1028, 1118
CviQI GTAC 2 cut(s) 1133, 1263
DdeI CTNAG 7 cut(s) 255, 418, 655, 780, 942, 1142, 1400
DpnI GATC 4 cut(s) 111, 276, 351, 1055
DpnII GATC 4 cut(s) 109, 274, 349, 1053
Eam1104I CTCTTC 4 cut(s) 79, 419, 955, 1272
EarI CTCTTC 4 cut(s) 79, 419, 955, 1272
Ecl136II GAGCTC 1 cut(s) 1180
Eco130I CCWWGG 4 cut(s) 33, 183, 1004, 1136
Eco24I GRGCYC 1 cut(s) 1182
Eco32I GATATC 2 cut(s) 40, 571
Eco47I GGWCC 2 cut(s) 14, 692
Eco53kI GAGCTC 1 cut(s) 1180
Eco57I CTGAAG 1 cut(s) 106
EcoICRI GAGCTC 1 cut(s) 1180
EcoO109I RGGNCCY 3 cut(s) 14, 692, 1039
EcoRV GATATC 2 cut(s) 40, 571
EcoT14I CCWWGG 4 cut(s) 33, 183, 1004, 1136
EcoT38I GRGCYC 1 cut(s) 1182
ErhI CCWWGG 4 cut(s) 33, 183, 1004, 1136
FaeI CATG 7 cut(s) 37, 500, 566, 763, 990, 1031, 1121
FatI CATG 7 cut(s) 33, 496, 562, 759, 986, 1027, 1117
FauI CCCGC 2 cut(s) 181, 682
FblI GTMKAC 2 cut(s) 135, 1105
Fnu4HI GCNGC 9 cut(s) 46, 194, 394, 882, 1094, 1353, 1356, 1405, 1469
FokI GGATG 3 cut(s) 15, 229, 1241
FriOI GRGCYC 1 cut(s) 1182
Fsp4HI GCNGC 9 cut(s) 46, 194, 394, 882, 1094, 1353, 1356, 1405, 1469
FspBI CTAG 5 cut(s) 240, 342, 372, 471, 1043
GlaI GCGC 3 cut(s) 177, 632, 634
GluI GCNGC 9 cut(s) 46, 194, 394, 882, 1094, 1353, 1356, 1405, 1469
HaeIII GGCC 1 cut(s) 1041
HgaI GACGC 1 cut(s) 979
HhaI GCGC 3 cut(s) 178, 633, 635
Hin1II CATG 7 cut(s) 37, 500, 566, 763, 990, 1031, 1121
Hin6I GCGC 3 cut(s) 176, 631, 633
HinP1I GCGC 3 cut(s) 176, 631, 633
HincII GTYRAC 1 cut(s) 136
HindII GTYRAC 1 cut(s) 136
HindIII AAGCTT 1 cut(s) 793
HphI GGTGA 3 cut(s) 284, 768, 1310
Hpy166II GTNNAC 3 cut(s) 136, 968, 1106
Hpy188I TCNGA 9 cut(s) 106, 256, 421, 427, 544, 658, 949, 1255, 1481
Hpy188III TCNNGA 5 cut(s) 113, 902, 957, 994, 1183
Hpy8I GTNNAC 3 cut(s) 136, 968, 1106
HpyAV CCTTC 4 cut(s) 27, 677, 705, 1030
HpyCH4III ACNGT 3 cut(s) 140, 334, 533
HpyCH4IV ACGT 1 cut(s) 355
HpyCH4V TGCA 8 cut(s) 314, 707, 884, 968, 977, 1019, 1059, 1358
HpyF10VI GCNNNNNNNGC 5 cut(s) 974, 1167, 1222, 1242, 1326
HpyF3I CTNAG 7 cut(s) 255, 418, 655, 780, 942, 1142, 1400
HpySE526I ACGT 1 cut(s) 355
Hsp92II CATG 7 cut(s) 37, 500, 566, 763, 990, 1031, 1121
HspAI GCGC 3 cut(s) 176, 631, 633
Kzo9I GATC 4 cut(s) 109, 274, 349, 1053
LmnI GCTCC 8 cut(s) 380, 594, 686, 761, 1024, 1063, 1185, 1250
Lsp1109I GCAGC 7 cut(s) 57, 868, 1105, 1339, 1342, 1416, 1455
LweI GCATC 3 cut(s) 535, 618, 986
MaeI CTAG 5 cut(s) 240, 342, 372, 471, 1043
MaeII ACGT 1 cut(s) 355
MaeIII GTNAC 1 cut(s) 1151
MalI GATC 4 cut(s) 111, 276, 351, 1055
MbiI CCGCTC 1 cut(s) 689
MboI GATC 4 cut(s) 109, 274, 349, 1053
MflI RGATCY 1 cut(s) 349
MhlI GDGCHC 3 cut(s) 970, 1150, 1182
MluCI AATT 5 cut(s) 49, 201, 290, 807, 952
MlyI GAGTC 9 cut(s) 96, 266, 405, 548, 757, 953, 1316, 1332, 1378
MseI TTAA 1 cut(s) 642
Mva1269I GAATGC 1 cut(s) 823
MvnI CGCG 2 cut(s) 176, 633
MwoI GCNNNNNNNGC 5 cut(s) 974, 1167, 1222, 1242, 1326
NcoI CCATGG 1 cut(s) 33
NdeII GATC 4 cut(s) 109, 274, 349, 1053
NheI GCTAGC 1 cut(s) 470
NlaIII CATG 7 cut(s) 37, 500, 566, 763, 990, 1031, 1121
NlaIV GGNNCC 1 cut(s) 693
NmeAIII GCCGAG 1 cut(s) 169
NspI RCATGY 2 cut(s) 566, 1031
PaeI GCATGC 1 cut(s) 566
PaqCI CACCTGC 1 cut(s) 982
PauI GCGCGC 1 cut(s) 631
PcsI WCGNNNNNNNCGW 1 cut(s) 1097
PctI GAATGC 1 cut(s) 823
PfeI GAWTC 6 cut(s) 5, 422, 461, 773, 997, 1268
PflMI CCANNNNNTGG 1 cut(s) 1464
PkrI GCNGC 9 cut(s) 47, 195, 395, 883, 1095, 1354, 1357, 1406, 1470
PleI GAGTC 9 cut(s) 95, 265, 405, 547, 757, 952, 1315, 1331, 1377
PpsI GAGTC 9 cut(s) 95, 265, 405, 547, 757, 952, 1315, 1331, 1377
Ppu21I YACGTR 1 cut(s) 356
PpuMI RGGWCCY 2 cut(s) 14, 692
Psp124BI GAGCTC 1 cut(s) 1182
Psp5II RGGWCCY 2 cut(s) 14, 692
PspN4I GGNNCC 1 cut(s) 693
PspPI GGNCC 3 cut(s) 14, 692, 1039
PspPPI RGGWCCY 2 cut(s) 14, 692
PstNI CAGNNNCTG 1 cut(s) 425
PsuI RGATCY 1 cut(s) 349
PteI GCGCGC 1 cut(s) 631
RsaI GTAC 2 cut(s) 1134, 1264
RsaNI GTAC 2 cut(s) 1133, 1263
SacI GAGCTC 1 cut(s) 1182
SalI GTCGAC 1 cut(s) 134
SaqAI TTAA 1 cut(s) 642
SatI GCNGC 9 cut(s) 46, 194, 394, 882, 1094, 1353, 1356, 1405, 1469
Sau3AI GATC 4 cut(s) 109, 274, 349, 1053
Sau96I GGNCC 3 cut(s) 14, 692, 1039
SchI GAGTC 9 cut(s) 96, 266, 405, 548, 757, 953, 1316, 1332, 1378
SduI GDGCHC 3 cut(s) 970, 1150, 1182
SfaNI GCATC 3 cut(s) 535, 618, 986
SfcI CTRYAG 3 cut(s) 484, 718, 751
SinI GGWCC 2 cut(s) 14, 692
SmlI CTYRAG 1 cut(s) 929
SmoI CTYRAG 1 cut(s) 929
SphI GCATGC 1 cut(s) 566
Sse9I AATT 5 cut(s) 49, 201, 290, 807, 952
SsiI CCGC 7 cut(s) 81, 174, 193, 393, 689, 1078, 1216
SspMI CTAG 5 cut(s) 240, 342, 372, 471, 1043
SstI GAGCTC 1 cut(s) 1182
StyI CCWWGG 4 cut(s) 33, 183, 1004, 1136
TaaI ACNGT 3 cut(s) 140, 334, 533
TaiI ACGT 1 cut(s) 358
TaqI TCGA 2 cut(s) 135, 398
TasI AATT 5 cut(s) 49, 201, 290, 807, 952
TauI GCSGC 2 cut(s) 196, 396
TfiI GAWTC 6 cut(s) 5, 422, 461, 773, 997, 1268
Tru1I TTAA 1 cut(s) 642
Tru9I TTAA 1 cut(s) 642
TscAI CASTG 3 cut(s) 619, 653, 853
TseI GCWGC 7 cut(s) 45, 881, 1093, 1352, 1355, 1404, 1468
TspDTI ATGAA 3 cut(s) 936, 1049, 1098
TspGWI ACGGA 2 cut(s) 569, 1089
TspRI CASTG 3 cut(s) 619, 653, 853
Van91I CCANNNNNTGG 1 cut(s) 1464
VneI GTGCAC 1 cut(s) 966
VpaK11BI GGWCC 2 cut(s) 14, 692
XceI RCATGY 2 cut(s) 566, 1031
XmiI GTMKAC 2 cut(s) 135, 1105
XspI CTAG 5 cut(s) 240, 342, 372, 471, 1043
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.